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Items: 1 to 50 of 176

1.

QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana.

El-Soda M, Neris Moreira C, Goredema-Matongera N, Jamar D, Koornneef M, Aarts MGM.

BMC Plant Biol. 2019 Sep 18;19(1):410. doi: 10.1186/s12870-019-1996-3.

2.

Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication.

Müller NA, Zhang L, Koornneef M, Jiménez-Gómez JM.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7135-7140. doi: 10.1073/pnas.1801862115. Epub 2018 May 22.

3.

Genes for seed longevity in barley identified by genomic analysis on near isogenic lines.

Wozny D, Kramer K, Finkemeier I, Acosta IF, Koornneef M.

Plant Cell Environ. 2018 Aug;41(8):1895-1911. doi: 10.1111/pce.13330. Epub 2018 Jun 19.

PMID:
29744896
4.

Madeiran Arabidopsis thaliana reveals ancient long-range colonization and clarifies demography in Eurasia.

Fulgione A, Koornneef M, Roux F, Hermisson J, Hancock AM.

Mol Biol Evol. 2017 Dec 5. doi: 10.1093/molbev/msx300. [Epub ahead of print]

5.

Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley.

van Esse GW, Walla A, Finke A, Koornneef M, Pecinka A, von Korff M.

Plant Physiol. 2017 Aug;174(4):2397-2408. doi: 10.1104/pp.17.00108. Epub 2017 Jun 27.

6.

NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis.

Ariga H, Katori T, Tsuchimatsu T, Hirase T, Tajima Y, Parker JE, Alcázar R, Koornneef M, Hoekenga O, Lipka AE, Gore MA, Sakakibara H, Kojima M, Kobayashi Y, Iuchi S, Kobayashi M, Shinozaki K, Sakata Y, Hayashi T, Saijo Y, Taji T.

Nat Plants. 2017 May 26;3:17072. doi: 10.1038/nplants.2017.72.

PMID:
28548656
7.

Quantitative trait loci controlling leaf venation in Arabidopsis.

Rishmawi L, Bühler J, Jaegle B, Hülskamp M, Koornneef M.

Plant Cell Environ. 2017 Aug;40(8):1429-1441. doi: 10.1111/pce.12938. Epub 2017 Apr 27.

PMID:
28252189
8.

A multi-marker association method for genome-wide association studies without the need for population structure correction.

Klasen JR, Barbez E, Meier L, Meinshausen N, Bühlmann P, Koornneef M, Busch W, Schneeberger K.

Nat Commun. 2016 Nov 10;7:13299. doi: 10.1038/ncomms13299.

9.

Fine mapping of a major QTL for awn length in barley using a multiparent mapping population.

Liller CB, Walla A, Boer MP, Hedley P, Macaulay M, Effgen S, von Korff M, van Esse GW, Koornneef M.

Theor Appl Genet. 2017 Feb;130(2):269-281. doi: 10.1007/s00122-016-2807-y. Epub 2016 Oct 12.

10.

The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana.

Horton MW, Willems G, Sasaki E, Koornneef M, Nordborg M.

Plant Cell Environ. 2016 Nov;39(11):2570-2579. doi: 10.1111/pce.12812. Epub 2016 Sep 21.

PMID:
27487257
11.

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.

Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger TE, de Jong H, Schranz ME.

Plant J. 2016 Oct;88(2):159-178. doi: 10.1111/tpj.13262. Epub 2016 Sep 13.

12.

Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms.

Zapata L, Ding J, Willing EM, Hartwig B, Bezdan D, Jiao WB, Patel V, Velikkakam James G, Koornneef M, Ossowski S, Schneeberger K.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):E4052-60. doi: 10.1073/pnas.1607532113. Epub 2016 Jun 27.

13.

The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus.

He F, Arce AL, Schmitz G, Koornneef M, Novikova P, Beyer A, de Meaux J.

Mol Biol Evol. 2016 Aug;33(8):2088-101. doi: 10.1093/molbev/msw096. Epub 2016 May 11.

