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Items: 41

1.

Chronic Dengue Virus Panencephalitis in a Patient with Progressive Dementia with Extrapyramidal Features.

Johnson TP, Larman HB, Lee MH, Whitehead SS, Kowalak J, Toro C, Lau CC, Kim J, Johnson KR, Reoma LB, Faustin A, Pardo CA, Kottapalli S, Howard J, Monaco D, Weisfeld-Adams J, Blackstone C, Galetta S, Snuderl M, Gahl WA, Kister I, Nath A.

Ann Neurol. 2019 Nov;86(5):695-703. doi: 10.1002/ana.25588. Epub 2019 Sep 11.

PMID:
31461177
2.

Angiotensin II mediates the axonal trafficking of tyrosine hydroxylase and dopamine β-hydroxylase mRNAs and enhances norepinephrine synthesis in primary sympathetic neurons.

Aschrafi A, Berndt A, Kowalak JA, Gale JR, Gioio AE, Kaplan BB.

J Neurochem. 2019 Sep;150(6):666-677. doi: 10.1111/jnc.14821. Epub 2019 Jul 31.

PMID:
31306490
3.

Nodding syndrome may be an autoimmune reaction to the parasitic worm Onchocerca volvulus.

Johnson TP, Tyagi R, Lee PR, Lee MH, Johnson KR, Kowalak J, Elkahloun A, Medynets M, Hategan A, Kubofcik J, Sejvar J, Ratto J, Bunga S, Makumbi I, Aceng JR, Nutman TB, Dowell SF, Nath A.

Sci Transl Med. 2017 Feb 15;9(377). pii: eaaf6953. doi: 10.1126/scitranslmed.aaf6953.

4.

Molecular determinants of cytochrome C oxidase IV mRNA axonal trafficking.

Kar AN, Vargas JNS, Chen CY, Kowalak JA, Gioio AE, Kaplan BB.

Mol Cell Neurosci. 2017 Apr;80:32-43. doi: 10.1016/j.mcn.2017.01.008. Epub 2017 Feb 1.

5.

Axonal localization and mitochondrial association of precursor microRNA 338.

Vargas JN, Kar AN, Kowalak JA, Gale JR, Aschrafi A, Chen CY, Gioio AE, Kaplan BB.

Cell Mol Life Sci. 2016 Nov;73(22):4327-4340. Epub 2016 May 26.

6.

A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12.

Strader MB, Hervey WJ 4th, Costantino N, Fujigaki S, Chen CY, Akal-Strader A, Ihunnah CA, Makusky AJ, Court DL, Markey SP, Kowalak JA.

J Proteome Res. 2013 Mar 1;12(3):1289-99. doi: 10.1021/pr3009435. Epub 2013 Feb 1.

7.

Proteomic Analysis of TRPC Channels.

Lockwich T, Makusky A, Kowalak JA, Markey SP, Ambudkar IS.

In: Zhu MX, editor. TRP Channels. Boca Raton (FL): CRC Press/Taylor & Francis; 2011. Chapter 5.

8.

A proteomic and transcriptomic approach reveals new insight into beta-methylthiolation of Escherichia coli ribosomal protein S12.

Strader MB, Costantino N, Elkins CA, Chen CY, Patel I, Makusky AJ, Choy JS, Court DL, Markey SP, Kowalak JA.

Mol Cell Proteomics. 2011 Mar;10(3):M110.005199. doi: 10.1074/mcp.M110.005199. Epub 2010 Dec 17.

9.

ABRF-PRG05: de novo peptide sequence determination.

Falick AM, Kowalak JA, Lane WS, Phinney BS, Turck CW, Weintraub ST, West KA, Neubert TA.

J Biomol Tech. 2008 Sep;19(4):251-7.

10.

Analysis of TRPC3-interacting proteins by tandem mass spectrometry.

Lockwich T, Pant J, Makusky A, Jankowska-Stephens E, Kowalak JA, Markey SP, Ambudkar IS.

J Proteome Res. 2008 Mar;7(3):979-89. doi: 10.1021/pr070496k. Epub 2008 Jan 19.

PMID:
18205297
11.

Murine ccl2/cx3cr1 deficiency results in retinal lesions mimicking human age-related macular degeneration.

Tuo J, Bojanowski CM, Zhou M, Shen D, Ross RJ, Rosenberg KI, Cameron DJ, Yin C, Kowalak JA, Zhuang Z, Zhang K, Chan CC.

