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Items: 31

2.

Can Virtual Contrast Enhancement in Brain MRI Replace Gadolinium?: A Feasibility Study.

Kleesiek J, Morshuis JN, Isensee F, Deike-Hofmann K, Paech D, Kickingereder P, Köthe U, Rother C, Forsting M, Wick W, Bendszus M, Schlemmer HP, Radbruch A.

Invest Radiol. 2019 Oct;54(10):653-660. doi: 10.1097/RLI.0000000000000583.

PMID:
31261293
3.

Uncertainty-aware performance assessment of optical imaging modalities with invertible neural networks.

Adler TJ, Ardizzone L, Vemuri A, Ayala L, Gröhl J, Kirchner T, Wirkert S, Kruse J, Rother C, Köthe U, Maier-Hein L.

Int J Comput Assist Radiol Surg. 2019 Jun;14(6):997-1007. doi: 10.1007/s11548-019-01939-9. Epub 2019 Mar 22.

PMID:
30903566
4.

Towards end-to-end likelihood-free inference with convolutional neural networks.

Radev ST, Mertens UK, Voss A, Köthe U.

Br J Math Stat Psychol. 2019 Feb 22. doi: 10.1111/bmsp.12159. [Epub ahead of print]

PMID:
30793299
5.

Molecular Determinants for 23S rRNA Recognition and Modification by the E. coli Pseudouridine Synthase RluE.

Tillault AS, Schultz SK, Wieden HJ, Kothe U.

J Mol Biol. 2018 Apr 27;430(9):1284-1294. doi: 10.1016/j.jmb.2018.03.011. Epub 2018 Mar 16.

6.

Efficient RNA pseudouridylation by eukaryotic H/ACA ribonucleoproteins requires high affinity binding and correct positioning of guide RNA.

Caton EA, Kelly EK, Kamalampeta R, Kothe U.

Nucleic Acids Res. 2018 Jan 25;46(2):905-916. doi: 10.1093/nar/gkx1167.

7.

Neuron Segmentation With High-Level Biological Priors.

Krasowski NE, Beier T, Knott GW, Kothe U, Hamprecht FA, Kreshuk A.

IEEE Trans Med Imaging. 2018 Apr;37(4):829-839. doi: 10.1109/TMI.2017.2712360. Epub 2017 Jun 6.

PMID:
28600240
8.

Eukaryotic stand-alone pseudouridine synthases - RNA modifying enzymes and emerging regulators of gene expression?

Rintala-Dempsey AC, Kothe U.

RNA Biol. 2017 Sep 2;14(9):1185-1196. doi: 10.1080/15476286.2016.1276150. Epub 2017 Jan 3. Review.

9.

RNA modification enzyme TruB is a tRNA chaperone.

Keffer-Wilkes LC, Veerareddygari GR, Kothe U.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14306-14311. Epub 2016 Nov 14.

10.

Virtual Raters for Reproducible and Objective Assessments in Radiology.

Kleesiek J, Petersen J, Döring M, Maier-Hein K, Köthe U, Wick W, Hamprecht FA, Bendszus M, Biller A.

Sci Rep. 2016 Apr 27;6:25007. doi: 10.1038/srep25007.

11.

Contribution of two conserved histidines to the dual activity of archaeal RNA guide-dependent and -independent pseudouridine synthase Cbf5.

Tillault AS, Fourmann JB, Loegler C, Wieden HJ, Kothe U, Charpentier B.

RNA. 2015 Jul;21(7):1233-9. doi: 10.1261/rna.051425.115. Epub 2015 May 19.

12.

SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy.

Köthe U, Herrmannsdörfer F, Kats I, Hamprecht FA.

Histochem Cell Biol. 2014 Jun;141(6):613-27. doi: 10.1007/s00418-014-1211-4. Epub 2014 Apr 11.

PMID:
24722686
13.

An arginine-aspartate network in the active site of bacterial TruB is critical for catalyzing pseudouridine formation.

Friedt J, Leavens FM, Mercier E, Wieden HJ, Kothe U.

Nucleic Acids Res. 2014 Apr;42(6):3857-70. doi: 10.1093/nar/gkt1331. Epub 2013 Dec 26.

14.

tRNA binding, positioning, and modification by the pseudouridine synthase Pus10.

Kamalampeta R, Keffer-Wilkes LC, Kothe U.

J Mol Biol. 2013 Oct 23;425(20):3863-74. doi: 10.1016/j.jmb.2013.05.022. Epub 2013 Jun 4.

PMID:
23743107
15.

