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Items: 48

1.

Restricted immune activation and internalisation of anti-idiotype complexes between drug and antidrug antibodies.

van Schie KA, Kruithof S, Ooijevaar-de Heer P, Derksen NIL, van de Bovenkamp FS, Saris A, Vidarsson G, Bentlage AEH, Jiskoot W, Romeijn S, Koning RI, Bos E, Stork EM, Koeleman CAM, Wuhrer M, Wolbink G, Rispens T.

Ann Rheum Dis. 2018 Jun 26. pii: annrheumdis-2018-213299. doi: 10.1136/annrheumdis-2018-213299. [Epub ahead of print]

PMID:
29945923
2.

Advances in cryo-electron tomography for biology and medicine.

Koning RI, Koster AJ, Sharp TH.

Ann Anat. 2018 May;217:82-96. doi: 10.1016/j.aanat.2018.02.004. Epub 2018 Mar 8. Review.

3.

Structures of C1-IgG1 provide insights into how danger pattern recognition activates complement.

Ugurlar D, Howes SC, de Kreuk BJ, Koning RI, de Jong RN, Beurskens FJ, Schuurman J, Koster AJ, Sharp TH, Parren PWHI, Gros P.

Science. 2018 Feb 16;359(6377):794-797. doi: 10.1126/science.aao4988.

PMID:
29449492
4.

Correlative microscopy for structural microbiology.

Howes SC, Koning RI, Koster AJ.

Curr Opin Microbiol. 2018 Jun;43:132-138. doi: 10.1016/j.mib.2018.01.009. Epub 2018 Feb 4. Review.

5.

The antimicrobial peptide SAAP-148 combats drug-resistant bacteria and biofilms.

de Breij A, Riool M, Cordfunke RA, Malanovic N, de Boer L, Koning RI, Ravensbergen E, Franken M, van der Heijde T, Boekema BK, Kwakman PHS, Kamp N, El Ghalbzouri A, Lohner K, Zaat SAJ, Drijfhout JW, Nibbering PH.

Sci Transl Med. 2018 Jan 10;10(423). pii: eaan4044. doi: 10.1126/scitranslmed.aan4044. Erratum in: Sci Transl Med. 2018 Mar 21;10 (433):.

PMID:
29321257
6.

Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016).

Kryshtafovych A, Albrecht R, Baslé A, Bule P, Caputo AT, Carvalho AL, Chao KL, Diskin R, Fidelis K, Fontes CMGA, Fredslund F, Gilbert HJ, Goulding CW, Hartmann MD, Hayes CS, Herzberg O, Hill JC, Joachimiak A, Kohring GW, Koning RI, Lo Leggio L, Mangiagalli M, Michalska K, Moult J, Najmudin S, Nardini M, Nardone V, Ndeh D, Nguyen TH, Pintacuda G, Postel S, van Raaij MJ, Roversi P, Shimon A, Singh AK, Sundberg EJ, Tars K, Zitzmann N, Schwede T.

Proteins. 2018 Mar;86 Suppl 1:27-50. doi: 10.1002/prot.25392. Epub 2017 Oct 16.

PMID:
28960539
7.

Intradermal vaccination with hollow microneedles: A comparative study of various protein antigen and adjuvant encapsulated nanoparticles.

Du G, Hathout RM, Nasr M, Nejadnik MR, Tu J, Koning RI, Koster AJ, Slütter B, Kros A, Jiskoot W, Bouwstra JA, Mönkäre J.

J Control Release. 2017 Nov 28;266:109-118. doi: 10.1016/j.jconrel.2017.09.021. Epub 2017 Sep 21.

8.

Molecular mechanism of DRP1 assembly studied in vitro by cryo-electron microscopy.

Basu K, Lajoie D, Aumentado-Armstrong T, Chen J, Koning RI, Bossy B, Bostina M, Sik A, Bossy-Wetzel E, Rouiller I.

PLoS One. 2017 Jun 20;12(6):e0179397. doi: 10.1371/journal.pone.0179397. eCollection 2017.

9.

Structure of AP205 Coat Protein Reveals Circular Permutation in ssRNA Bacteriophages.

Shishovs M, Rumnieks J, Diebolder C, Jaudzems K, Andreas LB, Stanek J, Kazaks A, Kotelovica S, Akopjana I, Pintacuda G, Koning RI, Tars K.

J Mol Biol. 2016 Oct 23;428(21):4267-4279. doi: 10.1016/j.jmb.2016.08.025. Epub 2016 Aug 31.

PMID:
27591890
10.

Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ.

Koning RI, Gomez-Blanco J, Akopjana I, Vargas J, Kazaks A, Tars K, Carazo JM, Koster AJ.

Nat Commun. 2016 Aug 26;7:12524. doi: 10.1038/ncomms12524.

