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Items: 25

1.

A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment.

Einson JE, Rani A, You X, Rodriguez AA, Randell CL, Barnaba T, Mammel MK, Kotewicz ML, Elkins CA, Sela DA.

Appl Environ Microbiol. 2018 Oct 30;84(22). pii: e01680-18. doi: 10.1128/AEM.01680-18. Print 2018 Nov 15.

2.

Draft Genome Sequences of Escherichia albertii, Escherichia fergusonii, and Strains Belonging to Six Cryptic Lineages of Escherichia spp.

Gangiredla J, Mammel MK, Barnaba TJ, Tartera C, Gebru ST, Patel IR, Leonard SR, Kotewicz ML, Lampel KA, Elkins CA, Lacher DW.

Genome Announc. 2018 May 3;6(18). pii: e00271-18. doi: 10.1128/genomeA.00271-18.

3.

Species-Wide Collection of Escherichia coli Isolates for Examination of Genomic Diversity.

Gangiredla J, Mammel MK, Barnaba TJ, Tartera C, Gebru ST, Patel IR, Leonard SR, Kotewicz ML, Lampel KA, Elkins CA, Lacher DW.

Genome Announc. 2017 Dec 14;5(50). pii: e01321-17. doi: 10.1128/genomeA.01321-17.

4.
5.

Complete Genome Sequences of Four Enterohemolysin-Positive (ehxA) Enterocyte Effacement-Negative Shiga Toxin-Producing Escherichia coli Strains.

Lorenz SC, Kotewicz ML, Hoffmann M, Gonzalez-Escalona N, Fischer M, Kase JA.

Genome Announc. 2016 Sep 1;4(5). pii: e00846-16. doi: 10.1128/genomeA.00846-16.

6.

Development of a Custom-Designed, Pan Genomic DNA Microarray to Characterize Strain-Level Diversity among Cronobacter spp.

Tall BD, Gangiredla J, Gopinath GR, Yan Q, Chase HR, Lee B, Hwang S, Trach L, Park E, Yoo Y, Chung T, Jackson SA, Patel IR, Sathyamoorthy V, Pava-Ripoll M, Kotewicz ML, Carter L, Iversen C, Pagotto F, Stephan R, Lehner A, Fanning S, Grim CJ.

Front Pediatr. 2015 Apr 30;3:36. doi: 10.3389/fped.2015.00036. eCollection 2015.

7.

Whole-genome sequencing of gentamicin-resistant Campylobacter coli isolated from U.S. retail meats reveals novel plasmid-mediated aminoglycoside resistance genes.

Chen Y, Mukherjee S, Hoffmann M, Kotewicz ML, Young S, Abbott J, Luo Y, Davidson MK, Allard M, McDermott P, Zhao S.

Antimicrob Agents Chemother. 2013 Nov;57(11):5398-405. doi: 10.1128/AAC.00669-13. Epub 2013 Aug 19.

8.

Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation.

Grim CJ, Kotewicz ML, Power KA, Gopinath G, Franco AA, Jarvis KG, Yan QQ, Jackson SA, Sathyamoorthy V, Hu L, Pagotto F, Iversen C, Lehner A, Stephan R, Fanning S, Tall BD.

BMC Genomics. 2013 May 31;14:366. doi: 10.1186/1471-2164-14-366.

9.

Identification and characterization of five new molecular serogroups of Cronobacter spp.

Jarvis KG, Yan QQ, Grim CJ, Power KA, Franco AA, Hu L, Gopinath G, Sathyamoorthy V, Kotewicz ML, Kothary MH, Lee C, Sadowski J, Fanning S, Tall BD.

Foodborne Pathog Dis. 2013 Apr;10(4):343-52. doi: 10.1089/fpd.2012.1344.

PMID:
23566272
10.

The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.

Gopinath G, Hari K, Jain R, Mammel MK, Kothary MH, Franco AA, Grim CJ, Jarvis KG, Sathyamoorthy V, Hu L, Datta AR, Patel IR, Jackson SA, Gangiredla J, Kotewicz ML, LeClerc JE, Wekell M, McCardell BA, Solomotis MD, Tall BD.