PMID:
27189540
14.

phenoVein-A Tool for Leaf Vein Segmentation and Analysis.

Bühler J, Rishmawi L, Pflugfelder D, Huber G, Scharr H, Hülskamp M, Koornneef M, Schurr U, Jahnke S.

Plant Physiol. 2015 Dec;169(4):2359-70. doi: 10.1104/pp.15.00974. Epub 2015 Oct 14.

15.

Mutations in Barley Row Type Genes Have Pleiotropic Effects on Shoot Branching.

Liller CB, Neuhaus R, von Korff M, Koornneef M, van Esse W.

PLoS One. 2015 Oct 14;10(10):e0140246. doi: 10.1371/journal.pone.0140246. eCollection 2015.

16.

Phenotype of Arabidopsis thaliana semi-dwarfs with deep roots and high growth rates under water-limiting conditions is independent of the GA5 loss-of-function alleles.

Barboza-Barquero L, Nagel KA, Jansen M, Klasen JR, Kastenholz B, Braun S, Bleise B, Brehm T, Koornneef M, Fiorani F.

Ann Bot. 2015 Sep;116(3):321-31. doi: 10.1093/aob/mcv099. Epub 2015 Jul 10.

17.

Interview with Maarten Koornneef.

Koornneef M.

Trends Plant Sci. 2015 Mar;20(3):135-6. doi: 10.1016/j.tplants.2015.01.002. Epub 2015 Jan 27. No abstract available.

PMID:
25636171
18.

Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility and its occurrence in nature.

Alcázar R, von Reth M, Bautor J, Chae E, Weigel D, Koornneef M, Parker JE.

PLoS Genet. 2014 Dec 11;10(12):e1004848. doi: 10.1371/journal.pgen.1004848. eCollection 2014 Dec.

19.
20.

Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought.

El-Soda M, Kruijer W, Malosetti M, Koornneef M, Aarts MG.

Plant Cell Environ. 2015 Mar;38(3):585-99. doi: 10.1111/pce.12418. Epub 2014 Sep 3.

21.

Conserved histidine of metal transporter AtNRAMP1 is crucial for optimal plant growth under manganese deficiency at chilling temperatures.

Ihnatowicz A, Siwinska J, Meharg AA, Carey M, Koornneef M, Reymond M.

New Phytol. 2014 Jun;202(4):1173-83. doi: 10.1111/nph.12737. Epub 2014 Feb 27.

22.

Genotype×environment interaction QTL mapping in plants: lessons from Arabidopsis.

El-Soda M, Malosetti M, Zwaan BJ, Koornneef M, Aarts MG.

Trends Plant Sci. 2014 Jun;19(6):390-8. doi: 10.1016/j.tplants.2014.01.001. Epub 2014 Jan 31. Review.

PMID:
24491827
23.

Genotype-environment interactions affecting preflowering physiological and morphological traits of Brassica rapa grown in two watering regimes.

El-Soda M, Boer MP, Bagheri H, Hanhart CJ, Koornneef M, Aarts MG.

J Exp Bot. 2014 Feb;65(2):697-708. doi: 10.1093/jxb/ert434.

24.

The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana.

Wijnker E, Velikkakam James G, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, de Jong DF, de Snoo CB, Zapata L, Huettel B, de Jong H, Ossowski S, Weigel D, Koornneef M, Keurentjes JJ, Schneeberger K.

Elife. 2013 Dec 17;2:e01426. doi: 10.7554/eLife.01426.

25.

Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley.

Barboza L, Effgen S, Alonso-Blanco C, Kooke R, Keurentjes JJ, Koornneef M, Alcázar R.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15818-23. doi: 10.1073/pnas.1314979110. Epub 2013 Sep 10.

26.

Co-variation between seed dormancy, growth rate and flowering time changes with latitude in Arabidopsis thaliana.

Debieu M, Tang C, Stich B, Sikosek T, Effgen S, Josephs E, Schmitt J, Nordborg M, Koornneef M, de Meaux J.

