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Items: 1 to 50 of 63

1.

Diversity of Active Viral Infections within the Sphagnum Microbiome.

Stough JMA, Kolton M, Kostka JE, Weston DJ, Pelletier DA, Wilhelm SW.

Appl Environ Microbiol. 2018 Nov 15;84(23). pii: e01124-18. doi: 10.1128/AEM.01124-18. Print 2018 Dec 1.

PMID:
30217851
2.

Corrigendum to "Degradation of Deepwater Horizon oil buried in a Florida beach influenced by tidal pumping" [Mar. Pollut. Bull. 126 (2018) 488-500].

Huettel M, Overholt WA, Kostka JE, Hagan C, Kaba J, Wells WB, Dudley S.

Mar Pollut Bull. 2018 Aug;133:943. doi: 10.1016/j.marpolbul.2018.06.027. Epub 2018 Jun 14. No abstract available.

PMID:
29910141
3.

Genome Sequences of 15 Klebsiella sp. Isolates from Sugarcane Fields in Colombia's Cauca Valley.

Medina-Cordoba LK, Chande AT, Rishishwar L, Mayer LW, Mariño-Ramírez L, Valderrama-Aguirre LC, Valderrama-Aguirre A, Kostka JE, Jordan IK.

Genome Announc. 2018 Mar 22;6(12). pii: e00104-18. doi: 10.1128/genomeA.00104-18.

4.

Degradation of Deepwater Horizon oil buried in a Florida beach influenced by tidal pumping.

Huettel M, Overholt WA, Kostka JE, Hagan C, Kaba J, Wells WB, Dudley S.

Mar Pollut Bull. 2018 Jan;126:488-500. doi: 10.1016/j.marpolbul.2017.10.061. Epub 2017 Dec 22. Erratum in: Mar Pollut Bull. 2018 Aug;133:943.

PMID:
29421130
5.

Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline.

Gaby JC, Rishishwar L, Valderrama-Aguirre LC, Green SJ, Valderrama-Aguirre A, Jordan IK, Kostka JE.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e01512-17. doi: 10.1128/AEM.01512-17. Print 2018 Feb 15.

6.

The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.

Weston DJ, Turetsky MR, Johnson MG, Granath G, Lindo Z, Belyea LR, Rice SK, Hanson DT, Engelhardt KAM, Schmutz J, Dorrepaal E, Euskirchen ES, Stenøien HK, Szövényi P, Jackson M, Piatkowski BT, Muchero W, Norby RJ, Kostka JE, Glass JB, Rydin H, Limpens J, Tuittila ES, Ullrich KK, Carrell A, Benscoter BW, Chen JG, Oke TA, Nilsson MB, Ranjan P, Jacobson D, Lilleskov EA, Clymo RS, Shaw AJ.

New Phytol. 2018 Jan;217(1):16-25. doi: 10.1111/nph.14860. Epub 2017 Oct 27.

PMID:
29076547
7.

Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota.

Warren MJ, Lin X, Gaby JC, Kretz CB, Kolton M, Morton PL, Pett-Ridge J, Weston DJ, Schadt CW, Kostka JE, Glass JB.

Appl Environ Microbiol. 2017 Jun 30. pii: AEM.01174-17. doi: 10.1128/AEM.01174-17. [Epub ahead of print]

8.

Stability of peatland carbon to rising temperatures.

Wilson RM, Hopple AM, Tfaily MM, Sebestyen SD, Schadt CW, Pfeifer-Meister L, Medvedeff C, McFarlane KJ, Kostka JE, Kolton M, Kolka RK, Kluber LA, Keller JK, Guilderson TP, Griffiths NA, Chanton JP, Bridgham SD, Hanson PJ.

Nat Commun. 2016 Dec 13;7:13723. doi: 10.1038/ncomms13723.

9.

Plants, microorganisms, and soil temperatures contribute to a decrease in methane fluxes on a drained Arctic floodplain.

Kwon MJ, Beulig F, Ilie I, Wildner M, Küsel K, Merbold L, Mahecha MD, Zimov N, Zimov SA, Heimann M, Schuur EAG, Kostka JE, Kolle O, Hilke I, Göckede M.

