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Items: 1 to 50 of 73

1.

Spx, the central regulator of the heat and oxidative stress response in B. subtilis, can repress transcription of translation-related genes.

Schäfer H, Heinz A, Sudzinová P, Voß M, Hantke I, Krásný L, Turgay K.

Mol Microbiol. 2019 Feb;111(2):514-533. doi: 10.1111/mmi.14171. Epub 2018 Dec 11.

PMID:
30480837
2.

The Core and Holoenzyme Forms of RNA Polymerase from Mycobacterium smegmatis.

Kouba T, Pospíšil J, Hnilicová J, Šanderová H, Barvík I, Krásný L.

J Bacteriol. 2019 Jan 28;201(4). pii: e00583-18. doi: 10.1128/JB.00583-18. Print 2019 Feb 15.

PMID:
30478083
3.

Ms1 RNA increases the amount of RNA polymerase in Mycobacterium smegmatis.

Šiková M, Janoušková M, Ramaniuk O, Páleníková P, Pospíšil J, Bartl P, Suder A, Pajer P, Kubičková P, Pavliš O, Hradilová M, Vítovská D, Šanderová H, Převorovský M, Hnilicová J, Krásný L.

Mol Microbiol. 2019 Feb;111(2):354-372. doi: 10.1111/mmi.14159. Epub 2018 Dec 11.

PMID:
30427073
4.

Transcription apparatus of the yeast virus-like elements: Architecture, function, and evolutionary origin.

Sýkora M, Pospíšek M, Novák J, Mrvová S, Krásný L, Vopálenský V.

PLoS Pathog. 2018 Oct 22;14(10):e1007377. doi: 10.1371/journal.ppat.1007377. eCollection 2018 Oct.

5.

Corrigendum to "Spatial localisation of Discoidin Domain Receptor 2 (DDR2) signalling is dependent on its collagen binding and kinase activity" [Biochem. Biophys. Res. Commun. 501 (1) (18 June 2018) 124-130].

Luczynski MT, Harrison PT, Lima N, Krasny L, Paul A, Huang PH.

Biochem Biophys Res Commun. 2018 Sep 26;504(1):360. doi: 10.1016/j.bbrc.2018.08.051. Epub 2018 Aug 22. No abstract available.

PMID:
30143260
6.

σI from Bacillus subtilis: Impact on Gene Expression and Characterization of σI-Dependent Transcription That Requires New Types of Promoters with Extended -35 and -10 Elements.

Ramaniuk O, Převorovský M, Pospíšil J, Vítovská D, Kofroňová O, Benada O, Schwarz M, Šanderová H, Hnilicová J, Krásný L.

J Bacteriol. 2018 Aug 10;200(17). pii: e00251-18. doi: 10.1128/JB.00251-18. Print 2018 Sep 1.

7.

Spatial localisation of Discoidin Domain Receptor 2 (DDR2) signalling is dependent on its collagen binding and kinase activity.

Luczynski MT, Harrison PT, Lima N, Krasny L, Paul A, Huang PH.

Biochem Biophys Res Commun. 2018 Jun 18;501(1):124-130. doi: 10.1016/j.bbrc.2018.04.191. Epub 2018 May 3. Erratum in: Biochem Biophys Res Commun. 2018 Sep 26;504(1):360.

8.

CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5' Capping with NAD<sup/>.

Vvedenskaya IO, Bird JG, Zhang Y, Zhang Y, Jiao X, Barvík I, Krásný L, Kiledjian M, Taylor DM, Ebright RH, Nickels BE.

Mol Cell. 2018 May 3;70(3):553-564.e9. doi: 10.1016/j.molcel.2018.03.014. Epub 2018 Apr 19.

PMID:
29681497
9.

Turning Off Transcription with Bacterial RNA Polymerase through CuAAC Click Reactions of DNA Containing 5-Ethynyluracil.

Slavíčková M, Janoušková M, Šimonová A, Cahová H, Kambová M, Šanderová H, Krásný L, Hocek M.

