Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 92

1.

Initial soil microbiome composition and functioning predetermine future plant health.

Wei Z, Gu Y, Friman VP, Kowalchuk GA, Xu Y, Shen Q, Jousset A.

Sci Adv. 2019 Sep 25;5(9):eaaw0759. doi: 10.1126/sciadv.aaw0759. eCollection 2019 Sep.

2.

Root-associated microorganisms reprogram plant life history along the growth-stress resistance tradeoff.

Ravanbakhsh M, Kowalchuk GA, Jousset A.

ISME J. 2019 Dec;13(12):3093-3101. doi: 10.1038/s41396-019-0501-1. Epub 2019 Sep 11.

PMID:
31511619
3.

Optimization of plant hormonal balance by microorganisms prevents plant heavy metal accumulation.

Ravanbakhsh M, Kowalchuk GA, Jousset A.

J Hazard Mater. 2019 Nov 5;379:120787. doi: 10.1016/j.jhazmat.2019.120787. Epub 2019 Jun 17.

PMID:
31247392
4.

Resource stoichiometry shapes community invasion resistance via productivity-mediated species identity effects.

Yang T, Han G, Yang Q, Friman VP, Gu S, Wei Z, Kowalchuk GA, Xu Y, Shen Q, Jousset A.

Proc Biol Sci. 2018 Dec 19;285(1893):20182035. doi: 10.1098/rspb.2018.2035.

PMID:
30963908
5.

Alternative transient states and slow plant community responses after changed flooding regimes.

Sarneel JM, Hefting MM, Kowalchuk GA, Nilsson C, Van der Velden M, Visser EJW, Voesenek LACJ, Jansson R.

Glob Chang Biol. 2019 Jan 14. doi: 10.1111/gcb.14569. [Epub ahead of print]

6.

Modulation of Litter Decomposition by the Soil Microbial Food Web Under Influence of Land Use Change.

Heijboer A, de Ruiter PC, Bodelier PLE, Kowalchuk GA.

Front Microbiol. 2018 Nov 26;9:2860. doi: 10.3389/fmicb.2018.02860. eCollection 2018.

7.

Local Functioning, Landscape Structuring: Drivers of Soil Microbial Community Structure and Function in Peatlands.

Teurlincx S, Heijboer A, Veraart AJ, Kowalchuk GA, Declerck SAJ.

Front Microbiol. 2018 Sep 3;9:2060. doi: 10.3389/fmicb.2018.02060. eCollection 2018.

8.

Root exudates drive the soil-borne legacy of aboveground pathogen infection.

Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q.

Microbiome. 2018 Sep 12;6(1):156. doi: 10.1186/s40168-018-0537-x.

9.

Silver Toxicity Thresholds for Multiple Soil Microbial Biomarkers.

Vasileiadis S, Brunetti G, Marzouk E, Wakelin S, Kowalchuk GA, Lombi E, Donner E.

Environ Sci Technol. 2018 Aug 7;52(15):8745-8755. doi: 10.1021/acs.est.8b00677. Epub 2018 Jul 16.

PMID:
29949713
10.

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression.

Dignam BEA, O'Callaghan M, Condron LM, Kowalchuk GA, Van Nostrand JD, Zhou J, Wakelin SA.

PLoS One. 2018 May 7;13(5):e0196581. doi: 10.1371/journal.pone.0196581. eCollection 2018.

11.

Microbial modulation of plant ethylene signaling: ecological and evolutionary consequences.

Ravanbakhsh M, Sasidharan R, Voesenek LACJ, Kowalchuk GA, Jousset A.

Microbiome. 2018 Mar 21;6(1):52. doi: 10.1186/s40168-018-0436-1. Review.

12.

Soil protist communities form a dynamic hub in the soil microbiome.

Xiong W, Jousset A, Guo S, Karlsson I, Zhao Q, Wu H, Kowalchuk GA, Shen Q, Li R, Geisen S.