11.

Subcompartmentalization by cross-membranes during early growth of Streptomyces hyphae.

Yagüe P, Willemse J, Koning RI, Rioseras B, López-García MT, Gonzalez-Quiñonez N, Lopez-Iglesias C, Shliaha PV, Rogowska-Wrzesinska A, Koster AJ, Jensen ON, van Wezel GP, Manteca Á.

Nat Commun. 2016 Aug 12;7:12467. doi: 10.1038/ncomms12467.

12.

Multiple capsid-stabilizing interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis.

Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ.

Nat Commun. 2016 Jul 20;7:11387. doi: 10.1038/ncomms11387.

13.

Cross-membranes orchestrate compartmentalization and morphogenesis in Streptomyces.

Celler K, Koning RI, Willemse J, Koster AJ, van Wezel GP.

Nat Commun. 2016 Jun 13;7:ncomms11836. doi: 10.1038/ncomms11836.

14.

Correction: Detection of Alpha-Toxin and Other Virulence Factors in Biofilms of Staphylococcus aureus on Polystyrene and a Human Epidermal Model.

den Reijer PM, Haisma EM, Lemmens-den Toom NA, Willemse J, Koning RI, Demmers JA, Dekkers DH, Rijkers E, El Ghalbzouri A, Nibbering PH, van Wamel W.

PLoS One. 2016 Mar 24;11(3):e0152544. doi: 10.1371/journal.pone.0152544. eCollection 2016. No abstract available.

15.

Detection of Alpha-Toxin and Other Virulence Factors in Biofilms of Staphylococcus aureus on Polystyrene and a Human Epidermal Model.

den Reijer PM, Haisma EM, Lemmens-den Toom NA, Willemse J, Koning RI, Demmers JA, Dekkers DH, Rijkers E, El Ghalbzouri A, Nibbering PH, van Wamel W.

PLoS One. 2016 Jan 7;11(1):e0145722. doi: 10.1371/journal.pone.0145722. eCollection 2016. Erratum in: PLoS One. 2016;11(3):e0152544. Koning, R A [corrected to Koning, R I].

16.

Cryoelectron Tomography of the NAIP5/NLRC4 Inflammasome: Implications for NLR Activation.

Diebolder CA, Halff EF, Koster AJ, Huizinga EG, Koning RI.

Structure. 2015 Dec 1;23(12):2349-2357. doi: 10.1016/j.str.2015.10.001. Epub 2015 Nov 12.

17.

Imaging the lipid bilayer of giant unilamellar vesicles using red-to-blue light upconversion.

Askes SH, López Mora N, Harkes R, Koning RI, Koster B, Schmidt T, Kros A, Bonnet S.

Chem Commun (Camb). 2015 Jun 4;51(44):9137-40. doi: 10.1039/c5cc02197a.

PMID:
25940614
18.

Conical Fourier shell correlation applied to electron tomograms.

Diebolder CA, Faas FG, Koster AJ, Koning RI.

J Struct Biol. 2015 May;190(2):215-23. doi: 10.1016/j.jsb.2015.03.010. Epub 2015 Apr 3.

PMID:
25843950
19.

Correlative cryo-fluorescence light microscopy and cryo-electron tomography of Streptomyces.

Koning RI, Celler K, Willemse J, Bos E, van Wezel GP, Koster AJ.

Methods Cell Biol. 2014;124:217-39. doi: 10.1016/B978-0-12-801075-4.00010-0.

PMID:
25287843
20.

Complement is activated by IgG hexamers assembled at the cell surface.

Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJ, van de Winkel JG, Wilson IA, Koster AJ, Taylor RP, Saphire EO, Burton DR, Schuurman J, Gros P, Parren PW.

Science. 2014 Mar 14;343(6176):1260-3. doi: 10.1126/science.1248943.

21.

Cryo-electron microscopy of extracellular vesicles in fresh plasma.

Yuana Y, Koning RI, Kuil ME, Rensen PC, Koster AJ, Bertina RM, Osanto S.

J Extracell Vesicles. 2013 Dec 31;2. doi: 10.3402/jev.v2i0.21494. eCollection 2013 Dec 31.

22.

MAVIS: an integrated system for live microscopy and vitrification.

Koning RI, Faas FG, Boonekamp M, de Visser B, Janse J, Wiegant JC, de Breij A, Willemse J, Nibbering PH, Tanke HJ, Koster AJ.

Ultramicroscopy. 2014 Aug;143:67-76. doi: 10.1016/j.ultramic.2013.10.007. Epub 2013 Oct 18.

PMID:
24216128
23.

Nanofabrication of a gold fiducial array on specimen support for electron tomography.

Koning RI, Kutchoukov VG, Hagen CW, Koster AJ.