Active learning for convenient annotation and classification of secondary ion mass spectrometry images.

Hanselmann M, Röder J, Köthe U, Renard BY, Heeren RM, Hamprecht FA.

Anal Chem. 2013 Jan 2;85(1):147-55. doi: 10.1021/ac3023313. Epub 2012 Dec 13.

PMID:
23157438
16.
17.

Carving: scalable interactive segmentation of neural volume electron microscopy images.

Straehle CN, Köthe U, Knott G, Hamprecht FA.

Med Image Comput Comput Assist Interv. 2011;14(Pt 1):653-60.

PMID:
22003674
18.

Pre-steady-state kinetic analysis of the three Escherichia coli pseudouridine synthases TruB, TruA, and RluA reveals uniformly slow catalysis.

Wright JR, Keffer-Wilkes LC, Dobing SR, Kothe U.

RNA. 2011 Dec;17(12):2074-84. doi: 10.1261/rna.2905811. Epub 2011 Oct 13.

19.

SIMA: simultaneous multiple alignment of LC/MS peak lists.

Voss B, Hanselmann M, Renard BY, Lindner MS, Köthe U, Kirchner M, Hamprecht FA.

Bioinformatics. 2011 Apr 1;27(7):987-93. doi: 10.1093/bioinformatics/btr051. Epub 2011 Feb 3.

PMID:
21296750
20.

Deuteration distribution estimation with improved sequence coverage for HX/MS experiments.

Lou X, Kirchner M, Renard BY, Köthe U, Boppel S, Graf C, Lee CT, Steen JA, Steen H, Mayer MP, Hamprecht FA.

Bioinformatics. 2010 Jun 15;26(12):1535-41. doi: 10.1093/bioinformatics/btq165. Epub 2010 May 3.

PMID:
20439256
21.

Computational protein profile similarity screening for quantitative mass spectrometry experiments.

Kirchner M, Renard BY, Köthe U, Pappin DJ, Hamprecht FA, Steen H, Steen JA.

Bioinformatics. 2010 Jan 1;26(1):77-83. doi: 10.1093/bioinformatics/btp607. Epub 2009 Oct 27.

PMID:
19861354
22.

Toward digital staining using imaging mass spectrometry and random forests.

Hanselmann M, Köthe U, Kirchner M, Renard BY, Amstalden ER, Glunde K, Heeren RM, Hamprecht FA.

J Proteome Res. 2009 Jul;8(7):3558-67. doi: 10.1021/pr900253y.

23.

Codon reading by tRNAAla with modified uridine in the wobble position.

Kothe U, Rodnina MV.

Mol Cell. 2007 Jan 12;25(1):167-74.

24.
25.

Single-step purification of specific tRNAs by hydrophobic tagging.

Kothe U, Paleskava A, Konevega AL, Rodnina MV.

Anal Biochem. 2006 Sep 1;356(1):148-50. Epub 2006 May 11. No abstract available.

PMID:
16750812
26.

Control of phosphate release from elongation factor G by ribosomal protein L7/12.

Savelsbergh A, Mohr D, Kothe U, Wintermeyer W, Rodnina MV.

EMBO J. 2005 Dec 21;24(24):4316-23. Epub 2005 Nov 17.

27.

Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation.

Diaconu M, Kothe U, Schlünzen F, Fischer N, Harms JM, Tonevitsky AG, Stark H, Rodnina MV, Wahl MC.

Cell. 2005 Jul 1;121(7):991-1004.

28.

Recognition and selection of tRNA in translation.

Rodnina MV, Gromadski KB, Kothe U, Wieden HJ.

FEBS Lett. 2005 Feb 7;579(4):938-42. Review.

29.

Interaction of helix D of elongation factor Tu with helices 4 and 5 of protein L7/12 on the ribosome.

Kothe U, Wieden HJ, Mohr D, Rodnina MV.

J Mol Biol. 2004 Mar 5;336(5):1011-21.

PMID:
15037065
30.

Quantitative assessment of carnitine loss during hemodialysis and hemofiltration.

Leschke M, Rumpf KW, Eisenhauer T, Fuchs C, Becker K, Köthe U, Scheler F.

Kidney Int Suppl. 1983 Dec;16:S143-6.

PMID:
6588245
31.

Quantitative assessment of carnitine loss during haemodialysis and haemofiltration.

Rumpf KW, Leschke M, Eisenhauer T, Becker K, Köthe U, Scheler F.

Proc Eur Dial Transplant Assoc. 1983;19:298-301.

PMID:
6878244

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