Glob Chang Biol. 2017 Jun;23(6):2396-2412. doi: 10.1111/gcb.13558. Epub 2016 Nov 30.

PMID:
27901306
10.

Correction for Overholt et al., Hydrocarbon-Degrading Bacteria Exhibit a Species-Specific Response to Dispersed Oil while Moderating Ecotoxicity.

Overholt WA, Marks KP, Romero IC, Hollander DJ, Snell TW, Kostka JE.

Appl Environ Microbiol. 2016 Aug 15;82(17):5477. doi: 10.1128/AEM.01925-16. Print 2016 Sep 1. No abstract available.

11.

The Sphagnum microbiome: new insights from an ancient plant lineage.

Kostka JE, Weston DJ, Glass JB, Lilleskov EA, Shaw AJ, Turetsky MR.

New Phytol. 2016 Jul;211(1):57-64. doi: 10.1111/nph.13993. Epub 2016 May 13. Review.

12.

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community.

Hemme CL, Green SJ, Rishishwar L, Prakash O, Pettenato A, Chakraborty R, Deutschbauer AM, Van Nostrand JD, Wu L, He Z, Jordan IK, Hazen TC, Arkin AP, Kostka JE, Zhou J.

MBio. 2016 Apr 5;7(2):e02234-15. doi: 10.1128/mBio.02234-15.

13.

Alpha- and Gammaproteobacterial Methanotrophs Codominate the Active Methane-Oxidizing Communities in an Acidic Boreal Peat Bog.

Esson KC, Lin X, Kumaresan D, Chanton JP, Murrell JC, Kostka JE.

Appl Environ Microbiol. 2016 Apr 4;82(8):2363-2371. doi: 10.1128/AEM.03640-15. Print 2016 Apr.

14.

Hydrocarbon-Degrading Bacteria Exhibit a Species-Specific Response to Dispersed Oil while Moderating Ecotoxicity.

Overholt WA, Marks KP, Romero IC, Hollander DJ, Snell TW, Kostka JE.

Appl Environ Microbiol. 2015 Nov 6;82(2):518-27. doi: 10.1128/AEM.02379-15. Print 2016 Jan 15. Erratum in: Appl Environ Microbiol. 2016 Sep 1;82(17):5477.

15.

Sedimentation Pulse in the NE Gulf of Mexico following the 2010 DWH Blowout.

Brooks GR, Larson RA, Schwing PT, Romero I, Moore C, Reichart GJ, Jilbert T, Chanton JP, Hastings DW, Overholt WA, Marks KP, Kostka JE, Holmes CW, Hollander D.

PLoS One. 2015 Jul 14;10(7):e0132341. doi: 10.1371/journal.pone.0132341. eCollection 2015.

16.

Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat.

Lin X, Handley KM, Gilbert JA, Kostka JE.

ISME J. 2015 Dec;9(12):2740-4. doi: 10.1038/ismej.2015.77. Epub 2015 May 22.

17.

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill.

Rodriguez-R LM, Overholt WA, Hagan C, Huettel M, Kostka JE, Konstantinidis KT.

ISME J. 2015 Sep;9(9):1928-40. doi: 10.1038/ismej.2015.5. Epub 2015 Feb 17.

18.

Microbial responses to the Deepwater Horizon oil spill: from coastal wetlands to the deep sea.

King GM, Kostka JE, Hazen TC, Sobecky PA.

Ann Rev Mar Sci. 2015;7:377-401. doi: 10.1146/annurev-marine-010814-015543. Epub 2014 Sep 17. Review.

PMID:
25251273
19.

The metabolic pathways and environmental controls of hydrocarbon biodegradation in marine ecosystems.

Kostka JE, Teske AP, Joye SB, Head IM.

Front Microbiol. 2014 Sep 4;5:471. doi: 10.3389/fmicb.2014.00471. eCollection 2014. No abstract available.

20.

Temperature response of denitrification and anaerobic ammonium oxidation rates and microbial community structure in Arctic fjord sediments.

