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Items: 16

1.

SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse.

Koopmans F, van Nierop P, Andres-Alonso M, Byrnes A, Cijsouw T, Coba MP, Cornelisse LN, Farrell RJ, Goldschmidt HL, Howrigan DP, Hussain NK, Imig C, de Jong APH, Jung H, Kohansalnodehi M, Kramarz B, Lipstein N, Lovering RC, MacGillavry H, Mariano V, Mi H, Ninov M, Osumi-Sutherland D, Pielot R, Smalla KH, Tang H, Tashman K, Toonen RFG, Verpelli C, Reig-Viader R, Watanabe K, van Weering J, Achsel T, Ashrafi G, Asi N, Brown TC, De Camilli P, Feuermann M, Foulger RE, Gaudet P, Joglekar A, Kanellopoulos A, Malenka R, Nicoll RA, Pulido C, de Juan-Sanz J, Sheng M, Südhof TC, Tilgner HU, Bagni C, Bayés À, Biederer T, Brose N, Chua JJE, Dieterich DC, Gundelfinger ED, Hoogenraad C, Huganir RL, Jahn R, Kaeser PS, Kim E, Kreutz MR, McPherson PS, Neale BM, O'Connor V, Posthuma D, Ryan TA, Sala C, Feng G, Hyman SE, Thomas PD, Smit AB, Verhage M.

Neuron. 2019 May 22. pii: S0896-6273(19)30427-1. doi: 10.1016/j.neuron.2019.05.002. [Epub ahead of print]

PMID:
31171447
2.

Living on the streets: An integrative review about the care for homeless people.

Koopmans FF, Daher DV, Acioli S, Sabóia VM, Ribeiro CRB, Silva CSSLD.

Rev Bras Enferm. 2019 Jan-Feb;72(1):211-220. doi: 10.1590/0034-7167-2017-0653. Review. English, Portuguese.

3.

A Fast and Economical Sample Preparation Protocol for Interaction Proteomics Analysis.

Gonzalez-Lozano MA, Koopmans F, Paliukhovich I, Smit AB, Li KW.

Proteomics. 2019 May;19(9):e1900027. doi: 10.1002/pmic.201900027. Epub 2019 Apr 18.

PMID:
30864274
4.

Implementation of the Street Outreach Office in the perspective of health care.

Paula HC, Daher DV, Koopmans FF, Faria MGA, Brandão PS, Scoralick GBF.

Rev Bras Enferm. 2018;71(suppl 6):2843-2847. doi: 10.1590/0034-7167-2017-0616. English, Portuguese.

5.

Comparative Hippocampal Synaptic Proteomes of Rodents and Primates: Differences in Neuroplasticity-Related Proteins.

Koopmans F, Pandya NJ, Franke SK, Phillippens IHCMH, Paliukhovich I, Li KW, Smit AB.

Front Mol Neurosci. 2018 Oct 2;11:364. doi: 10.3389/fnmol.2018.00364. eCollection 2018.

6.

Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells.

Gupta I, Collier PG, Haase B, Mahfouz A, Joglekar A, Floyd T, Koopmans F, Barres B, Smit AB, Sloan SA, Luo W, Fedrigo O, Ross ME, Tilgner HU.

Nat Biotechnol. 2018 Oct 15. doi: 10.1038/nbt.4259. [Epub ahead of print]

PMID:
30320766
7.

MIR137 schizophrenia-associated locus controls synaptic function by regulating synaptogenesis, synapse maturation and synaptic transmission.

He E, Lozano MAG, Stringer S, Watanabe K, Sakamoto K, den Oudsten F, Koopmans F, Giamberardino SN, Hammerschlag A, Cornelisse LN, Li KW, van Weering J, Posthuma D, Smit AB, Sullivan PF, Verhage M.

Hum Mol Genet. 2018 Jun 1;27(11):1879-1891. doi: 10.1093/hmg/ddy089.

8.

Comparative Analyses of Data Independent Acquisition Mass Spectrometric Approaches: DIA, WiSIM-DIA, and Untargeted DIA.

Koopmans F, Ho JTC, Smit AB, Li KW.

Proteomics. 2018 Jan;18(1). doi: 10.1002/pmic.201700304.

9.

Correlation profiling of brain sub-cellular proteomes reveals co-assembly of synaptic proteins and subcellular distribution.

Pandya NJ, Koopmans F, Slotman JA, Paliukhovich I, Houtsmuller AB, Smit AB, Li KW.

Sci Rep. 2017 Sep 21;7(1):12107. doi: 10.1038/s41598-017-11690-3.

10.

Tomosyn associates with secretory vesicles in neurons through its N- and C-terminal domains.

Geerts CJ, Mancini R, Chen N, Koopmans FTW, Li KW, Smit AB, van Weering JRT, Verhage M, Groffen AJA.

PLoS One. 2017 Jul 26;12(7):e0180912. doi: 10.1371/journal.pone.0180912. eCollection 2017.

11.

Interaction proteomics of canonical Caspr2 (CNTNAP2) reveals the presence of two Caspr2 isoforms with overlapping interactomes.

Chen N, Koopmans F, Gordon A, Paliukhovich I, Klaassen RV, van der Schors RC, Peles E, Verhage M, Smit AB, Li KW.

Biochim Biophys Acta. 2015 Jul;1854(7):827-33. doi: 10.1016/j.bbapap.2015.02.008. Epub 2015 Feb 21.

PMID:
25707359
12.

Interaction proteomics reveals brain region-specific AMPA receptor complexes.

Chen N, Pandya NJ, Koopmans F, Castelo-Székelv V, van der Schors RC, Smit AB, Li KW.

J Proteome Res. 2014 Dec 5;13(12):5695-706. doi: 10.1021/pr500697b. Epub 2014 Nov 19.

PMID:
25337787
13.

Empirical Bayesian random censoring threshold model improves detection of differentially abundant proteins.

Koopmans F, Cornelisse LN, Heskes T, Dijkstra TM.

J Proteome Res. 2014 Sep 5;13(9):3871-80. doi: 10.1021/pr500171u. Epub 2014 Aug 22.

PMID:
25102230
14.

Identifying true protein complex constituents in interaction proteomics: the example of the DMXL2 protein complex.

Li KW, Chen N, Klemmer P, Koopmans F, Karupothula R, Smit AB.

Proteomics. 2012 Aug;12(15-16):2428-32. doi: 10.1002/pmic.201100675. Epub 2012 Jul 23.

PMID:
22707207
15.
16.

The anatomy of recurrent hernia.

van der SLIKKE, KOOPMANS FA.

Arch Chir Neerl. 1960;12:13-24. No abstract available.

PMID:
13831670

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