ISME J. 2018 Feb;12(2):634-638. doi: 10.1038/ismej.2017.171. Epub 2017 Oct 13.

13.

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity.

Dassen S, Cortois R, Martens H, de Hollander M, Kowalchuk GA, van der Putten WH, De Deyn GB.

Mol Ecol. 2017 Aug;26(15):4085-4098. doi: 10.1111/mec.14175. Epub 2017 Jun 2.

PMID:
28489329
14.

ISMEJ turns 10: tracking rapid progress in microbial ecology.

Kowalchuk GA, Bailey MJ.

ISME J. 2017 May;11(5):1059-1060. doi: 10.1038/ismej.2017.50. No abstract available.

15.

Compositional Stability of the Bacterial Community in a Climate-Sensitive Sub-Arctic Peatland.

Weedon JT, Kowalchuk GA, Aerts R, Freriks S, Röling WF, van Bodegom PM.

Front Microbiol. 2017 Mar 7;8:317. doi: 10.3389/fmicb.2017.00317. eCollection 2017.

16.

Resource availability modulates biodiversity-invasion relationships by altering competitive interactions.

Yang T, Wei Z, Friman VP, Xu Y, Shen Q, Kowalchuk GA, Jousset A.

Environ Microbiol. 2017 Aug;19(8):2984-2991. doi: 10.1111/1462-2920.13708. Epub 2017 Mar 20.

PMID:
28229529
17.

The Ecology of Acidobacteria: Moving beyond Genes and Genomes.

Kielak AM, Barreto CC, Kowalchuk GA, van Veen JA, Kuramae EE.

Front Microbiol. 2016 May 31;7:744. doi: 10.3389/fmicb.2016.00744. eCollection 2016. Review.

18.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

19.

Early colonizers of unoccupied habitats represent a minority of the soil bacterial community.

Wolf AB, Rudnick MB, de Boer W, Kowalchuk GA.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv024. doi: 10.1093/femsec/fiv024. Epub 2015 Mar 15.

PMID:
25778508
20.

Soil-borne microbial functional structure across different land uses.

Kuramae EE, Zhou JZ, Kowalchuk GA, van Veen JA.

ScientificWorldJournal. 2014;2014:216071. doi: 10.1155/2014/216071. Epub 2014 Aug 10.

21.

Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria.

Wolf AB, Vos M, de Boer W, Kowalchuk GA.

PLoS One. 2013 Dec 31;8(12):e83661. doi: 10.1371/journal.pone.0083661. eCollection 2013.

22.

Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing.

Kuramae EE, Verbruggen E, Hillekens R, de Hollander M, Röling WF, van der Heijden MG, Kowalchuk GA.

PLoS One. 2013 Jul 18;8(7):e69973. doi: 10.1371/journal.pone.0069973. Print 2013.

23.

Single-cell versus population-level reproductive success of bacterial immigrants to pre-colonized leaf surfaces.

Remus-Emsermann MN, Kowalchuk GA, Leveau JH.

Environ Microbiol Rep. 2013 Jun;5(3):387-92. doi: 10.1111/1758-2229.12040. Epub 2013 Feb 25.

PMID:
23754719
24.

Micro-scale determinants of bacterial diversity in soil.

Vos M, Wolf AB, Jennings SJ, Kowalchuk GA.

FEMS Microbiol Rev. 2013 Nov;37(6):936-54. doi: 10.1111/1574-6976.12023. Epub 2013 May 9. Review.

25.

Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics.

Drigo B, Kowalchuk GA, Knapp BA, Pijl AS, Boschker HT, van Veen JA.

Glob Chang Biol. 2013 Feb;19(2):621-36. doi: 10.1111/gcb.12045. Epub 2012 Nov 7.

PMID:
23504797
26.

Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf.

Kuramae EE, Hillekens RH, de Hollander M, van der Heijden MG, van den Berg M, van Straalen NM, Kowalchuk GA.