Canion A, Overholt WA, Kostka JE, Huettel M, Lavik G, Kuypers MM.

Environ Microbiol. 2014 Oct;16(10):3331-44. doi: 10.1111/1462-2920.12593. Epub 2014 Sep 22.

PMID:
25115991
21.

Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA.

Lin X, Tfaily MM, Steinweg JM, Chanton P, Esson K, Yang ZK, Chanton JP, Cooper W, Schadt CW, Kostka JE.

Appl Environ Microbiol. 2014 Jun;80(11):3518-30. doi: 10.1128/AEM.00205-14. Epub 2014 Mar 28.

22.

Microbial metabolic potential for carbon degradation and nutrient (nitrogen and phosphorus) acquisition in an ombrotrophic peatland.

Lin X, Tfaily MM, Green SJ, Steinweg JM, Chanton P, Imvittaya A, Chanton JP, Cooper W, Schadt C, Kostka JE.

Appl Environ Microbiol. 2014 Jun;80(11):3531-40. doi: 10.1128/AEM.00206-14. Epub 2014 Mar 28.

23.

Watershed-scale fungal community characterization along a pH gradient in a subsurface environment cocontaminated with uranium and nitrate.

Jasrotia P, Green SJ, Canion A, Overholt WA, Prakash O, Wafula D, Hubbard D, Watson DB, Schadt CW, Brooks SC, Kostka JE.

Appl Environ Microbiol. 2014 Mar;80(6):1810-20. doi: 10.1128/AEM.03423-13. Epub 2014 Jan 3.

24.

Draft genome sequences for oil-degrading bacterial strains from beach sands impacted by the deepwater horizon oil spill.

Overholt WA, Green SJ, Marks KP, Venkatraman R, Prakash O, Kostka JE.

Genome Announc. 2013 Dec 19;1(6). pii: e01015-13. doi: 10.1128/genomeA.01015-13.

25.

Benthic exchange and biogeochemical cycling in permeable sediments.

Huettel M, Berg P, Kostka JE.

Ann Rev Mar Sci. 2014;6:23-51. doi: 10.1146/annurev-marine-051413-012706. Epub 2013 Aug 21. Review.

PMID:
23987916
26.

Genome sequences for three denitrifying bacterial strains isolated from a uranium- and nitrate-contaminated subsurface environment.

Venkatramanan R, Prakash O, Woyke T, Chain P, Goodwin LA, Watson D, Brooks S, Kostka JE, Green SJ.

Genome Announc. 2013 Jul 5;1(4). pii: e00449-13. doi: 10.1128/genomeA.00449-13.

27.

Isolation and physiological characterization of psychrophilic denitrifying bacteria from permanently cold Arctic fjord sediments (Svalbard, Norway).

Canion A, Prakash O, Green SJ, Jahnke L, Kuypers MM, Kostka JE.

Environ Microbiol. 2013 May;15(5):1606-18. doi: 10.1111/1462-2920.12110. Epub 2013 Mar 26.

PMID:
23530773
28.

The bacterial composition within the Sarracenia purpurea model system: local scale differences and the relationship with the other members of the food web.

Gray SM, Akob DM, Green SJ, Kostka JE.

PLoS One. 2012;7(12):e50969. doi: 10.1371/journal.pone.0050969. Epub 2012 Dec 5.

29.

Microbial cultivation and the role of microbial resource centers in the omics era.

Prakash O, Shouche Y, Jangid K, Kostka JE.

Appl Microbiol Biotechnol. 2013 Jan;97(1):51-62. doi: 10.1007/s00253-012-4533-y. Epub 2012 Nov 9. Review.

PMID:
23138712
30.

Gene Expression Correlates with Process Rates Quantified for Sulfate- and Fe(III)-Reducing Bacteria in U(VI)-Contaminated Sediments.

Akob DM, Lee SH, Sheth M, Küsel K, Watson DB, Palumbo AV, Kostka JE, Chin KJ.

Front Microbiol. 2012 Aug 9;3:280. doi: 10.3389/fmicb.2012.00280. eCollection 2012.

