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Items: 32

1.

The genome of AR9, a giant transducing Bacillus phage encoding two multisubunit RNA polymerases.

Lavysh D, Sokolova M, Minakhin L, Yakunina M, Artamonova T, Kozyavkin S, Makarova KS, Koonin EV, Severinov K.

Virology. 2016 Aug;495:185-96. doi: 10.1016/j.virol.2016.04.030. Epub 2016 May 26.

2.

Draft Genome Sequence of the Fungus Trametes hirsuta 072.

Pavlov AR, Tyazhelova TV, Moiseenko KV, Vasina DV, Mosunova OV, Fedorova TV, Maloshenok LG, Landesman EO, Bruskin SA, Psurtseva NV, Slesarev AI, Kozyavkin SA, Koroleva OV.

Genome Announc. 2015 Nov 19;3(6). pii: e01287-15. doi: 10.1128/genomeA.01287-15.

3.

Complete Genome Sequence of Lactobacillus acidophilus FSI4, Isolated from Yogurt.

Iartchouk O, Kozyavkin S, Karamychev V, Slesarev A.

Genome Announc. 2015 Apr 9;3(2). pii: e00166-15. doi: 10.1128/genomeA.00166-15.

4.

Cooperation between catalytic and DNA binding domains enhances thermostability and supports DNA synthesis at higher temperatures by thermostable DNA polymerases.

Pavlov AR, Pavlova NV, Kozyavkin SA, Slesarev AI.

Biochemistry. 2012 Mar 13;51(10):2032-43. doi: 10.1021/bi2014807. Epub 2012 Mar 1.

5.

Sequence analysis of Leuconostoc mesenteroides bacteriophage Phi1-A4 isolated from an industrial vegetable fermentation.

Lu Z, Altermann E, Breidt F, Kozyavkin S.

Appl Environ Microbiol. 2010 Mar;76(6):1955-66. doi: 10.1128/AEM.02126-09. Epub 2010 Jan 29.

6.

Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth.

Lee JH, Karamychev VN, Kozyavkin SA, Mills D, Pavlov AR, Pavlova NV, Polouchine NN, Richardson PM, Shakhova VV, Slesarev AI, Weimer B, O'Sullivan DJ.

BMC Genomics. 2008 May 27;9:247. doi: 10.1186/1471-2164-9-247.

7.

Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails.

Minakhin L, Goel M, Berdygulova Z, Ramanculov E, Florens L, Glazko G, Karamychev VN, Slesarev AI, Kozyavkin SA, Khromov I, Ackermann HW, Washburn M, Mushegian A, Severinov K.

J Mol Biol. 2008 Apr 25;378(2):468-80. doi: 10.1016/j.jmb.2008.02.018. Epub 2008 Feb 15.

8.

Comparative genomics of the lactic acid bacteria.

Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Díaz-Muñiz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D.

Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15611-6. Epub 2006 Oct 9.

9.

Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions.

Naryshkina T, Liu J, Florens L, Swanson SK, Pavlov AR, Pavlova NV, Inman R, Minakhin L, Kozyavkin SA, Washburn M, Mushegian A, Severinov K.

J Mol Biol. 2006 Dec 8;364(4):667-77. Epub 2006 Sep 6.

10.

High-throughput production of optimized primers (fimers) for whole-genome direct sequencing.

Polushin N, Malykh A, Morocho AM, Slesarev A, Kozyavkin S.

Methods Mol Biol. 2005;288:291-304.

PMID:
15333911
11.

Recent developments in the optimization of thermostable DNA polymerases for efficient applications.

Pavlov AR, Pavlova NV, Kozyavkin SA, Slesarev AI.

Trends Biotechnol. 2004 May;22(5):253-60. Review. No abstract available.

PMID:
15109812
12.

Finishing "working draft" BAC projects by directed sequencing with ThermoFidelase and Fimers.

Malykh A, Malykh O, Polushin N, Kozyavkin S, Slesarev A.

Methods Mol Biol. 2004;255:295-308. No abstract available.

PMID:
15020833
13.

Use of Fimers to eliminate polymerase chain reaction and primer-dimer artifacts and to increase yield in BAC-sequencing reactions.

Malykh A, Polushin N, Slesarev A, Kozyavkin S.

Methods Mol Biol. 2004;255:221-9. No abstract available.

PMID:
15020828
14.

Helix-hairpin-helix motifs confer salt resistance and processivity on chimeric DNA polymerases.

