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Items: 44

1.

Encoding actions and verbs: Tracking the time-course of relational encoding during message and sentence formulation.

Konopka AE.

J Exp Psychol Learn Mem Cogn. 2019 Aug;45(8):1486-1510. doi: 10.1037/xlm0000650. Epub 2018 Sep 27.

PMID:
30265052
2.

Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Mar 7;9(1):1034. doi: 10.1038/s41467-018-03572-7.

3.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Feb 8;9(1):585. doi: 10.1038/s41467-018-02922-9. Erratum in: Nat Commun. 2018 Mar 7;9(1):1034.

4.

Planning to speak in L1 and L2.

Konopka AE, Meyer A, Forest TA.

Cogn Psychol. 2018 May;102:72-104. doi: 10.1016/j.cogpsych.2017.12.003. Epub 2018 Mar 8.

PMID:
29407637
5.

Assessing priming for prosodic representations: Speaking rate, intonational phrase boundaries, and pitch accenting.

Tooley KM, Konopka AE, Watson DG.

Mem Cognit. 2018 May;46(4):625-641. doi: 10.3758/s13421-018-0789-5.

6.

Accessibility of Referent Information Influences Sentence Planning: An Eye-Tracking Study.

Ganushchak LY, Konopka AE, Chen Y.

Front Psychol. 2017 Feb 28;8:250. doi: 10.3389/fpsyg.2017.00250. eCollection 2017.

7.

Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth.

Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS.

MBio. 2016 Jul 26;7(4). pii: e00949-16. doi: 10.1128/mBio.00949-16.

8.

Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover.

Stegen JC, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Danczak RE, Fansler SJ, Kennedy DW, Resch CT, Tfaily M.

Nat Commun. 2016 Apr 7;7:11237. doi: 10.1038/ncomms11237.

9.

Estimating and mapping ecological processes influencing microbial community assembly.

Stegen JC, Lin X, Fredrickson JK, Konopka AE.

Front Microbiol. 2015 May 1;6:370. doi: 10.3389/fmicb.2015.00370. eCollection 2015.

10.

Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum.

Rodionova IA, Li X, Plymale AE, Motamedchaboki K, Konopka AE, Romine MF, Fredrickson JK, Osterman AL, Rodionov DA.

Environ Microbiol Rep. 2015 Apr;7(2):204-10. doi: 10.1111/1758-2229.12227. Epub 2014 Dec 17.

PMID:
25345570
11.

What the eyes say about planning of focused referents during sentence formulation: a cross-linguistic investigation.

Ganushchak LY, Konopka AE, Chen Y.

Front Psychol. 2014 Oct 2;5:1124. doi: 10.3389/fpsyg.2014.01124. eCollection 2014.

12.

Integrated 'omics analysis for studying the microbial community response to a pH perturbation of a cellulose-degrading bioreactor culture.

Boaro AA, Kim YM, Konopka AE, Callister SJ, Ahring BK.

FEMS Microbiol Ecol. 2014 Dec;90(3):802-15. doi: 10.1111/1574-6941.12435. Epub 2014 Oct 31.

13.

Processes of incremental message planning during conversation.

Brown-Schmidt S, Konopka AE.

Psychon Bull Rev. 2015 Jun;22(3):833-43. doi: 10.3758/s13423-014-0714-2.

PMID:
25164954
14.

Characterization of protein redox dynamics induced during light-to-dark transitions and nutrient limitation in cyanobacteria.

Ansong C, Sadler NC, Hill EA, Lewis MP, Zink EM, Smith RD, Beliaev AS, Konopka AE, Wright AT.

Front Microbiol. 2014 Jul 3;5:325. doi: 10.3389/fmicb.2014.00325. eCollection 2014.

15.

Priming sentence planning.

Konopka AE, Meyer AS.

Cogn Psychol. 2014 Sep;73:1-40. doi: 10.1016/j.cogpsych.2014.04.001. Epub 2014 May 14.

PMID:
24838190
16.

Solvent immersion imprint lithography.

Vasdekis AE, Wilkins MJ, Grate JW, Kelly RT, Konopka AE, Xantheas SS, Chang TM.

Lab Chip. 2014 Jun 21;14(12):2072-80. doi: 10.1039/c4lc00226a. Epub 2014 May 2.

PMID:
24789571
17.

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer.

Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE.

Microbiology. 2014 Feb;160(2):362-372. doi: 10.1099/mic.0.073965-0.

