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Black Queen Evolution and Trophic Interactions Determine Plasmid Survival after the Disruption of the Conjugation Network.

Cairns J, Koskinen K, Penttinen R, Patinen T, Hartikainen A, Jokela R, Ruusulehto L, Viitamäki S, Mattila S, Hiltunen T, Jalasvuori M.

mSystems. 2018 Oct 2;3(5). pii: e00104-18. doi: 10.1128/mSystems.00104-18. eCollection 2018 Sep-Oct.


Antitumor effect of oncolytic virus and paclitaxel encapsulated in extracellular vesicles for lung cancer treatment.

Garofalo M, Saari H, Somersalo P, Crescenti D, Kuryk L, Aksela L, Capasso C, Madetoja M, Koskinen K, Oksanen T, Mäkitie A, Jalasvuori M, Cerullo V, Ciana P, Yliperttula M.

J Control Release. 2018 Aug 10;283:223-234. doi: 10.1016/j.jconrel.2018.05.015. Epub 2018 Jun 1.


Probiotics drive gut microbiome triggering emotional brain signatures.

Bagga D, Reichert JL, Koschutnig K, Aigner CS, Holzer P, Koskinen K, Moissl-Eichinger C, Schöpf V.

Gut Microbes. 2018 Nov 2;9(6):486-496. doi: 10.1080/19490976.2018.1460015. Epub 2018 Jun 14.


Nonresonant Local Fields Enhance Second-Harmonic Generation from Metal Nanoislands with Dielectric Cover.

Chervinskii S, Koskinen K, Scherbak S, Kauranen M, Lipovskii A.

Phys Rev Lett. 2018 Mar 16;120(11):113902. doi: 10.1103/PhysRevLett.120.113902.


Extending the hosts of Tectiviridae into four additional genera of Gram-positive bacteria and more diverse Bacillus species.

Jalasvuori M, Koskinen K.

Virology. 2018 May;518:136-142. doi: 10.1016/j.virol.2018.02.014. Epub 2018 Mar 15.


The nasal microbiome mirrors and potentially shapes olfactory function.

Koskinen K, Reichert JL, Hoier S, Schachenreiter J, Duller S, Moissl-Eichinger C, Schöpf V.

Sci Rep. 2018 Jan 22;8(1):1296. doi: 10.1038/s41598-018-19438-3.


A Combined LC-MS Metabolomics- and 16S rRNA Sequencing Platform to Assess Interactions between Herbal Medicinal Products and Human Gut Bacteria in Vitro: a Pilot Study on Willow Bark Extract.

Pferschy-Wenzig EM, Koskinen K, Moissl-Eichinger C, Bauer R.

Front Pharmacol. 2017 Dec 13;8:893. doi: 10.3389/fphar.2017.00893. eCollection 2017.


Enhancement of bulk second-harmonic generation from silicon nitride films by material composition.

Koskinen K, Czaplicki R, Slablab A, Ning T, Hermans A, Kuyken B, Mittal V, Murugan GS, Niemi T, Baets R, Kauranen M.

Opt Lett. 2017 Dec 1;42(23):5030-5033. doi: 10.1364/OL.42.005030.


First Insights into the Diverse Human Archaeome: Specific Detection of Archaea in the Gastrointestinal Tract, Lung, and Nose and on Skin.

Koskinen K, Pausan MR, Perras AK, Beck M, Bang C, Mora M, Schilhabel A, Schmitz R, Moissl-Eichinger C.

MBio. 2017 Nov 14;8(6). pii: e00824-17. doi: 10.1128/mBio.00824-17.


Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission.

Koskinen K, Rettberg P, Pukall R, Auerbach A, Wink L, Barczyk S, Perras A, Mahnert A, Margheritis D, Kminek G, Moissl-Eichinger C.

Microbiome. 2017 Oct 25;5(1):143. doi: 10.1186/s40168-017-0358-3.


Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing.

Schwendner P, Mahnert A, Koskinen K, Moissl-Eichinger C, Barczyk S, Wirth R, Berg G, Rettberg P.

Microbiome. 2017 Oct 4;5(1):129. doi: 10.1186/s40168-017-0345-8.


The salivary microbiome as an indicator of carcinogenesis in patients with oropharyngeal squamous cell carcinoma: A pilot study.