Pavlov AR, Belova GI, Kozyavkin SA, Slesarev AI.

Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13510-5. Epub 2002 Oct 4.

15.

The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.

Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, Belova GI, Aravind L, Natale DA, Rogozin IB, Tatusov RL, Wolf YI, Stetter KO, Malykh AG, Koonin EV, Kozyavkin SA.

Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4644-9.

16.

2'-modified oligonucleotides from methoxyoxalamido and succinimido precursors: synthesis, properties, and applications.

Polushin N, Malykh A, Malykh O, Zenkova M, Chumakova N, Vlassov V, Kozyavkin S.

Nucleosides Nucleotides Nucleic Acids. 2001 Apr-Jul;20(4-7):507-14.

PMID:
11563067
17.

Topoisomerase V from Methanopyrus kandleri.

Slesarev AI, Belova GI, Lake JA, Kozyavkin SA.

Methods Enzymol. 2001;334:179-92. No abstract available.

PMID:
11398460
18.

A type IB topoisomerase with DNA repair activities.

Belova GI, Prasad R, Kozyavkin SA, Lake JA, Wilson SH, Slesarev AI.

Proc Natl Acad Sci U S A. 2001 May 22;98(11):6015-20. Epub 2001 May 15.

19.

Structure-expression relationships of the 15-kDa selenoprotein gene. Possible role of the protein in cancer etiology.

Kumaraswamy E, Malykh A, Korotkov KV, Kozyavkin S, Hu Y, Kwon SY, Moustafa ME, Carlson BA, Berry MJ, Lee BJ, Hatfield DL, Diamond AM, Gladyshev VN.

J Biol Chem. 2000 Nov 10;275(45):35540-7.

20.

Evidence for an early prokaryotic origin of histones H2A and H4 prior to the emergence of eukaryotes.

Slesarev AI, Belova GI, Kozyavkin SA, Lake JA.

Nucleic Acids Res. 1998 Jan 15;26(2):427-30.

21.

A two-subunit type I DNA topoisomerase (reverse gyrase) from an extreme hyperthermophile.

Krah R, Kozyavkin SA, Slesarev AI, Gellert M.

Proc Natl Acad Sci U S A. 1996 Jan 9;93(1):106-10.

22.

DNA enzymology above 100 degrees C. Topoisomerase V unlinks circular DNA at 80-122 degrees C.

Kozyavkin SA, Pushkin AV, Eiserling FA, Stetter KO, Lake JA, Slesarev AI.

J Biol Chem. 1995 Jun 9;270(23):13593-5.

23.

A reverse gyrase with an unusual structure. A type I DNA topoisomerase from the hyperthermophile Methanopyrus kandleri is a two-subunit protein.

Kozyavkin SA, Krah R, Gellert M, Stetter KO, Lake JA, Slesarev AI.

J Biol Chem. 1994 Apr 15;269(15):11081-9.

24.
25.

DNA topoisomerase V is a relative of eukaryotic topoisomerase I from a hyperthermophilic prokaryote.

Slesarev AI, Stetter KO, Lake JA, Gellert M, Krah R, Kozyavkin SA.

Nature. 1993 Aug 19;364(6439):735-7.

PMID:
8395022
27.

DNA linking potential generated by gyrase.

Kozyavkin SA, Slesarev AI, Malkhosyan SR, Panyutin IG.

Eur J Biochem. 1990 Jul 20;191(1):105-13.

28.

Archaebacterial reverse gyrase cleavage-site specificity is similar to that of eubacterial DNA topoisomerases I.

Kovalsky OI, Kozyavkin SA, Slesarev AI.

Nucleic Acids Res. 1990 May 11;18(9):2801-5.

29.

DNA substrate specificity of reverse gyrase from extremely thermophilic archaebacteria.

Slesarev AI, Kozyavkin SA.

J Biomol Struct Dyn. 1990 Feb;7(4):935-42.

PMID:
2155623
30.

The ionic strength dependence of the cooperativity factor for DNA melting.

Kozyavkin SA, Mirkin SM, Amirikyan BR.

J Biomol Struct Dyn. 1987 Aug;5(1):119-26.

PMID:
3271461
31.

The kinetics of DNA helix-coil subtransitions.

Kozyavkin SA, Naritsin DB, Lyubchenko YuL.

J Biomol Struct Dyn. 1986 Feb;3(4):689-704.

PMID:
3271045
32.

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