Chemistry. 2018 Jun 12;24(33):8311-8314. doi: 10.1002/chem.201801757. Epub 2018 May 17.

PMID:
29655191
10.

SWATH mass spectrometry as a tool for quantitative profiling of the matrisome.

Krasny L, Bland P, Kogata N, Wai P, Howard BA, Natrajan RC, Huang PH.

J Proteomics. 2018 Oct 30;189:11-22. doi: 10.1016/j.jprot.2018.02.026. Epub 2018 Mar 1.

11.

5-(Hydroxymethyl)uracil and -cytosine as potential epigenetic marks enhancing or inhibiting transcription with bacterial RNA polymerase.

Janoušková M, Vaníková Z, Nici F, Boháčová S, Vítovská D, Šanderová H, Hocek M, Krásný L.

Chem Commun (Camb). 2017 Dec 12;53(99):13253-13255. doi: 10.1039/c7cc08053k.

PMID:
29184924
12.

Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Srb P, Nováček J, Kadeřávek P, Rabatinová A, Krásný L, Žídková J, Bobálová J, Sklenář V, Žídek L.

J Biomol NMR. 2017 Nov;69(3):133-146. doi: 10.1007/s10858-017-0138-1. Epub 2017 Oct 25.

PMID:
29071460
13.

Lipophosphonoxins II: Design, Synthesis, and Properties of Novel Broad Spectrum Antibacterial Agents.

Seydlová G, Pohl R, Zborníková E, Ehn M, Šimák O, Panova N, Kolář M, Bogdanová K, Večeřová R, Fišer R, Šanderová H, Vítovská D, Sudzinová P, Pospíšil J, Benada O, Křížek T, Sedlák D, Bartůněk P, Krásný L, Rejman D.

J Med Chem. 2017 Jul 27;60(14):6098-6118. doi: 10.1021/acs.jmedchem.7b00355. Epub 2017 Jul 12.

PMID:
28654257
14.

Kinetic modelling and meta-analysis of the B. subtilis SigA regulatory network during spore germination and outgrowth.

Ramaniuk O, Černý M, Krásný L, Vohradský J.

Biochim Biophys Acta Gene Regul Mech. 2017 Aug;1860(8):894-904. doi: 10.1016/j.bbagrm.2017.06.003. Epub 2017 Jun 22.

PMID:
28648455
15.

Solution structure of domain 1.1 of the σA factor from Bacillus subtilis is preformed for binding to the RNA polymerase core.

Zachrdla M, Padrta P, Rabatinová A, Šanderová H, Barvík I, Krásný L, Žídek L.

J Biol Chem. 2017 Jul 14;292(28):11610-11617. doi: 10.1074/jbc.M117.784074. Epub 2017 May 24.

16.

Non-canonical transcription initiation: the expanding universe of transcription initiating substrates.

Barvík I, Rejman D, Panova N, Šanderová H, Krásný L.

FEMS Microbiol Rev. 2017 Mar 1;41(2):131-138. doi: 10.1093/femsre/fuw041. Review.

PMID:
27799279
17.

Comparative proteomic assessment of matrisome enrichment methodologies.

Krasny L, Paul A, Wai P, Howard BA, Natrajan RC, Huang PH.

Biochem J. 2016 Nov 1;473(21):3979-3995. Epub 2016 Sep 2.

18.

Molecular aspects of the interaction between Mason-Pfizer monkey virus matrix protein and artificial phospholipid membrane.

Junková P, Prchal J, Spiwok V, Pleskot R, Kadlec J, Krásný L, Hynek R, Hrabal R, Ruml T.

Proteins. 2016 Nov;84(11):1717-1727. doi: 10.1002/prot.25156. Epub 2016 Sep 15.

PMID:
27578150
19.

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA.

Bird JG, Zhang Y, Tian Y, Panova N, Barvík I, Greene L, Liu M, Buckley B, Krásný L, Lee JK, Kaplan CD, Ebright RH, Nickels BE.

Nature. 2016 Jul 21;535(7612):444-7. Epub 2016 Jul 6.

