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Isolation and Identification of Aryl Hydrocarbon Receptor Modulators in White Button Mushrooms (Agaricus bisporus).

Tian Y, Gui W, Smith PB, Koo I, Murray IA, Cantorna MT, Perdew GH, Patterson AD.

J Agric Food Chem. 2019 Aug 21;67(33):9286-9294. doi: 10.1021/acs.jafc.9b03212. Epub 2019 Aug 8.


Runx3 inhibits endothelial progenitor cell differentiation and function via suppression of HIF-1α activity.

Choo SY, Yoon SH, Lee DJ, Lee SH, Li K, Koo IH, Lee W, Bae SC, Lee YM.

Int J Oncol. 2019 Apr;54(4):1327-1336. doi: 10.3892/ijo.2019.4713. Epub 2019 Feb 11.


Joint Relay Selection and Power Allocation through a Genetic Algorithm for Secure Cooperative Cognitive Radio Networks.

Rahman MA, Lee Y, Koo I.

Sensors (Basel). 2018 Nov 14;18(11). pii: E3934. doi: 10.3390/s18113934.


Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity.

Cai J, Nichols RG, Koo I, Kalikow ZA, Zhang L, Tian Y, Zhang J, Smith PB, Patterson AD.

mSystems. 2018 Nov 6;3(6). pii: e00123-18. doi: 10.1128/mSystems.00123-18. eCollection 2018 Nov-Dec.


Berberine Directly Affects the Gut Microbiota to Promote Intestinal Farnesoid X Receptor Activation.

Tian Y, Cai J, Gui W, Nichols RG, Koo I, Zhang J, Anitha M, Patterson AD.

Drug Metab Dispos. 2019 Feb;47(2):86-93. doi: 10.1124/dmd.118.083691. Epub 2018 Nov 8.


Structural and Functional Analysis of the Gut Microbiome for Toxicologists.

Nichols RG, Cai J, Murray IA, Koo I, Smith PB, Perdew GH, Patterson AD.

Curr Protoc Toxicol. 2018 Nov;78(1):e54. doi: 10.1002/cptx.54. Epub 2018 Sep 19.


Energy-Efficient Power Allocation and Relay Selection Schemes for Relay-Assisted D2D Communications in 5G Wireless Networks.

Rahman MA, Lee Y, Koo I.

Sensors (Basel). 2018 Aug 30;18(9). pii: E2865. doi: 10.3390/s18092865.


Weight management during pregnancy: a qualitative thematic analysis on knowledge, perceptions and experiences of overweight and obese women in Singapore.

Loh AZH, Oen KQX, Koo IJY, Ng YW, Yap JCH.

Glob Health Action. 2018;11(1):1499199. doi: 10.1080/16549716.2018.1499199.


Depletion-of-Battery Attack: Specificity, Modelling and Analysis.

Shakhov V, Koo I.

Sensors (Basel). 2018 Jun 6;18(6). pii: E1849. doi: 10.3390/s18061849.


Evaluation of Animal Models by Comparison with Human Late-Onset Alzheimer's Disease.

Kim BY, Lim HS, Kim Y, Kim YJ, Koo I, Jeong SJ.

Mol Neurobiol. 2018 Dec;55(12):9234-9250. doi: 10.1007/s12035-018-1036-6. Epub 2018 Apr 14.


Analysis of stable isotope assisted metabolomics data acquired by GC-MS.

Wei X, Shi B, Koo I, Yin X, Lorkiewicz P, Suhail H, Rattan R, Giri S, McClain CJ, Zhang X.

Anal Chim Acta. 2017 Aug 8;980:25-32. doi: 10.1016/j.aca.2017.05.002. Epub 2017 May 13.


Normal-Gamma-Bernoulli Peak Detection for Analysis of Comprehensive Two-Dimensional Gas Chromatography Mass Spectrometry Data.

Kim S, Jang H, Koo I, Lee J, Zhang X.