Food Microbiol. 2013 Jun;34(2):303-18. doi: 10.1016/j.fm.2013.01.001. Epub 2013 Jan 23.

PMID:
23541197
11.

Genomic paradigms for food-borne enteric pathogen analysis at the USFDA: case studies highlighting method utility, integration and resolution.

Elkins CA, Kotewicz ML, Jackson SA, Lacher DW, Abu-Ali GS, Patel IR.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2013;30(8):1422-36. doi: 10.1080/19440049.2012.743192. Epub 2012 Dec 3.

PMID:
23199033
12.

Rapid genomic-scale analysis of Escherichia coli O104:H4 by using high-resolution alternative methods to next-generation sequencing.

Jackson SA, Kotewicz ML, Patel IR, Lacher DW, Gangiredla J, Elkins CA.

Appl Environ Microbiol. 2012 Mar;78(5):1601-5. doi: 10.1128/AEM.07464-11. Epub 2011 Dec 30.

13.

Optical mapping and 454 sequencing of Escherichia coli O157 : H7 isolates linked to the US 2006 spinach-associated outbreak.

Kotewicz ML, Mammel MK, LeClerc JE, Cebula TA.

Microbiology. 2008 Nov;154(Pt 11):3518-28. doi: 10.1099/mic.0.2008/019026-0.

PMID:
18957604
14.

Optical maps distinguish individual strains of Escherichia coli O157 : H7.

Kotewicz ML, Jackson SA, LeClerc JE, Cebula TA.

Microbiology. 2007 Jun;153(Pt 6):1720-33.

PMID:
17526830
15.

Genomic variability among enteric pathogens: the case of the mutS-rpoS intergenic region.

Kotewicz ML, Brown EW, Eugene LeClerc J, Cebula TA.

Trends Microbiol. 2003 Jan;11(1):2-6.

PMID:
12526846
16.

Evolution of multi-gene segments in the mutS-rpoS intergenic region of Salmonella enterica serovar Typhimurium LT2.

Kotewicz ML, Li B, Levy DD, LeClerc JE, Shifflet AW, Cebula TA.

Microbiology. 2002 Aug;148(Pt 8):2531-40.

PMID:
12177346
17.

Detection of recombination among Salmonella enterica strains using the incongruence length difference test.

Brown EW, Kotewicz ML, Cebula TA.

Mol Phylogenet Evol. 2002 Jul;24(1):102-20.

PMID:
12128032
18.

Three R's of bacterial evolution: how replication, repair, and recombination frame the origin of species.

Brown EW, LeClerc JE, Kotewicz ML, Cebula TA.

Environ Mol Mutagen. 2001;38(2-3):248-60. Review.

PMID:
11746762
19.

Genetic Bit Analysis: a solid phase method for typing single nucleotide polymorphisms.

Nikiforov TT, Rendle RB, Goelet P, Rogers YH, Kotewicz ML, Anderson S, Trainor GL, Knapp MR.

Nucleic Acids Res. 1994 Oct 11;22(20):4167-75.

21.

Isolation of cloned Moloney murine leukemia virus reverse transcriptase lacking ribonuclease H activity.

Kotewicz ML, Sampson CM, D'Alessio JM, Gerard GF.

Nucleic Acids Res. 1988 Jan 11;16(1):265-77.

22.
23.

Cloning and overexpression of Moloney murine leukemia virus reverse transcriptase in Escherichia coli.

Kotewicz ML, D'Alessio JM, Driftmier KM, Blodgett KP, Gerard GF.

Gene. 1985;35(3):249-58.

PMID:
2412939
24.

Protection against exonuclease III digestion. A new way to investigate protein-DNA interactions.

Schreier PH, Davies RW, Kotewicz ML.

FEBS Lett. 1980 Jan 1;109(1):159-63. No abstract available.

25.

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