Wolf A, Moissl-Eichinger C, Perras A, Koskinen K, Tomazic PV, Thurnher D.

Sci Rep. 2017 Jul 19;7(1):5867. doi: 10.1038/s41598-017-06361-2.


The influence of human exploration on the microbial community structure and ammonia oxidizing potential of the Su Bentu limestone cave in Sardinia, Italy.

Leuko S, Koskinen K, Sanna L, D'Angeli IM, De Waele J, Marcia P, Moissl-Eichinger C, Rettberg P.

PLoS One. 2017 Jul 12;12(7):e0180700. doi: 10.1371/journal.pone.0180700. eCollection 2017.


Human age and skin physiology shape diversity and abundance of Archaea on skin.

Moissl-Eichinger C, Probst AJ, Birarda G, Auerbach A, Koskinen K, Wolf P, Holman HN.

Sci Rep. 2017 Jun 22;7(1):4039. doi: 10.1038/s41598-017-04197-4.


On the determination of χ(2) in thin films: a comparison of one-beam second-harmonic generation measurement methodologies.

Hermans A, Kieninger C, Koskinen K, Wickberg A, Solano E, Dendooven J, Kauranen M, Clemmen S, Wegener M, Koos C, Baets R.

Sci Rep. 2017 Mar 20;7:44581. doi: 10.1038/srep44581.


Bulk second-harmonic generation from thermally evaporated indium selenide thin films.

Koskinen K, Slablab A, Divya S, Czaplicki R, Chervinskii S, Kailasnath M, Radhakrishnan P, Kauranen M.

Opt Lett. 2017 Mar 15;42(6):1076-1079. doi: 10.1364/OL.42.001076.


Microorganisms in Confined Habitats: Microbial Monitoring and Control of Intensive Care Units, Operating Rooms, Cleanrooms and the International Space Station.

Mora M, Mahnert A, Koskinen K, Pausan MR, Oberauner-Wappis L, Krause R, Perras AK, Gorkiewicz G, Berg G, Moissl-Eichinger C.

Front Microbiol. 2016 Oct 13;7:1573. eCollection 2016. Review.


Recognition of multipolar second-order nonlinearities in thin-film samples.

Koskinen K, Czaplicki R, Kaplas T, Kauranen M.

Opt Express. 2016 Mar 7;24(5):4972-4978. doi: 10.1364/OE.24.004972.


Skin microbiome in melanomas and melanocytic nevi.

Salava A, Aho V, Pereira P, Koskinen K, Paulin L, Auvinen P, Lauerma A.

Eur J Dermatol. 2016 Jan-Feb;26(1):49-55. doi: 10.1684/ejd.2015.2696.


Atomic layer deposited second-order nonlinear optical metamaterial for back-end integration with CMOS-compatible nanophotonic circuitry.

Clemmen S, Hermans A, Solano E, Dendooven J, Koskinen K, Kauranen M, Brainis E, Detavernier C, Baets R.

Opt Lett. 2015 Nov 15;40(22):5371-4. doi: 10.1364/OL.40.005371.


The microbiome of the human lower airways: a next generation sequencing perspective.

Aho VTE, Pereira PAB, Haahtela T, Pawankar R, Auvinen P, Koskinen K.

World Allergy Organ J. 2015 Jun 16;8(1):23. doi: 10.1186/s40413-015-0074-z. eCollection 2015.


Inconsistent Denoising and Clustering Algorithms for Amplicon Sequence Data.

Koskinen K, Auvinen P, Björkroth KJ, Hultman J.

J Comput Biol. 2015 Aug;22(8):743-51. doi: 10.1089/cmb.2014.0268. Epub 2014 Dec 19.


Gut microbiota are related to Parkinson's disease and clinical phenotype.

Scheperjans F, Aho V, Pereira PA, Koskinen K, Paulin L, Pekkonen E, Haapaniemi E, Kaakkola S, Eerola-Rautio J, Pohja M, Kinnunen E, Murros K, Auvinen P.

Mov Disord. 2015 Mar;30(3):350-8. doi: 10.1002/mds.26069. Epub 2014 Dec 5.


Maternity hospital practices and breast feeding self-efficacy in Finnish primiparous and multiparous women during the immediate postpartum period.