Comput Stat Data Anal. 2017 Jan;105:96-111. Epub 2016 Aug 3.


EIder: A compound identification tool for gas chromatography mass spectrometry data.

Koo I, Kim S, Shi B, Lorkiewicz P, Song M, McClain C, Zhang X.

J Chromatogr A. 2016 May 27;1448:107-114. doi: 10.1016/j.chroma.2016.04.064. Epub 2016 Apr 23.


Multichannel-Sensing Scheduling and Transmission-Energy Optimizing in Cognitive Radio Networks with Energy Harvesting.

Hoan TN, Hiep VV, Koo IS.

Sensors (Basel). 2016 Mar 31;16(4):461. doi: 10.3390/s16040461.


Throughput Maximization for Sensor-Aided Cognitive Radio Networks with Continuous Energy Arrivals.

Nguyen TT, Koo I.

Sensors (Basel). 2015 Nov 27;15(12):29782-801. doi: 10.3390/s151229766.


Effects of Dietary Different Doses of Copper and High Fructose Feeding on Rat Fecal Metabolome.

Wei X, Song M, Yin X, Schuschke DA, Koo I, McClain CJ, Zhang X.

J Proteome Res. 2015 Sep 4;14(9):4050-8. doi: 10.1021/acs.jproteome.5b00596. Epub 2015 Aug 7.


Recurrence-associated pathways in hepatitis B virus-positive hepatocellular carcinoma.

Kim BY, Choi DW, Woo SR, Park ER, Lee JG, Kim SH, Koo I, Park SH, Han CJ, Kim SB, Yeom YI, Yang SJ, Yu A, Lee JW, Jang JJ, Cho MH, Jeon WK, Park YN, Suh KS, Lee KH.

BMC Genomics. 2015 Apr 10;16:279. doi: 10.1186/s12864-015-1472-x.


Constructing Metabolic Association Networks Using High-dimensional Mass Spectrometry Data.

Koo I, Wei X, Shi X, Zhou Z, Kim S, Zhang X.

Chemometr Intell Lab Syst. 2014 Nov 15;138:193-202.


Hospitals' internal accountability.

Kraetschmer N, Jass J, Woodman C, Koo I, Kromm SK, Deber RB.

Healthc Policy. 2014 Sep;10(Spec issue):36-44.


Secure cooperative spectrum sensing for the cognitive radio network using nonuniform reliability.

Usman M, Koo I.

ScientificWorldJournal. 2014;2014:101809. doi: 10.1155/2014/101809. Epub 2014 Sep 11.


Comparative analysis of false discovery rate methods in constructing metabolic association networks.

Koo I, Yao S, Zhang X, Kim S.

J Bioinform Comput Biol. 2014 Aug;12(4):1450018. doi: 10.1142/S0219720014500188. Epub 2014 Aug 7.


Neighboring and connectivity-aware routing in VANETs.

Ghafoor H, Koo I, Gohar NU.

ScientificWorldJournal. 2014;2014:789247. doi: 10.1155/2014/789247. Epub 2014 May 21.


Goodness-of-fit based secure cooperative spectrum sensing for cognitive radio network.

Vu-Van H, Koo I.

ScientificWorldJournal. 2014;2014:752507. doi: 10.1155/2014/752507. Epub 2014 May 18.


Analysis of metabolomic profiling data acquired on GC-MS.

Koo I, Wei X, Zhang X.

Methods Enzymol. 2014;543:315-24. doi: 10.1016/B978-0-12-801329-8.00016-7.


Compound identification in GC-MS by simultaneously evaluating the mass spectrum and retention index.

Wei X, Koo I, Kim S, Zhang X.

Analyst. 2014 May 21;139(10):2507-14. doi: 10.1039/c3an02171h.


iMatch2: compound identification using retention index for analysis of gas chromatography-mass spectrometry data.

Koo I, Shi X, Kim S, Zhang X.