31.

Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities.

Kostka JE, Green SJ, Rishishwar L, Prakash O, Katz LS, Mariño-Ramírez L, Jordan IK, Munk C, Ivanova N, Mikhailova N, Watson DB, Brown SD, Palumbo AV, Brooks SC.

J Bacteriol. 2012 Aug;194(16):4461-2. doi: 10.1128/JB.00871-12.

32.

Microbial community structure and activity linked to contrasting biogeochemical gradients in bog and fen environments of the Glacial Lake Agassiz Peatland.

Lin X, Green S, Tfaily MM, Prakash O, Konstantinidis KT, Corbett JE, Chanton JP, Cooper WT, Kostka JE.

Appl Environ Microbiol. 2012 Oct;78(19):7023-31. doi: 10.1128/AEM.01750-12. Epub 2012 Jul 27.

33.

Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site.

Green SJ, Prakash O, Jasrotia P, Overholt WA, Cardenas E, Hubbard D, Tiedje JM, Watson DB, Schadt CW, Brooks SC, Kostka JE.

Appl Environ Microbiol. 2012 Feb;78(4):1039-47. doi: 10.1128/AEM.06435-11. Epub 2011 Dec 16.

34.

Rhodanobacter denitrificans sp. nov., isolated from nitrate-rich zones of a contaminated aquifer.

Prakash O, Green SJ, Jasrotia P, Overholt WA, Canion A, Watson DB, Brooks SC, Kostka JE.

Int J Syst Evol Microbiol. 2012 Oct;62(Pt 10):2457-62. doi: 10.1099/ijs.0.035840-0. Epub 2011 Nov 25.

PMID:
22140175
35.

Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill.

Kostka JE, Prakash O, Overholt WA, Green SJ, Freyer G, Canion A, Delgardio J, Norton N, Hazen TC, Huettel M.

Appl Environ Microbiol. 2011 Nov;77(22):7962-74. doi: 10.1128/AEM.05402-11. Epub 2011 Sep 23.

36.

Linking specific heterotrophic bacterial populations to bioreduction of uranium and nitrate in contaminated subsurface sediments by using stable isotope probing.

Akob DM, Kerkhof L, Küsel K, Watson DB, Palumbo AV, Kostka JE.

Appl Environ Microbiol. 2011 Nov;77(22):8197-200. doi: 10.1128/AEM.05247-11. Epub 2011 Sep 23.

37.

A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer.

Gihring TM, Zhang G, Brandt CC, Brooks SC, Campbell JH, Carroll S, Criddle CS, Green SJ, Jardine P, Kostka JE, Lowe K, Mehlhorn TL, Overholt W, Watson DB, Yang Z, Wu WM, Schadt CW.

Appl Environ Microbiol. 2011 Sep;77(17):5955-65. doi: 10.1128/AEM.00220-11. Epub 2011 Jul 15.

38.

Comment on "A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico".

Joye SB, Leifer I, MacDonald IR, Chanton JP, Meile CD, Teske AP, Kostka JE, Chistoserdova L, Coffin R, Hollander D, Kastner M, Montoya JP, Rehder G, Solomon E, Treude T, Villareal TA.

Science. 2011 May 27;332(6033):1033; author reply 1033. doi: 10.1126/science.1203307.

39.

Microbial community changes in response to ethanol or methanol amendments for U(VI) reduction.

Vishnivetskaya TA, Brandt CC, Madden AS, Drake MM, Kostka JE, Akob DM, Küsel K, Palumbo AV.

Appl Environ Microbiol. 2010 Sep;76(17):5728-35. doi: 10.1128/AEM.00308-10. Epub 2010 Jul 2.

40.

Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface.

Wu WM, Carley J, Green SJ, Luo J, Kelly SD, Van Nostrand J, Lowe K, Mehlhorn T, Carroll S, Boonchayanant B, Löfller FE, Watson D, Kemner KM, Zhou J, Kitanidis PK, Kostka JE, Jardine PM, Criddle CS.