20.

Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases.

Raindlová V, Janoušková M, Slavíčková M, Perlíková P, Boháčová S, Milisavljevič N, Šanderová H, Benda M, Barvík I, Krásný L, Hocek M.

Nucleic Acids Res. 2016 Apr 20;44(7):3000-12. doi: 10.1093/nar/gkw171. Epub 2016 Mar 21.

21.

Insights into the Mechanism of Action of Bactericidal Lipophosphonoxins.

Panova N, Zborníková E, Šimák O, Pohl R, Kolář M, Bogdanová K, Večeřová R, Seydlová G, Fišer R, Hadravová R, Šanderová H, Vítovská D, Šiková M, Látal T, Lovecká P, Barvík I, Krásný L, Rejman D.

PLoS One. 2015 Dec 30;10(12):e0145918. doi: 10.1371/journal.pone.0145918. eCollection 2015.

22.

Age-related changes in the lateral lipid distribution in a human lens described by mass spectrometry imaging.

Pol J, Faltyskova H, Krasny L, Volný M, Vlacil O, Hajduch M, Lemr K, Havlicek V.

Eur J Mass Spectrom (Chichester). 2015;21(3):297-303. doi: 10.1255/ejms.1350.

PMID:
26307709
23.

High-throughput workflow for identification of phosphorylated peptides by LC-MALDI-TOF/TOF-MS coupled to in situ enrichment on MALDI plates functionalized by ion landing.

Krásný L, Pompach P, Strnadová M, Hynek R, Vališ K, Havlíček V, Novák P, Volný M.

J Mass Spectrom. 2015 Jun;50(6):802-11. doi: 10.1002/jms.3586.

PMID:
26169134
24.

Fabry disease: renal sphingolipid distribution in the α-Gal A knockout mouse model by mass spectrometric and immunohistochemical imaging.

Kuchar L, Faltyskova H, Krasny L, Dobrovolny R, Hulkova H, Ledvinova J, Volny M, Strohalm M, Lemr K, Kryspinova L, Asfaw B, Rybová J, Desnick RJ, Havlicek V.

Anal Bioanal Chem. 2015 Mar;407(8):2283-91. doi: 10.1007/s00216-014-8402-7. Epub 2014 Dec 27.

PMID:
25542581
25.

Spatial segmentation of MALDI FT-ICR MSI data: a powerful tool to explore the head and neck tumor in situ lipidome.

Krasny L, Hoffmann F, Ernst G, Trede D, Alexandrov T, Havlicek V, Guntinas-Lichius O, von Eggeling F, Crecelius AC.

J Am Soc Mass Spectrom. 2015 Jan;26(1):36-43. doi: 10.1007/s13361-014-1018-5. Epub 2014 Nov 6.

PMID:
25374335
26.

Lateral resolution in NALDI MSI: back to the future.

Krasny L, Benada O, Strnadova M, Lemr K, Havlicek V.

Anal Bioanal Chem. 2015 Mar;407(8):2141-7. doi: 10.1007/s00216-014-8294-6. Epub 2014 Nov 1.

PMID:
25366978
27.

Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria.

Hnilicová J, Jirát Matějčková J, Šiková M, Pospíšil J, Halada P, Pánek J, Krásný L.

Nucleic Acids Res. 2014 Oct;42(18):11763-76. doi: 10.1093/nar/gku793. Epub 2014 Sep 12.

28.

ε, a new subunit of RNA polymerase found in gram-positive bacteria.

Keller AN, Yang X, Wiedermannová J, Delumeau O, Krásný L, Lewis PJ.

J Bacteriol. 2014 Oct;196(20):3622-32. doi: 10.1128/JB.02020-14. Epub 2014 Aug 4.

29.

X-ray vs. NMR structure of N-terminal domain of δ-subunit of RNA polymerase.

Demo G, Papoušková V, Komárek J, Kadeřávek P, Otrusinová O, Srb P, Rabatinová A, Krásný L, Žídek L, Sklenář V, Wimmerová M.