FEMS Microbiol Ecol. 2013 Jun;84(3):519-31. doi: 10.1111/1574-6941.12080. Epub 2013 Feb 19.

27.

Ecology. Bad news for soil carbon sequestration?

Kowalchuk GA.

Science. 2012 Aug 31;337(6098):1049-50. doi: 10.1126/science.1227303. No abstract available.

PMID:
22936765
28.

Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting.

Verbruggen E, Kuramae EE, Hillekens R, de Hollander M, Kiers ET, Röling WF, Kowalchuk GA, van der Heijden MG.

Appl Environ Microbiol. 2012 Oct;78(20):7384-92. Epub 2012 Aug 10.

29.

Unlocking the potential of metagenomics through replicated experimental design.

Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA.

Nat Biotechnol. 2012 Jun 7;30(6):513-20. doi: 10.1038/nbt.2235.

30.

Community assembly, species richness and nestedness of arbuscular mycorrhizal fungi in agricultural soils.

Verbruggen E, Van Der Heijden MG, Weedon JT, Kowalchuk GA, Röling WF.

Mol Ecol. 2012 May;21(10):2341-53. doi: 10.1111/j.1365-294X.2012.05534.x. Epub 2012 Mar 22.

PMID:
22439851
31.

A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity.

Vos M, Quince C, Pijl AS, de Hollander M, Kowalchuk GA.

PLoS One. 2012;7(2):e30600. doi: 10.1371/journal.pone.0030600. Epub 2012 Feb 15.

32.

Variation in local carrying capacity and the individual fate of bacterial colonizers in the phyllosphere.

Remus-Emsermann MN, Tecon R, Kowalchuk GA, Leveau JH.

ISME J. 2012 Apr;6(4):756-65. doi: 10.1038/ismej.2011.209. Epub 2012 Jan 19.

33.

Soil characteristics more strongly influence soil bacterial communities than land-use type.

Kuramae EE, Yergeau E, Wong LC, Pijl AS, van Veen JA, Kowalchuk GA.

FEMS Microbiol Ecol. 2012 Jan;79(1):12-24. doi: 10.1111/j.1574-6941.2011.01192.x.

34.

Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments.

Yergeau E, Bokhorst S, Kang S, Zhou J, Greer CW, Aerts R, Kowalchuk GA.

ISME J. 2012 Mar;6(3):692-702. doi: 10.1038/ismej.2011.124. Epub 2011 Sep 22.

35.

Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis.

Kiers ET, Duhamel M, Beesetty Y, Mensah JA, Franken O, Verbruggen E, Fellbaum CR, Kowalchuk GA, Hart MM, Bago A, Palmer TM, West SA, Vandenkoornhuyse P, Jansa J, Bücking H.

Science. 2011 Aug 12;333(6044):880-2. doi: 10.1126/science.1208473.

36.

Enzymology under global change: organic nitrogen turnover in alpine and sub-Arctic soils.

Weedon JT, Aerts R, Kowalchuk GA, van Bodegom PM.

Biochem Soc Trans. 2011 Jan;39(1):309-14. doi: 10.1042/BST0390309. Review.

PMID:
21265794
37.

Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities.

Epelde L, Becerril JM, Kowalchuk GA, Deng Y, Zhou J, Garbisu C.

Appl Environ Microbiol. 2010 Dec;76(23):7843-53. doi: 10.1128/AEM.01045-10. Epub 2010 Oct 8.

38.

Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on acidobacteria subdivision 6.

Kielak AM, van Veen JA, Kowalchuk GA.

Appl Environ Microbiol. 2010 Oct;76(20):6769-77. doi: 10.1128/AEM.00343-10. Epub 2010 Aug 20.

39.

Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils.

Yergeau E, Bezemer TM, Hedlund K, Mortimer SR, Kowalchuk GA, Van Der Putten WH.