Invest Ophthalmol Vis Sci. 2007 Aug;48(8):3827-36.

12.

The Association of Biomolecular Resource Facilities Proteomics Research Group 2006 study: relative protein quantitation.

Turck CW, Falick AM, Kowalak JA, Lane WS, Lilley KS, Phinney BS, Weintraub ST, Witkowska HE, Yates NA; Association of Biomolecula Resource Facilities Proteomics Research Group.

Mol Cell Proteomics. 2007 Aug;6(8):1291-8. Epub 2007 May 18.

13.

ABRF-PRG04: differentiation of protein isoforms.

Arnott D, Gawinowicz MA, Kowalak JA, Lane WS, Speicher KD, Turck CW, West KA, Neubert TA.

J Biomol Tech. 2007 Apr;18(2):124-34.

14.

Proteomic analysis of hemangioblastoma cyst fluid.

Gläsker S, Vortmeyer AO, Lonser RR, Lubensky IA, Okamoto H, Xia JB, Li J, Milne E, Kowalak JA, Oldfield EH, Zhuang Z.

Cancer Biol Ther. 2006 May;5(5):549-53. Epub 2006 May 6.

PMID:
16627978
15.

Nitration and inactivation of IDO by peroxynitrite.

Fujigaki H, Saito K, Lin F, Fujigaki S, Takahashi K, Martin BM, Chen CY, Masuda J, Kowalak J, Takikawa O, Seishima M, Markey SP.

J Immunol. 2006 Jan 1;176(1):372-9.

16.

From tissue phenotype to proteotype: sensitive protein identification in microdissected tumor tissue.

Zhuang Z, Huang S, Kowalak JA, Shi Y, Lei J, Furuta M, Lee YS, Lubensky IA, Rodgers GP, Cornelius AS, Weil RJ, Teh BT, Vortmeyer AO.

Int J Oncol. 2006 Jan;28(1):103-10.

PMID:
16327985
17.

Assessing data quality of peptide mass spectra obtained by quadrupole ion trap mass spectrometry.

Xu M, Geer LY, Bryant SH, Roth JS, Kowalak JA, Maynard DM, Markey SP.

J Proteome Res. 2005 Mar-Apr;4(2):300-5.

PMID:
15822904
19.

Regulation of alpha-synuclein expression by poly (ADP ribose) polymerase-1 (PARP-1) binding to the NACP-Rep1 polymorphic site upstream of the SNCA gene.

Chiba-Falek O, Kowalak JA, Smulson ME, Nussbaum RL.

Am J Hum Genet. 2005 Mar;76(3):478-92. Epub 2005 Jan 25.

20.

DBParser: web-based software for shotgun proteomic data analyses.

Yang X, Dondeti V, Dezube R, Maynard DM, Geer LY, Epstein J, Chen X, Markey SP, Kowalak JA.

J Proteome Res. 2004 Sep-Oct;3(5):1002-8.

PMID:
15473689
21.

Open mass spectrometry search algorithm.

Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH.

J Proteome Res. 2004 Sep-Oct;3(5):958-64.

PMID:
15473683
22.

Characterizing complex peptide mixtures using a multi-dimensional liquid chromatography-mass spectrometry system: Saccharomyces cerevisiae as a model system.

Maynard DM, Masuda J, Yang X, Kowalak JA, Markey SP.

J Chromatogr B Analyt Technol Biomed Life Sci. 2004 Oct 15;810(1):69-76.

PMID:
15358309
23.

Gbetagamma affinity for bovine rhodopsin is determined by the carboxyl-terminal sequences of the gamma subunit.

Jian X, Clark WA, Kowalak J, Markey SP, Simonds WF, Northup JK.

J Biol Chem. 2001 Dec 21;276(51):48518-25. Epub 2001 Oct 15.

24.

Three distinct stages of lens opacification in transgenic mice expressing the HIV-1 protease.

Tumminia SJ, Clark JI, Richiert DM, Mitton KP, Duglas-Tabor Y, Kowalak JA, Garland DL, Russell P.

Exp Eye Res. 2001 Feb;72(2):115-21.

PMID:
11161727
25.

Complement factor H is a serum-binding protein for adrenomedullin, and the resulting complex modulates the bioactivities of both partners.