J Struct Biol. 2014 Aug;187(2):174-186. doi: 10.1016/j.jsb.2014.06.001. Epub 2014 Jun 14.

PMID:
24937760
30.

Characterization of HelD, an interacting partner of RNA polymerase from Bacillus subtilis.

Wiedermannová J, Sudzinová P, Kovaľ T, Rabatinová A, Šanderova H, Ramaniuk O, Rittich Š, Dohnálek J, Fu Z, Halada P, Lewis P, Krásny L.

Nucleic Acids Res. 2014 Apr;42(8):5151-63. doi: 10.1093/nar/gku113. Epub 2014 Feb 11.

31.

Spectral density mapping protocols for analysis of molecular motions in disordered proteins.

Kadeřávek P, Zapletal V, Rabatinová A, Krásný L, Sklenář V, Žídek L.

J Biomol NMR. 2014 Mar;58(3):193-207. doi: 10.1007/s10858-014-9816-4. Epub 2014 Feb 11.

PMID:
24515886
32.

Differentiation of Cronobacter spp. by tryptic digestion of the cell suspension followed by MALDI-TOF MS analysis.

Krásný L, Rohlová E, Růžičková H, Santrůček J, Hynek R, Hochel I.

J Microbiol Methods. 2014 Mar;98:105-13. doi: 10.1016/j.mimet.2014.01.008. Epub 2014 Jan 23.

PMID:
24462807
33.

Structural study of the partially disordered full-length δ subunit of RNA polymerase from Bacillus subtilis.

Papoušková V, Kadeřávek P, Otrusinová O, Rabatinová A, ŠSanderová H, Nováček J, Krásný L, Sklenář V, Žídek L.

Chembiochem. 2013 Sep 23;14(14):1772-9. doi: 10.1002/cbic.201300226. Epub 2013 Jul 18. Erratum in: Chembiochem. 2013 Sep 23;14(14):1684.

PMID:
23868186
34.

The δ subunit of RNA polymerase is required for rapid changes in gene expression and competitive fitness of the cell.

Rabatinová A, Šanderová H, Jirát Matějčková J, Korelusová J, Sojka L, Barvík I, Papoušková V, Sklenár V, Žídek L, Krásný L.

J Bacteriol. 2013 Jun;195(11):2603-11. doi: 10.1128/JB.00188-13. Epub 2013 Mar 29.

35.

Osmotin, a pathogenesis-related protein.

Viktorova J, Krasny L, Kamlar M, Novakova M, Mackova M, Macek T.

Curr Protein Pept Sci. 2012 Nov;13(7):672-81. Review.

PMID:
23061797
36.

In-situ enrichment of phosphopeptides on MALDI plates modified by ambient ion landing.

Krásný L, Pompach P, Strohalm M, Obsilova V, Strnadová M, Novák P, Volný M.

J Mass Spectrom. 2012 Oct;47(10):1294-302. doi: 10.1002/jms.3081.

PMID:
23019160
37.

Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis.

Rochat T, Nicolas P, Delumeau O, Rabatinová A, Korelusová J, Leduc A, Bessières P, Dervyn E, Krásny L, Noirot P.

Nucleic Acids Res. 2012 Oct;40(19):9571-83. doi: 10.1093/nar/gks755. Epub 2012 Aug 16.

38.

Construction of in vitro transcription system for Corynebacterium glutamicum and its use in the recognition of promoters of different classes.

Holátko J, Silar R, Rabatinová A, Sanderová H, Halada P, Nešvera J, Krásný L, Pátek M.

Appl Microbiol Biotechnol. 2012 Oct;96(2):521-9. doi: 10.1007/s00253-012-4336-1. Epub 2012 Aug 11.

PMID:
22885668
39.

Occurrence of Cronobacter spp. in retail foods.

Hochel I, Růžičková H, Krásný L, Demnerová K.

J Appl Microbiol. 2012 Jun;112(6):1257-65. doi: 10.1111/j.1365-2672.2012.05292.x. Epub 2012 Apr 11.