Environ Microbiol. 2010 Aug;12(8):2096-106. doi: 10.1111/j.1462-2920.2009.02053.x. Epub 2009 Sep 16.

PMID:
21966905
40.

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2.

Drigo B, Pijl AS, Duyts H, Kielak AM, Gamper HA, Houtekamer MJ, Boschker HT, Bodelier PL, Whiteley AS, van Veen JA, Kowalchuk GA.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10938-42. doi: 10.1073/pnas.0912421107. Epub 2010 Jun 1.

41.

Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils.

Verbruggen E, Röling WF, Gamper HA, Kowalchuk GA, Verhoef HA, van der Heijden MG.

New Phytol. 2010 Jun;186(4):968-79. doi: 10.1111/j.1469-8137.2010.03230.x. Epub 2010 Mar 22.

42.

Microbial secondary succession in a chronosequence of chalk grasslands.

Kuramae EE, Gamper HA, Yergeau E, Piceno YM, Brodie EL, Desantis TZ, Andersen GL, van Veen JA, Kowalchuk GA.

ISME J. 2010 May;4(5):711-5. doi: 10.1038/ismej.2010.11. Epub 2010 Feb 18.

PMID:
20164861
43.

Molecular trait indicators: moving beyond phylogeny in arbuscular mycorrhizal ecology.

Gamper HA, van der Heijden MG, Kowalchuk GA.

New Phytol. 2010 Jan;185(1):67-82. doi: 10.1111/j.1469-8137.2009.03058.x. Epub 2009 Oct 23. Review.

44.

Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil.

Kielak A, Rodrigues JL, Kuramae EE, Chain PS, van Veen JA, Kowalchuk GA.

FEMS Microbiol Ecol. 2010 Jan;71(1):23-33. doi: 10.1111/j.1574-6941.2009.00785.x.

45.

Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel internal amplification control approach using Biotrove OpenArrays.

van Doorn R, Klerks MM, van Gent-Pelzer MP, Speksnijder AG, Kowalchuk GA, Schoen CD.

Appl Environ Microbiol. 2009 Nov;75(22):7253-60. doi: 10.1128/AEM.00796-09. Epub 2009 Oct 2.

46.

Specific rhizosphere bacterial and fungal groups respond differently to elevated atmospheric CO(2).

Drigo B, van Veen JA, Kowalchuk GA.

ISME J. 2009 Oct;3(10):1204-17. doi: 10.1038/ismej.2009.65. Epub 2009 Jun 18.

PMID:
19536195
47.

Robust detection and identification of multiple oomycetes and fungi in environmental samples by using a novel cleavable padlock probe-based ligation detection assay.

van Doorn R, Slawiak M, Szemes M, Dullemans AM, Bonants P, Kowalchuk GA, Schoen CD.

Appl Environ Microbiol. 2009 Jun;75(12):4185-93. doi: 10.1128/AEM.00071-09. Epub 2009 Apr 24.

48.

Bacteria, not archaea, restore nitrification in a zinc-contaminated soil.

Mertens J, Broos K, Wakelin SA, Kowalchuk GA, Springael D, Smolders E.

ISME J. 2009 Aug;3(8):916-23. doi: 10.1038/ismej.2009.39. Epub 2009 Apr 23.

PMID:
19387487
49.

Phylogenetic diversity of Acidobacteria in a former agricultural soil.

Kielak A, Pijl AS, van Veen JA, Kowalchuk GA.

ISME J. 2009 Mar;3(3):378-82. doi: 10.1038/ismej.2008.113. Epub 2008 Nov 20.

PMID:
19020558
50.

Environmental microarray analyses of Antarctic soil microbial communities.

Yergeau E, Schoondermark-Stolk SA, Brodie EL, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL, Kowalchuk GA.

ISME J. 2009 Mar;3(3):340-51. doi: 10.1038/ismej.2008.111. Epub 2008 Nov 20.

PMID:
19020556

Supplemental Content

Loading ...
Support Center