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Items: 12

1.

A demonstration of unsupervised machine learning in species delimitation.

Derkarabetian S, Castillo S, Koo PK, Ovchinnikov S, Hedin M.

Mol Phylogenet Evol. 2019 Jul 16;139:106562. doi: 10.1016/j.ympev.2019.106562. [Epub ahead of print]

PMID:
31323334
2.

Applying Perturbation Expectation-Maximization to Protein Trajectories of Rho GTPases.

Koo PK, Mochrie SGJ.

Methods Mol Biol. 2018;1821:57-70. doi: 10.1007/978-1-4939-8612-5_5.

PMID:
30062405
3.

Systems-level approach to uncovering diffusive states and their transitions from single-particle trajectories.

Koo PK, Mochrie SG.

Phys Rev E. 2016 Nov;94(5-1):052412. Epub 2016 Nov 28.

PMID:
27967069
4.

Erratum: "Active drift stabilization in three dimensions via image cross-correlation" [Rev. Sci. Instrum. 84, 103705 (2013)].

Koo PK, Setru SU, Mochrie SG.

Rev Sci Instrum. 2016 Aug;87(8):089901. doi: 10.1063/1.4962035. No abstract available.

PMID:
27587185
5.

Improved Determination of Subnuclear Position Enabled by Three-Dimensional Membrane Reconstruction.

Zhao Y, Schreiner SM, Koo PK, Colombi P, King MC, Mochrie SG.

Biophys J. 2016 Jul 12;111(1):19-24. doi: 10.1016/j.bpj.2016.05.036.

6.

Extracting Diffusive States of Rho GTPase in Live Cells: Towards In Vivo Biochemistry.

Koo PK, Weitzman M, Sabanaygam CR, van Golen KL, Mochrie SG.

PLoS Comput Biol. 2015 Oct 29;11(10):e1004297. doi: 10.1371/journal.pcbi.1004297. eCollection 2015 Oct.

7.

The tethering of chromatin to the nuclear envelope supports nuclear mechanics.

Schreiner SM, Koo PK, Zhao Y, Mochrie SG, King MC.

Nat Commun. 2015 Jun 15;6:7159. doi: 10.1038/ncomms8159.

8.

Active drift stabilization in three dimensions via image cross-correlation.

Koo PK, Setru SU, Mochrie SG.

Rev Sci Instrum. 2013 Oct;84(10):103705. doi: 10.1063/1.4824197. Erratum in: Rev Sci Instrum. 2016 Aug;87(8):089901.

PMID:
24182117
9.

The C. elegans male exercises directional control during mating through cholinergic regulation of sex-shared command interneurons.

Sherlekar AL, Janssen A, Siehr MS, Koo PK, Caflisch L, Boggess M, Lints R.

PLoS One. 2013;8(4):e60597. doi: 10.1371/journal.pone.0060597. Epub 2013 Apr 5.

10.

Multiple doublesex-related genes specify critical cell fates in a C. elegans male neural circuit.

Siehr MS, Koo PK, Sherlekar AL, Bian X, Bunkers MR, Miller RM, Portman DS, Lints R.

PLoS One. 2011;6(11):e26811. doi: 10.1371/journal.pone.0026811. Epub 2011 Nov 1.

11.

The robustness of Caenorhabditis elegans male mating behavior depends on the distributed properties of ray sensory neurons and their output through core and male-specific targets.

Koo PK, Bian X, Sherlekar AL, Bunkers MR, Lints R.

J Neurosci. 2011 May 18;31(20):7497-510. doi: 10.1523/JNEUROSCI.6153-10.2011.

12.

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