Koskinen KS, Aho AL, Hannula L, Kaunonen M.

Midwifery. 2014 Apr;30(4):464-70. doi: 10.1016/j.midw.2013.05.003. Epub 2013 Jun 13.


The effect of marination on lactic acid bacteria communities in raw broiler fillet strips.

Nieminen TT, Välitalo H, Säde E, Paloranta A, Koskinen K, Björkroth J.

Front Microbiol. 2012 Oct 18;3:376. doi: 10.3389/fmicb.2012.00376. eCollection 2012.


Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation.

Ritari J, Koskinen K, Hultman J, Kurola JM, Kymäläinen M, Romantschuk M, Paulin L, Auvinen P.

BMC Microbiol. 2012 Jun 22;12:121. doi: 10.1186/1471-2180-12-121.


Expansion of the ten steps to successful breastfeeding into neonatal intensive care: expert group recommendations for three guiding principles.

Nyqvist KH, Häggkvist AP, Hansen MN, Kylberg E, Frandsen AL, Maastrup R, Ezeonodo A, Hannula L, Koskinen K, Haiek LN.

J Hum Lact. 2012 Aug;28(3):289-96. doi: 10.1177/0890334412441862. Epub 2012 Jun 6.


Comparison of microbial communities in marinated and unmarinated broiler meat by metagenomics.

Nieminen TT, Koskinen K, Laine P, Hultman J, Säde E, Paulin L, Paloranta A, Johansson P, Björkroth J, Auvinen P.

Int J Food Microbiol. 2012 Jul 2;157(2):142-9. doi: 10.1016/j.ijfoodmicro.2012.04.016. Epub 2012 Apr 29.


Environmental biodiversity, human microbiota, and allergy are interrelated.

Hanski I, von Hertzen L, Fyhrquist N, Koskinen K, Torppa K, Laatikainen T, Karisola P, Auvinen P, Paulin L, Mäkelä MJ, Vartiainen E, Kosunen TU, Alenius H, Haahtela T.

Proc Natl Acad Sci U S A. 2012 May 22;109(21):8334-9. doi: 10.1073/pnas.1205624109. Epub 2012 May 7.


Dipole limit in second-harmonic generation from arrays of gold nanoparticles.

Czaplicki R, Zdanowicz M, Koskinen K, Laukkanen J, Kuittinen M, Kauranen M.

Opt Express. 2011 Dec 19;19(27):26866-71. doi: 10.1364/OE.19.026866.


Spatially differing bacterial communities in water columns of the northern Baltic Sea.

Koskinen K, Hultman J, Paulin L, Auvinen P, Kankaanpää H.

FEMS Microbiol Ecol. 2011 Jan;75(1):99-110. doi: 10.1111/j.1574-6941.2010.00987.x. Epub 2010 Nov 9.


Development and simultaneous application of multiple care protocols in critical care: a multicenter feasibility study.

Takala J, Dellinger RP, Koskinen K, St Andre A, Read M, Levy M, Jakob SM, Mello PV, Friolet R, Ruokonen E; CPIC Study Group.

Intensive Care Med. 2008 Aug;34(8):1401-10. doi: 10.1007/s00134-008-1084-x. Epub 2008 Apr 3.


Differential early ERPs to fearful versus neutral facial expressions: a response to the salience of the eyes?

Leppänen JM, Hietanen JK, Koskinen K.

Biol Psychol. 2008 May;78(2):150-8. doi: 10.1016/j.biopsycho.2008.02.002. Epub 2008 Feb 16.


IFN-beta protects from vascular leakage via up-regulation of CD73.

Kiss J, Yegutkin GG, Koskinen K, Savunen T, Jalkanen S, Salmi M.

Eur J Immunol. 2007 Dec;37(12):3334-8.


VAP-1-deficient mice display defects in mucosal immunity and antimicrobial responses: implications for antiadhesive applications.

Koskinen K, Nevalainen S, Karikoski M, Hänninen A, Jalkanen S, Salmi M.

J Immunol. 2007 Nov 1;179(9):6160-8.


The oxidase activity of vascular adhesion protein-1 (VAP-1) induces endothelial E- and P-selectins and leukocyte binding.

Jalkanen S, Karikoski M, Mercier N, Koskinen K, Henttinen T, Elima K, Salmivirta K, Salmi M.