PLoS One. 2013 May 23;8(5):e61075. doi: 10.1371/journal.pone.0061075. Print 2013.

27.

Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis.

Huang X, Ding J, Effgen S, Turck F, Koornneef M.

New Phytol. 2013 Aug;199(3):843-57. doi: 10.1111/nph.12306. Epub 2013 May 14.

28.

Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana.

Fournier-Level A, Wilczek AM, Cooper MD, Roe JL, Anderson J, Eaton D, Moyers BT, Petipas RH, Schaeffer RN, Pieper B, Reymond M, Koornneef M, Welch SM, Remington DL, Schmitt J.

Mol Ecol. 2013 Jul;22(13):3552-66. doi: 10.1111/mec.12285. Epub 2013 Mar 18.

PMID:
23506537
29.

Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population.

Bagheri H, El-Soda M, van Oorschot I, Hanhart C, Bonnema G, Jansen-van den Bosch T, Mank R, Keurentjes JJ, Meng L, Wu J, Koornneef M, Aarts MG.

Front Plant Sci. 2012 Aug 16;3:183. doi: 10.3389/fpls.2012.00183. eCollection 2012.

30.

Epistatic natural allelic variation reveals a function of AGAMOUS-LIKE6 in axillary bud formation in Arabidopsis.

Huang X, Effgen S, Meyer RC, Theres K, Koornneef M.

Plant Cell. 2012 Jun;24(6):2364-79. doi: 10.1105/tpc.112.099168. Epub 2012 Jun 22.

31.

Signals of speciation within Arabidopsis thaliana in comparison with its relatives.

Alcázar R, Pecinka A, Aarts MG, Fransz PF, Koornneef M.

Curr Opin Plant Biol. 2012 Apr;15(2):205-11. doi: 10.1016/j.pbi.2012.01.002. Epub 2012 Jan 19. Review.

PMID:
22265228
32.

My favourite flowering image.

Koornneef M.

J Exp Bot. 2013 Dec;64(18):5801-3. doi: 10.1093/jxb/err413. Epub 2012 Jan 11.

PMID:
22238450
33.

Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation.

van Zanten M, Koini MA, Geyer R, Liu Y, Brambilla V, Bartels D, Koornneef M, Fransz P, Soppe WJ.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20219-24. doi: 10.1073/pnas.1117726108. Epub 2011 Nov 28.

34.

Identification and characterization of quantitative trait loci that control seed dormancy in Arabidopsis.

Bentsink L, Koornneef M.

Methods Mol Biol. 2011;773:165-84. doi: 10.1007/978-1-61779-231-1_11.

PMID:
21898256
35.

DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana.

Chiang GC, Bartsch M, Barua D, Nakabayashi K, Debieu M, Kronholm I, Koornneef M, Soppe WJ, Donohue K, De Meaux J.

Mol Ecol. 2011 Aug;20(16):3336-49. doi: 10.1111/j.1365-294X.2011.05181.x. Epub 2011 Jul 8.

PMID:
21740475
36.

Variation in seed dormancy quantitative trait loci in Arabidopsis thaliana originating from one site.

Silady RA, Effgen S, Koornneef M, Reymond M.

PLoS One. 2011;6(6):e20886. doi: 10.1371/journal.pone.0020886. Epub 2011 Jun 30.

37.

Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population.

Huang X, Paulo MJ, Boer M, Effgen S, Keizer P, Koornneef M, van Eeuwijk FA.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4488-93. doi: 10.1073/pnas.1100465108. Epub 2011 Feb 23.

38.

Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions.

Alcázar R, García AV, Kronholm I, de Meaux J, Koornneef M, Parker JE, Reymond M.

Nat Genet. 2010 Dec;42(12):1135-9. doi: 10.1038/ng.704. Epub 2010 Oct 31.

PMID:
21037570
39.

The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis.

Sugliani M, Brambilla V, Clerkx EJ, Koornneef M, Soppe WJ.

Plant Cell. 2010 Jun;22(6):1936-46. doi: 10.1105/tpc.110.074674. Epub 2010 Jun 4.

40.