PMID:
28206912
18.

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer.

Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE.

Microbiology. 2014 Feb;160(Pt 2):362-72. doi: 10.1099/mic.0.073965-0. Epub 2013 Dec 9.

PMID:
24324032
19.

Can intonational phrase structure be primed (like syntactic structure)?

Tooley KM, Konopka AE, Watson DG.

J Exp Psychol Learn Mem Cogn. 2014 Mar;40(2):348-63. doi: 10.1037/a0034900. Epub 2013 Nov 4.

20.

Computational evaluation of Synechococcus sp. PCC 7002 metabolism for chemical production.

Vu TT, Hill EA, Kucek LA, Konopka AE, Beliaev AS, Reed JL.

Biotechnol J. 2013 May;8(5):619-30. doi: 10.1002/biot.201200315. Epub 2013 Apr 24.

PMID:
23613453
21.

Persistence of uranium groundwater plumes: contrasting mechanisms at two DOE sites in the groundwater-river interaction zone.

Zachara JM, Long PE, Bargar J, Davis JA, Fox P, Fredrickson JK, Freshley MD, Konopka AE, Liu C, McKinley JP, Rockhold ML, Williams KH, Yabusaki SB.

J Contam Hydrol. 2013 Apr;147:45-72. doi: 10.1016/j.jconhyd.2013.02.001. Epub 2013 Feb 15.

PMID:
23500840
22.

Feedback-controlled LED photobioreactor for photophysiological studies of cyanobacteria.

Melnicki MR, Pinchuk GE, Hill EA, Kucek LA, Stolyar SM, Fredrickson JK, Konopka AE, Beliaev AS.

Bioresour Technol. 2013 Apr;134:127-33. doi: 10.1016/j.biortech.2013.01.079. Epub 2013 Feb 10.

PMID:
23500569
23.

Spatially resolved analysis of glycolipids and metabolites in living Synechococcus sp. PCC 7002 using nanospray desorption electrospray ionization.

Lanekoff I, Geydebrekht O, Pinchuk GE, Konopka AE, Laskin J.

Analyst. 2013 Apr 7;138(7):1971-8. doi: 10.1039/c3an36716a. Epub 2013 Feb 7.

PMID:
23392077
24.

Synthesis and application of an environmentally insensitive Cy3-based arsenical fluorescent probe to identify adaptive microbial responses involving proximal dithiol oxidation.

Fu N, Su D, Cort JR, Chen B, Xiong Y, Qian WJ, Konopka AE, Bigelow DJ, Squier TC.

J Am Chem Soc. 2013 Mar 6;135(9):3567-75. doi: 10.1021/ja3117284. Epub 2013 Feb 21.

PMID:
23379730
25.

Memory for non-native language: the role of lexical processing in the retention of surface form.

Sampaio C, Konopka AE.

Memory. 2013;21(4):537-44. doi: 10.1080/09658211.2012.746371. Epub 2012 Dec 14.

PMID:
23240966
26.

Dynamic modeling of aerobic growth of Shewanella oneidensis. Predicting triauxic growth, flux distributions, and energy requirement for growth.

Song HS, Ramkrishna D, Pinchuk GE, Beliaev AS, Konopka AE, Fredrickson JK.

Metab Eng. 2013 Jan;15:25-33. doi: 10.1016/j.ymben.2012.08.004. Epub 2012 Sep 26.

PMID:
23022551
27.

Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142.

Vu TT, Stolyar SM, Pinchuk GE, Hill EA, Kucek LA, Brown RN, Lipton MS, Osterman A, Fredrickson JK, Konopka AE, Beliaev AS, Reed JL.

PLoS Comput Biol. 2012;8(4):e1002460. doi: 10.1371/journal.pcbi.1002460. Epub 2012 Apr 5.

28.

Stochastic and deterministic assembly processes in subsurface microbial communities.

Stegen JC, Lin X, Konopka AE, Fredrickson JK.

ISME J. 2012 Sep;6(9):1653-64. doi: 10.1038/ismej.2012.22. Epub 2012 Mar 29.

29.

Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments.

Lee JH, Fredrickson JK, Kukkadapu RK, Boyanov MI, Kemner KM, Lin X, Kennedy DW, Bjornstad BN, Konopka AE, Moore DA, Resch CT, Phillips JL.

Environ Sci Technol. 2012 Apr 3;46(7):3721-30. doi: 10.1021/es204528m. Epub 2012 Mar 22.