Blood. 2007 Sep 15;110(6):1864-70. Epub 2007 Jun 4.


Removal by sorption and in situ biodegradation of oil spills limits damage to marine biota: a laboratory simulation.

Suni S, Koskinen K, Kauppi S, Hannula E, Ryynänen T, Aalto A, Jäänheimo J, Ikävalko J, Romantschuk M.

Ambio. 2007 Apr;36(2-3):173-9.


Absence of the endothelial oxidase AOC3 leads to abnormal leukocyte traffic in vivo.

Stolen CM, Marttila-Ichihara F, Koskinen K, Yegutkin GG, Turja R, Bono P, Skurnik M, Hänninen A, Jalkanen S, Salmi M.

Immunity. 2005 Jan;22(1):105-15.


Hip fractures in Finland--a comparison of patient characteristics and outcomes in six hospitals.

Heikkinen T, Willig R, Hänninen A, Koskinen K, Mannismäki P, Alavaikko A, von und zu Fraunberg M, Jalovaara P.

Scand J Surg. 2004;93(3):234-40.


CLEVER-1 mediates lymphocyte transmigration through vascular and lymphatic endothelium.

Salmi M, Koskinen K, Henttinen T, Elima K, Jalkanen S.

Blood. 2004 Dec 15;104(13):3849-57. Epub 2004 Aug 5.


A peptide inhibitor of vascular adhesion protein-1 (VAP-1) blocks leukocyte-endothelium interactions under shear stress.

Yegutkin GG, Salminen T, Koskinen K, Kurtis C, McPherson MJ, Jalkanen S, Salmi M.

Eur J Immunol. 2004 Aug;34(8):2276-85.


Ethics of esthetic dentistry.

Liebler M, Devigus A, Randall RC, Burke FJ, Pallesen U, Cerutti A, Putignano A, Cauchie D, Kanzler R, Koskinen KP, Skjerven H, Strand GV, Vermaas RW.

Quintessence Int. 2004 Jun;35(6):456-65.


Granulocyte transmigration through the endothelium is regulated by the oxidase activity of vascular adhesion protein-1 (VAP-1).

Koskinen K, Vainio PJ, Smith DJ, Pihlavisto M, Ylä-Herttuala S, Jalkanen S, Salmi M.

Blood. 2004 May 1;103(9):3388-95. Epub 2004 Jan 15.


Incidence of cancer among the participants of the Finnish Asbestos Screening Campaign.

Koskinen K, Pukkala E, Reijula K, Karjalainen A.

Scand J Work Environ Health. 2003 Feb;29(1):64-70.


Different measures of asbestos exposure in estimating risk of lung cancer and mesothelioma among construction workers.

Koskinen K, Pukkala E, Martikainen R, Reijula K, Karjalainen A.

J Occup Environ Med. 2002 Dec;44(12):1190-6.


Effects of fluid-flow velocity and water quality on planktonic and sessile microbial growth in water hydraulic system.

Soini SM, Koskinen KT, Vilenius MJ, Puhakka JA.

Water Res. 2002 Sep;36(15):3812-20.


Effects of high and fluctuating pressure on microbial abundance and activity in a water hydraulic system.

Soini SM, Koskinen KT, Vilenius MJ, Puhakka JA.

Appl Microbiol Biotechnol. 2002 Apr;58(5):669-74. Epub 2002 Feb 8.


A cell surface amine oxidase directly controls lymphocyte migration.

Salmi M, Yegutkin GG, Lehvonen R, Koskinen K, Salminen T, Jalkanen S.

Immunity. 2001 Mar;14(3):265-76.


Radiographic abnormalities among Finnish construction, shipyard and asbestos industry workers.

Koskinen K, Zitting A, Tossavainen A, Rinne JP, Roto P, Kivekäs J, Reijula K, Huuskonen MS.

Scand J Work Environ Health. 1998 Apr;24(2):109-17.


Glutathione S-transferase and N-acetyltransferase genotypes and asbestos-associated pulmonary disorders.

Hirvonen A, Saarikoski ST, Linnainmaa K, Koskinen K, Husgafvel-Pursiainen K, Mattson K, Vainio H.

J Natl Cancer Inst. 1996 Dec 18;88(24):1853-6.


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