J Chromatogr A. 2014 Apr 11;1337:202-10. doi: 10.1016/j.chroma.2014.02.049. Epub 2014 Feb 24.


Optimal throughput for cognitive radio with energy harvesting in fading wireless channel.

Vu-Van H, Koo I.

ScientificWorldJournal. 2014 Jan 20;2014:370658. doi: 10.1155/2014/370658. eCollection 2014.


Metabolomic analysis of the effects of chronic arsenic exposure in a mouse model of diet-induced Fatty liver disease.

Shi X, Wei X, Koo I, Schmidt RH, Yin X, Kim SH, Vaughn A, McClain CJ, Arteel GE, Zhang X, Watson WH.

J Proteome Res. 2014 Feb 7;13(2):547-554. doi: 10.1021/pr400719u. Epub 2013 Dec 17.


Comparative analysis of mass spectral matching-based compound identification in gas chromatography-mass spectrometry.

Koo I, Kim S, Zhang X.

J Chromatogr A. 2013 Jul 12;1298:132-8. doi: 10.1016/j.chroma.2013.05.021. Epub 2013 May 13.


MetPP: a computational platform for comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry-based metabolomics.

Wei X, Shi X, Koo I, Kim S, Schmidt RH, Arteel GE, Watson WH, McClain C, Zhang X.

Bioinformatics. 2013 Jul 15;29(14):1786-92. doi: 10.1093/bioinformatics/btt275. Epub 2013 May 11.


A method of calculating the second dimension hold-up time for comprehensive two-dimensional gas chromatography.

Koo I, Zhao Y, Zhang J, Kim S, Zhang X.

J Chromatogr A. 2012 Oct 19;1260:193-9. doi: 10.1016/j.chroma.2012.08.068. Epub 2012 Aug 28.


Compound identification using partial and semipartial correlations for gas chromatography-mass spectrometry data.

Kim S, Koo I, Jeong J, Wu S, Shi X, Zhang X.

Anal Chem. 2012 Aug 7;84(15):6477-87. doi: 10.1021/ac301350n. Epub 2012 Jul 26.


A large scale test dataset to determine optimal retention index threshold based on three mass spectral similarity measures.

Zhang J, Koo I, Wang B, Gao QW, Zheng CH, Zhang X.

J Chromatogr A. 2012 Aug 17;1251:188-193. doi: 10.1016/j.chroma.2012.06.036. Epub 2012 Jun 19.


Comparison of pathways associated with hepatitis B- and C-infected hepatocellular carcinoma using pathway-based class discrimination method.

Lee SY, Song KH, Koo I, Lee KH, Suh KS, Kim BY.

Genomics. 2012 Jun;99(6):347-54. doi: 10.1016/j.ygeno.2012.04.004. Epub 2012 Apr 29.


A method of finding optimal weight factors for compound identification in gas chromatography-mass spectrometry.

Kim S, Koo I, Wei X, Zhang X.

Bioinformatics. 2012 Apr 15;28(8):1158-63. doi: 10.1093/bioinformatics/bts083. Epub 2012 Feb 13.


MetSign: a computational platform for high-resolution mass spectrometry-based metabolomics.

Wei X, Sun W, Shi X, Koo I, Wang B, Zhang J, Yin X, Tang Y, Bogdanov B, Kim S, Zhou Z, McClain C, Zhang X.

Anal Chem. 2011 Oct 15;83(20):7668-75. doi: 10.1021/ac2017025. Epub 2011 Sep 20.


In vitro screening on amyloid precursor protein modulation of plants used in Ayurvedic and traditional Chinese medicine for memory improvement.

Liu LF, Durairajan SS, Lu JH, Koo I, Li M.

J Ethnopharmacol. 2012 Jun 1;141(2):754-60. doi: 10.1016/j.jep.2011.08.065. Epub 2011 Sep 6.