40.

High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins.

Zawadzka-Kazimierczuk A, Koźmiński W, Sanderová H, Krásný L.

J Biomol NMR. 2012 Apr;52(4):329-37. doi: 10.1007/s10858-012-9613-x. Epub 2012 Feb 17.

41.

Scedosporium and Pseudallescheria low molecular weight metabolites revealed by database search.

Krasny L, Strohalm M, Bouchara JP, Sulc M, Lemr K, Barreto-Bergter E, Havlicek V.

Mycoses. 2011 Oct;54 Suppl 3:37-42. doi: 10.1111/j.1439-0507.2011.02109.x.

PMID:
21995661
42.

Lipophosphonoxins: new modular molecular structures with significant antibacterial properties.

Rejman D, Rabatinová A, Pombinho AR, Kovačková S, Pohl R, Zborníková E, Kolář M, Bogdanová K, Nyč O, Sanderová H, Látal T, Bartůněk P, Krásný L.

J Med Chem. 2011 Nov 24;54(22):7884-98. doi: 10.1021/jm2009343. Epub 2011 Nov 1.

PMID:
22007704
43.

Disulfide bond decay during matrix-assisted laser desorption/ionization time-of-flight mass spectrometry experiments.

Krásný L, Hynek R, Kodíček M.

Rapid Commun Mass Spectrom. 2011 Sep 15;25(17):2468-74. doi: 10.1002/rcm.5140.

PMID:
21818807
44.

Poly[N-(2-hydroxypropyl)methacrylamide]-based tissue-embedding medium compatible with MALDI mass spectrometry imaging experiments.

Strohalm M, Strohalm J, Kaftan F, Krásný L, Volný M, Novák P, Ulbrich K, Havlíček V.

Anal Chem. 2011 Jul 1;83(13):5458-62. doi: 10.1021/ac2011679. Epub 2011 Jun 14.

PMID:
21634803
45.

5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion.

Nováček J, Zawadzka-Kazimierczuk A, Papoušková V, Zídek L, Sanderová H, Krásný L, Koźmiński W, Sklenář V.

J Biomol NMR. 2011 May;50(1):1-11. doi: 10.1007/s10858-011-9496-2. Epub 2011 Mar 20.

PMID:
21424579
46.

Rapid changes in gene expression: DNA determinants of promoter regulation by the concentration of the transcription initiating NTP in Bacillus subtilis.

Sojka L, Kouba T, Barvík I, Sanderová H, Maderová Z, Jonák J, Krásny L.

Nucleic Acids Res. 2011 Jun;39(11):4598-611. doi: 10.1093/nar/gkr032. Epub 2011 Feb 7.

47.

The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures.

Pánek J, Krásny L, Bobek J, Jezková E, Korelusová J, Vohradsky J.

Nucleic Acids Res. 2011 Apr;39(8):3418-26. doi: 10.1093/nar/gkq1186. Epub 2010 Dec 30.

48.

Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments.

Motáčková V, Nováček J, Zawadzka-Kazimierczuk A, Kazimierczuk K, Zídek L, Sanderová H, Krásný L, Koźmiński W, Sklenář V.

J Biomol NMR. 2010 Nov;48(3):169-77. doi: 10.1007/s10858-010-9447-3. Epub 2010 Oct 2.

49.

Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs.

Motácková V, Sanderová H, Zídek L, Novácek J, Padrta P, Svenková A, Korelusová J, Jonák J, Krásný L, Sklenár V.

Proteins. 2010 May 15;78(7):1807-10. doi: 10.1002/prot.22708. No abstract available.

PMID:
20310067
50.

S3EPY: a Sparky extension for determination of small scalar couplings from spin-state-selective excitation NMR experiments.

Novák P, Zídek L, Motácková V, Padrta P, Svenková A, Nuzillard JM, Krásný L, Sklenár V.

J Biomol NMR. 2010 Feb;46(2):191-7. doi: 10.1007/s10858-009-9392-1. Epub 2009 Dec 12.

PMID:
20012760

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