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Items: 17

1.

Publisher Correction: A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.

Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K.

Nat Methods. 2019 May;16(5):446. doi: 10.1038/s41592-019-0423-x.

PMID:
30992571
2.

A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters.

Witjes L, Kooke R, van der Hooft JJJ, de Vos RCH, Keurentjes JJB, Medema MH, Nijveen H.

BMC Res Notes. 2019 Apr 2;12(1):194. doi: 10.1186/s13104-019-4222-3.

3.

A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.

Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K.

Nat Methods. 2019 Apr;16(4):295-298. doi: 10.1038/s41592-019-0358-2. Epub 2019 Mar 28. Erratum in: Nat Methods. 2019 Apr 16;:.

PMID:
30923379
4.

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map.

Kooke R, Morgado L, Becker F, van Eekelen H, Hazarika R, Zheng Q, de Vos RCH, Johannes F, Keurentjes JJB.

Genome Res. 2019 Jan;29(1):96-106. doi: 10.1101/gr.232371.117. Epub 2018 Nov 30.

5.

Genome-Wide Association Mapping Reveals That Specific and Pleiotropic Regulatory Mechanisms Fine-Tune Central Metabolism and Growth in Arabidopsis.

Fusari CM, Kooke R, Lauxmann MA, Annunziata MG, Enke B, Hoehne M, Krohn N, Becker FFM, Schlereth A, Sulpice R, Stitt M, Keurentjes JJB.

Plant Cell. 2017 Oct;29(10):2349-2373. doi: 10.1105/tpc.17.00232. Epub 2017 Sep 27.

6.

Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions.

Wu S, Tohge T, Cuadros-Inostroza Á, Tong H, Tenenboim H, Kooke R, Méret M, Keurentjes JB, Nikoloski Z, Fernie AR, Willmitzer L, Brotman Y.

Mol Plant. 2018 Jan 8;11(1):118-134. doi: 10.1016/j.molp.2017.08.012. Epub 2017 Sep 1.

7.

Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana.

Wu S, Alseekh S, Cuadros-Inostroza Á, Fusari CM, Mutwil M, Kooke R, Keurentjes JB, Fernie AR, Willmitzer L, Brotman Y.

PLoS Genet. 2016 Oct 19;12(10):e1006363. doi: 10.1371/journal.pgen.1006363. eCollection 2016 Oct.

8.

Improved batch correction in untargeted MS-based metabolomics.

Wehrens R, Hageman JA, van Eeuwijk F, Kooke R, Flood PJ, Wijnker E, Keurentjes JJ, Lommen A, van Eekelen HD, Hall RD, Mumm R, de Vos RC.

Metabolomics. 2016;12:88. Epub 2016 Mar 18.

9.

Effects of Multi-Generational Stress Exposure and Offspring Environment on the Expression and Persistence of Transgenerational Effects in Arabidopsis thaliana.

Groot MP, Kooke R, Knoben N, Vergeer P, Keurentjes JJ, Ouborg NJ, Verhoeven KJ.

PLoS One. 2016 Mar 16;11(3):e0151566. doi: 10.1371/journal.pone.0151566. eCollection 2016.

10.

Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis.

Kooke R, Kruijer W, Bours R, Becker F, Kuhn A, van de Geest H, Buntjer J, Doeswijk T, Guerra J, Bouwmeester H, Vreugdenhil D, Keurentjes JJ.

Plant Physiol. 2016 Apr;170(4):2187-203. doi: 10.1104/pp.15.00997. Epub 2016 Feb 11.

11.

Epigenetic variation contributes to environmental adaptation of Arabidopsis thaliana.

Kooke R, Keurentjes JJ.

Plant Signal Behav. 2015;10(9):e1057368. doi: 10.1080/15592324.2015.1057368.

12.

Epigenetic basis of morphological variation and phenotypic plasticity in Arabidopsis thaliana.

Kooke R, Johannes F, Wardenaar R, Becker F, Etcheverry M, Colot V, Vreugdenhil D, Keurentjes JJ.

Plant Cell. 2015 Feb;27(2):337-48. doi: 10.1105/tpc.114.133025. Epub 2015 Feb 10.

13.

Marker-based estimation of heritability in immortal populations.

Kruijer W, Boer MP, Malosetti M, Flood PJ, Engel B, Kooke R, Keurentjes JJ, van Eeuwijk FA.

Genetics. 2015 Feb;199(2):379-98. doi: 10.1534/genetics.114.167916. Epub 2014 Dec 19. Erratum in: Genetics. 2015 May;200(1):385.

14.

Interactions between auxin, microtubules and XTHs mediate green shade- induced petiole elongation in arabidopsis.

Sasidharan R, Keuskamp DH, Kooke R, Voesenek LA, Pierik R.

PLoS One. 2014 Mar 4;9(3):e90587. doi: 10.1371/journal.pone.0090587. eCollection 2014.

15.

Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley.

Barboza L, Effgen S, Alonso-Blanco C, Kooke R, Keurentjes JJ, Koornneef M, Alcázar R.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15818-23. doi: 10.1073/pnas.1314979110. Epub 2013 Sep 10.

16.

Backcross populations and near isogenic lines.

Kooke R, Wijnker E, Keurentjes JJ.

Methods Mol Biol. 2012;871:3-16. doi: 10.1007/978-1-61779-785-9_1.

PMID:
22565829
17.

Multi-dimensional regulation of metabolic networks shaping plant development and performance.

Kooke R, Keurentjes JJ.

J Exp Bot. 2012 May;63(9):3353-65. doi: 10.1093/jxb/err373. Epub 2011 Dec 3. Review.

PMID:
22140247

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