The development of Arabidopsis as a model plant.

Koornneef M, Meinke D.

Plant J. 2010 Mar;61(6):909-21. doi: 10.1111/j.1365-313X.2009.04086.x. Review.

41.

Relation among plant growth, carbohydrates and flowering time in the Arabidopsis Landsberg erecta x Kondara recombinant inbred line population.

El-Lithy ME, Reymond M, Stich B, Koornneef M, Vreugdenhil D.

Plant Cell Environ. 2010 Aug 1;33(8):1369-82. doi: 10.1111/j.1365-3040.2010.02155.x. Epub 2010 Apr 1.

42.

The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy.

Huang X, Schmitt J, Dorn L, Griffith C, Effgen S, Takao S, Koornneef M, Donohue K.

Mol Ecol. 2010 Apr;19(7):1335-51. doi: 10.1111/j.1365-294X.2010.04557.x. Epub 2010 Feb 10.

PMID:
20149097
43.

Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways.

Bentsink L, Hanson J, Hanhart CJ, Blankestijn-de Vries H, Coltrane C, Keizer P, El-Lithy M, Alonso-Blanco C, de Andrés MT, Reymond M, van Eeuwijk F, Smeekens S, Koornneef M.

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4264-9. doi: 10.1073/pnas.1000410107. Epub 2010 Feb 9.

44.

Variations in constitutive and inducible UV-B tolerance; dissecting photosystem II protection in Arabidopsis thaliana accessions.

Jansen MA, Martret BL, Koornneef M.

Physiol Plant. 2010 Jan;138(1):22-34. doi: 10.1111/j.1399-3054.2009.01293.x. Epub 2009 Sep 14.

PMID:
19843242
45.

Natural modifiers of seed longevity in the Arabidopsis mutants abscisic acid insensitive3-5 (abi3-5) and leafy cotyledon1-3 (lec1-3).

Sugliani M, Rajjou L, Clerkx EJ, Koornneef M, Soppe WJ.

New Phytol. 2009 Dec;184(4):898-908. doi: 10.1111/j.1469-8137.2009.03023.x. Epub 2009 Sep 14.

46.

Genetic analysis identifies quantitative trait loci controlling rosette mineral concentrations in Arabidopsis thaliana under drought.

Ghandilyan A, Barboza L, Tisné S, Granier C, Reymond M, Koornneef M, Schat H, Aarts MG.

New Phytol. 2009;184(1):180-92. doi: 10.1111/j.1469-8137.2009.02953.x. Epub 2009 Jul 27.

47.

What has natural variation taught us about plant development, physiology, and adaptation?

Alonso-Blanco C, Aarts MG, Bentsink L, Keurentjes JJ, Reymond M, Vreugdenhil D, Koornneef M.

Plant Cell. 2009 Jul;21(7):1877-96. doi: 10.1105/tpc.109.068114. Epub 2009 Jul 2. Review.

48.

A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations.

Ghandilyan A, Ilk N, Hanhart C, Mbengue M, Barboza L, Schat H, Koornneef M, El-Lithy M, Vreugdenhil D, Reymond M, Aarts MG.

J Exp Bot. 2009;60(5):1409-25. doi: 10.1093/jxb/erp084.

PMID:
19346258
49.

System-wide molecular evidence for phenotypic buffering in Arabidopsis.

Fu J, Keurentjes JJ, Bouwmeester H, America T, Verstappen FW, Ward JL, Beale MH, de Vos RC, Dijkstra M, Scheltema RA, Johannes F, Koornneef M, Vreugdenhil D, Breitling R, Jansen RC.

Nat Genet. 2009 Feb;41(2):166-7. doi: 10.1038/ng.308. Epub 2009 Jan 25.

PMID:
19169256
50.

Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana.

Keurentjes JJ, Sulpice R, Gibon Y, Steinhauser MC, Fu J, Koornneef M, Stitt M, Vreugdenhil D.

Genome Biol. 2008;9(8):R129. doi: 10.1186/gb-2008-9-8-r129. Epub 2008 Aug 18.

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