Environ Sci Technol. 2010 Jul 1;44(13):5104-11. doi: 10.1021/es1000837.

PMID:
20527772
41.

Microbial links between sulfate reduction and metal retention in uranium- and heavy metal-contaminated soil.

Sitte J, Akob DM, Kaufmann C, Finster K, Banerjee D, Burkhardt EM, Kostka JE, Scheinost AC, Büchel G, Küsel K.

Appl Environ Microbiol. 2010 May;76(10):3143-52. doi: 10.1128/AEM.00051-10. Epub 2010 Apr 2.

42.

Denitrifying bacteria isolated from terrestrial subsurface sediments exposed to mixed-waste contamination.

Green SJ, Prakash O, Gihring TM, Akob DM, Jasrotia P, Jardine PM, Watson DB, Brown SD, Palumbo AV, Kostka JE.

Appl Environ Microbiol. 2010 May;76(10):3244-54. doi: 10.1128/AEM.03069-09. Epub 2010 Mar 19.

43.

Aerobic denitrification in permeable Wadden Sea sediments.

Gao H, Schreiber F, Collins G, Jensen MM, Svitlica O, Kostka JE, Lavik G, de Beer D, Zhou HY, Kuypers MM.

ISME J. 2010 Mar;4(3):417-26. doi: 10.1038/ismej.2009.127. Epub 2009 Dec 10. Erratum in: ISME J. 2011 Apr;5(4):776. Svitlica, Olivera [added].

PMID:
20010631
44.

Impact of biostimulated redox processes on metal dynamics in an iron-rich creek soil of a former uranium mining area.

Burkhardt EM, Akob DM, Bischoff S, Sitte J, Kostka JE, Banerjee D, Scheinost AC, Küsel K.

Environ Sci Technol. 2010 Jan 1;44(1):177-83. doi: 10.1021/es902038e.

PMID:
19938814
45.

Geobacter daltonii sp. nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination.

Prakash O, Gihring TM, Dalton DD, Chin KJ, Green SJ, Akob DM, Wanger G, Kostka JE.

Int J Syst Evol Microbiol. 2010 Mar;60(Pt 3):546-53. doi: 10.1099/ijs.0.010843-0. Epub 2009 Aug 4.

PMID:
19654355
46.

Identification of sulfate-reducing bacteria in methylmercury-contaminated mine tailings by analysis of SSU rRNA genes.

Winch S, Mills HJ, Kostka JE, Fortin D, Lean DR.

FEMS Microbiol Ecol. 2009 Apr;68(1):94-107. doi: 10.1111/j.1574-6941.2009.00658.x.

47.

Characterization of nitrifying, denitrifying, and overall bacterial communities in permeable marine sediments of the northeastern Gulf of Mexico.

Mills HJ, Hunter E, Humphrys M, Kerkhof L, McGuinness L, Huettel M, Kostka JE.

Appl Environ Microbiol. 2008 Jul;74(14):4440-53. doi: 10.1128/AEM.02692-07. Epub 2008 May 16.

48.

Functional diversity and electron donor dependence of microbial populations capable of U(VI) reduction in radionuclide-contaminated subsurface sediments.

Akob DM, Mills HJ, Gihring TM, Kerkhof L, Stucki JW, Anastácio AS, Chin KJ, Küsel K, Palumbo AV, Watson DB, Kostka JE.

Appl Environ Microbiol. 2008 May;74(10):3159-70. doi: 10.1128/AEM.02881-07. Epub 2008 Mar 31.

49.

pH gradient-induced heterogeneity of Fe(III)-reducing microorganisms in coal mining-associated lake sediments.

Blöthe M, Akob DM, Kostka JE, Göschel K, Drake HL, Küsel K.

Appl Environ Microbiol. 2008 Feb;74(4):1019-29. Epub 2007 Dec 14. Erratum in: Appl Environ Microbiol. 2008 Nov,74(22):7100.

50.

Metabolically active microbial communities in uranium-contaminated subsurface sediments.

Akob DM, Mills HJ, Kostka JE.

FEMS Microbiol Ecol. 2007 Jan;59(1):95-107.

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