Pio R, Martinez A, Unsworth EJ, Kowalak JA, Bengoechea JA, Zipfel PF, Elsasser TH, Cuttitta F.

J Biol Chem. 2001 Apr 13;276(15):12292-300. Epub 2000 Dec 14.

26.

Tracking pathology with proteomics: identification of in vivo degradation products of alphaB-crystallin.

Colvis CM, Duglas-Tabor Y, Werth KB, Vieira NE, Kowalak JA, Janjani A, Yergey AL, Garland DL.

Electrophoresis. 2000 Jun;21(11):2219-27.

PMID:
10892732
27.

Identities and phylogenetic comparisons of posttranscriptional modifications in 16 S ribosomal RNA from Haloferax volcanii.

Kowalak JA, Bruenger E, Crain PF, McCloskey JA.

J Biol Chem. 2000 Aug 11;275(32):24484-9.

28.

An atypical form of alphaB-crystallin is present in high concentration in some human cataractous lenses. Identification and characterization of aberrant N- and C-terminal processing.

Jimenez-Asensio J, Colvis CM, Kowalak JA, Duglas-Tabor Y, Datiles MB, Moroni M, Mura U, Rao CM, Balasubramanian D, Janjani A, Garland D.

J Biol Chem. 1999 Nov 5;274(45):32287-94.

29.

TIP39: a new neuropeptide and PTH2-receptor agonist from hypothalamus.

Usdin TB, Hoare SR, Wang T, Mezey E, Kowalak JA.

Nat Neurosci. 1999 Nov;2(11):941-3. No abstract available.

PMID:
10526330
30.
32.

Primary structure of a new neuropeptide, cerebral peptide 2, purified from cerebral ganglia of Aplysia.

Phares GA, Walent JH, Niece RL, Kumar SB, Ericsson LH, Kowalak JA, Lloyd PE.

Biochemistry. 1996 May 7;35(18):5921-7.

PMID:
8639554
33.

Structural characterization of U*-1915 in domain IV from Escherichia coli 23S ribosomal RNA as 3-methylpseudouridine.

Kowalak JA, Bruenger E, Hashizume T, Peltier JM, Ofengand J, McCloskey JA.

Nucleic Acids Res. 1996 Feb 15;24(4):688-93.

34.

Posttranscriptional modification of the central loop of domain V in Escherichia coli 23 S ribosomal RNA.

Kowalak JA, Bruenger E, McCloskey JA.

J Biol Chem. 1995 Jul 28;270(30):17758-64.

35.

The single pseudouridine residue in Escherichia coli 16S RNA is located at position 516.

Bakin A, Kowalak JA, McCloskey JA, Ofengand J.

Nucleic Acids Res. 1994 Sep 11;22(18):3681-4.

36.

The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles.

Kowalak JA, Dalluge JJ, McCloskey JA, Stetter KO.

Biochemistry. 1994 Jun 28;33(25):7869-76.

PMID:
7516708
37.

beta-D-glucosyl-hydroxymethyluracil: a novel modified base present in the DNA of the parasitic protozoan T. brucei.

Gommers-Ampt JH, Van Leeuwen F, de Beer AL, Vliegenthart JF, Dizdaroglu M, Kowalak JA, Crain PF, Borst P.

Cell. 1993 Dec 17;75(6):1129-36.

PMID:
8261512
38.

A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry.

Kowalak JA, Pomerantz SC, Crain PF, McCloskey JA.

Nucleic Acids Res. 1993 Sep 25;21(19):4577-85.

39.

Determination of oligonucleotide composition from mass spectrometrically measured molecular weight.

Pomerantz SC, Kowalak JA, McCloskey JA.

J Am Soc Mass Spectrom. 1993 Mar;4(3):204-9. doi: 10.1016/1044-0305(93)85082-9.

PMID:
24234848
40.

5S rRNA modification in the hyperthermophilic archaea Sulfolobus solfataricus and Pyrodictium occultum.

Bruenger E, Kowalak JA, Kuchino Y, McCloskey JA, Mizushima H, Stetter KO, Crain PF.

FASEB J. 1993 Jan;7(1):196-200.

PMID:
8422966
41.

Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria).

Edmonds CG, Crain PF, Gupta R, Hashizume T, Hocart CH, Kowalak JA, Pomerantz SC, Stetter KO, McCloskey JA.

J Bacteriol. 1991 May;173(10):3138-48.

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