Bacterial inactivation of wound infection in a human skin model by liquid-phase discharge plasma.

Kim PY, Kim YS, Koo IG, Jung JC, Kim GJ, Choi MY, Yu Z, Collins GJ.

PLoS One. 2011;6(8):e24104. doi: 10.1371/journal.pone.0024104. Epub 2011 Aug 29.


Upregulation of Poly (ADP-Ribose) Polymerase-1 (PARP1) in Triple-Negative Breast Cancer and Other Primary Human Tumor Types.

Ossovskaya V, Koo IC, Kaldjian EP, Alvares C, Sherman BM.

Genes Cancer. 2010 Aug;1(8):812-21. doi: 10.1177/1947601910383418.


Smith-Waterman peak alignment for comprehensive two-dimensional gas chromatography-mass spectrometry.

Kim S, Koo I, Fang A, Zhang X.

BMC Bioinformatics. 2011 Jun 15;12:235. doi: 10.1186/1471-2105-12-235.


Wavelet- and Fourier-transform-based spectrum similarity approaches to compound identification in gas chromatography/mass spectrometry.

Koo I, Zhang X, Kim S.

Anal Chem. 2011 Jul 15;83(14):5631-8. doi: 10.1021/ac200740w. Epub 2011 Jun 28.


Stimulation of non-amyloidogenic processing of amyloid-β protein precursor by cryptotanshinone involves activation and translocation of ADAM10 and PKC-α.

Durairajan SS, Liu LF, Lu JH, Koo I, Maruyama K, Chung SK, Huang JD, Li M.

J Alzheimers Dis. 2011;25(2):245-62. doi: 10.3233/JAD-2011-102085.


Iniparib plus chemotherapy in metastatic triple-negative breast cancer.

O'Shaughnessy J, Osborne C, Pippen JE, Yoffe M, Patt D, Rocha C, Koo IC, Sherman BM, Bradley C.

N Engl J Med. 2011 Jan 20;364(3):205-14. doi: 10.1056/NEJMoa1011418. Epub 2011 Jan 5.


The effects of Boehmeria nivea (L.) Gaud. on embryonic development: in vivo and in vitro studies.

Tian XY, Xu M, Deng B, Leung KS, Cheng KF, Zhao ZZ, Zhang SP, Yang ZJ, Deng PX, Xu DY, Xu XP, Koo I, Wong M.

J Ethnopharmacol. 2011 Mar 24;134(2):393-8. doi: 10.1016/j.jep.2010.12.034. Epub 2010 Dec 30.


The effect of salvianolic acid B combined with laminar shear stress on TNF-alpha-stimulated adhesion molecule expression in human aortic endothelial cells.

Xie LX, Durairajan SS, Lu JH, Liu CL, Kum WF, Wang Y, Koo I, Wu WK, Han D, Lao F, Huang JD, Li M.

Clin Hemorheol Microcirc. 2010;44(4):245-58. doi: 10.3233/CH-2010-1269.


Multivariate classification of urine metabolome profiles for breast cancer diagnosis.

Kim Y, Koo I, Jung BH, Chung BC, Lee D.

BMC Bioinformatics. 2010 Apr 16;11 Suppl 2:S4. doi: 10.1186/1471-2105-11-S2-S4.


Genetic Effects of FTO and MC4R Polymorphisms on Body Mass in Constitutional Types.

Cha S, Koo I, Park BL, Jeong S, Choi SM, Kim KS, Shin HD, Kim JY.

Evid Based Complement Alternat Med. 2011;2011:106390. doi: 10.1093/ecam/nep162. Epub 2011 Feb 13.


Association analyses of the INSIG2 polymorphism in the obesity and cholesterol levels of Korean populations.

Cha S, Koo I, Choi SM, Park BL, Kim KS, Kim JR, Shin HD, Kim JY.

BMC Med Genet. 2009 Sep 22;10:96. doi: 10.1186/1471-2350-10-96.

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