PMID:
22414073
30.

Pyruvate and lactate metabolism by Shewanella oneidensis MR-1 under fermentation, oxygen limitation, and fumarate respiration conditions.

Pinchuk GE, Geydebrekht OV, Hill EA, Reed JL, Konopka AE, Beliaev AS, Fredrickson JK.

Appl Environ Microbiol. 2011 Dec;77(23):8234-40. doi: 10.1128/AEM.05382-11. Epub 2011 Sep 30.

31.

Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation.

Pinchuk GE, Hill EA, Geydebrekht OV, De Ingeniis J, Zhang X, Osterman A, Scott JH, Reed SB, Romine MF, Konopka AE, Beliaev AS, Fredrickson JK, Reed JL.

PLoS Comput Biol. 2010 Jun 24;6(6):e1000822. doi: 10.1371/journal.pcbi.1000822.

32.

High-level chromate resistance in Arthrobacter sp. strain FB24 requires previously uncharacterized accessory genes.

Henne KL, Nakatsu CH, Thompson DK, Konopka AE.

BMC Microbiol. 2009 Sep 16;9:199. doi: 10.1186/1471-2180-9-199.

33.

Global proteomic analysis of the chromate response in Arthrobacter sp. strain FB24.

Henne KL, Turse JE, Nicora CD, Lipton MS, Tollaksen SL, Lindberg C, Babnigg G, Giometti CS, Nakatsu CH, Thompson DK, Konopka AE.

J Proteome Res. 2009 Apr;8(4):1704-16. doi: 10.1021/pr800705f.

PMID:
19231868
34.

Schematic knowledge changes what judgments of learning predict in a source memory task.

Konopka AE, Benjamin AS.

Mem Cognit. 2009 Jan;37(1):42-51. doi: 10.3758/MC.37.1.42.

35.

Little houses and casas pequeñas: message formulation and syntactic form in unscripted speech with speakers of English and Spanish.

Brown-Schmidt S, Konopka AE.

Cognition. 2008 Nov;109(2):274-80. doi: 10.1016/j.cognition.2008.07.011. Epub 2008 Oct 7.

36.

Lexical or syntactic control of sentence formulation? Structural generalizations from idiom production.

Konopka AE, Bock K.

Cogn Psychol. 2009 Feb;58(1):68-101. doi: 10.1016/j.cogpsych.2008.05.002. Epub 2008 Jul 21.

PMID:
18644587
37.

Integrating cybernetic modeling with pathway analysis provides a dynamic, systems-level description of metabolic control.

Young JD, Henne KL, Morgan JA, Konopka AE, Ramkrishna D.

Biotechnol Bioeng. 2008 Jun 15;100(3):542-59. doi: 10.1002/bit.21780.

PMID:
18438875
38.

Association of microbial community composition and activity with lead, chromium, and hydrocarbon contamination.

Shi W, Becker J, Bischoff M, Turco RF, Konopka AE.

Appl Environ Microbiol. 2002 Aug;68(8):3859-66.

39.

Microbial growth on substitutable substrates: characterizing the consumer-resource relationship.

Ramakrishna R, Ramkrishna D, Konopka AE.

Biotechnol Bioeng. 1997 Apr 5;54(1):77-90.

PMID:
18634075
40.

Cybernetic modeling of growth in mixed, substitutable substrate environments: Preferential and simultaneous utilization.

Ramakrishna R, Ramkrishna D, Konopka AE.

Biotechnol Bioeng. 1996 Oct 5;52(1):141-51.

PMID:
18629860
41.

Functional inclusions in prokaryotic cells.

Shively JM, Bryant DA, Fuller RC, Konopka AE, Stevens SE Jr, Strohl WR.

Int Rev Cytol. 1988;113:35-100. Review. No abstract available.

PMID:
3068183
42.

Inhibition of gas vesicle production in Microcyclus aquaticus by L-lysine.

Konopka AE.

Can J Microbiol. 1977 Apr;23(4):363-8.

PMID:
861844
43.

Isolation and characterization of gas vesicles from Microcyclus aquaticus.

Konopka AE, Lara JC, Staley JT.

Arch Microbiol. 1977 Mar 1;112(2):133-40.

PMID:
403898
44.

Gas vesicle assembly in Microcyclus aquaticus.

Konopka AE, Staley JT, Lara JC.

J Bacteriol. 1975 Jun;122(3):1301-9.

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