Ultramicroscopy. 2013 Dec;135:99-104. doi: 10.1016/j.ultramic.2013.06.015. Epub 2013 Jul 16.

PMID:
23954496
24.

Electron diffraction study of lipids in non-lesional stratum corneum of atopic eczema patients.

Janssens M, Mulder AA, van Smeden J, Pilgram GS, Wolterbeek R, Lavrijsen AP, Koning RI, Koster AJ, Bouwstra JA.

Biochim Biophys Acta. 2013 Aug;1828(8):1814-21. doi: 10.1016/j.bbamem.2013.04.001. Epub 2013 Apr 11.

25.

Enhanced, sialoadhesin-dependent uptake of Guillain-Barre syndrome-associated Campylobacter jejuni strains by human macrophages.

Heikema AP, Koning RI, Duarte dos Santos Rico S, Rempel H, Jacobs BC, Endtz HP, van Wamel WJ, Samsom JN.

Infect Immun. 2013 Jun;81(6):2095-103. doi: 10.1128/IAI.01437-12. Epub 2013 Mar 25.

26.

Cryo-electron tomography analysis of membrane vesicles from Acinetobacter baumannii ATCC19606 T.

Koning RI, de Breij A, Oostergetel GT, Nibbering PH, Koster AJ, Dijkshoorn L.

Res Microbiol. 2013 Jun;164(5):397-405. doi: 10.1016/j.resmic.2013.02.007. Epub 2013 Mar 19.

PMID:
23517882
27.

Multidimensional view of the bacterial cytoskeleton.

Celler K, Koning RI, Koster AJ, van Wezel GP.

J Bacteriol. 2013 Apr;195(8):1627-36. doi: 10.1128/JB.02194-12. Epub 2013 Feb 15. Review.

28.

Localization of fluorescently labeled structures in frozen-hydrated samples using integrated light electron microscopy.

Faas FG, Bárcena M, Agronskaia AV, Gerritsen HC, Moscicka KB, Diebolder CA, van Driel LF, Limpens RW, Bos E, Ravelli RB, Koning RI, Koster AJ.

J Struct Biol. 2013 Mar;181(3):283-90. doi: 10.1016/j.jsb.2012.12.004. Epub 2012 Dec 20.

PMID:
23261400
29.

Cellular nanoimaging by cryo electron tomography.

Koning RI, Koster AJ.

Methods Mol Biol. 2013;950:227-51. doi: 10.1007/978-1-62703-137-0_14.

PMID:
23086879
30.

Pushing the resolution limits in cryo electron tomography of biological structures.

Diebolder CA, Koster AJ, Koning RI.

J Microsc. 2012 Oct;248(1):1-5. doi: 10.1111/j.1365-2818.2012.03627.x. Epub 2012 Jun 7. Review.

31.

Single-walled carbon nanotubes as scaffolds to concentrate DNA for the study of DNA-protein interactions.

Liu Z, Galli F, Waterreus WJ, Meulenbroek E, Koning RI, Lamers GE, Olsthoorn RC, Pannu N, Oosterkamp TH, Koster AJ, Dame RT, Abrahams JP.

Chemphyschem. 2012 Apr 23;13(6):1569-75. doi: 10.1002/cphc.201100896. Epub 2012 Mar 7.

PMID:
22407519
32.

A role for seipin in lipid droplet dynamics and inheritance in yeast.

Wolinski H, Kolb D, Hermann S, Koning RI, Kohlwein SD.

J Cell Sci. 2011 Nov 15;124(Pt 22):3894-904. doi: 10.1242/jcs.091454. Epub 2011 Nov 18.

33.

Cryo-electron tomography of cellular microtubules.

Koning RI.

Methods Cell Biol. 2010;97:455-73. doi: 10.1016/S0091-679X(10)97024-6. Review.

PMID:
20719285
34.

Monitoring Alzheimer Amyloid Peptide Aggregation by EPR.

Sepkhanova I, Drescher M, Meeuwenoord NJ, Limpens RW, Koning RI, Filippov DV, Huber M.

Appl Magn Reson. 2009 Dec;36(2-4):209-222. Epub 2009 Oct 31.

35.

Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells.

van Driel LF, Valentijn JA, Valentijn KM, Koning RI, Koster AJ.

Eur J Cell Biol. 2009 Nov;88(11):669-84. doi: 10.1016/j.ejcb.2009.07.002. Epub 2009 Sep 2.

PMID:
19726102
36.

Shape and release control of a peptide decorated vesicle through pH sensitive orthogonal supramolecular interactions.

Versluis F, Tomatsu I, Kehr S, Fregonese C, Tepper AW, Stuart MC, Ravoo BJ, Koning RI, Kros A.

J Am Chem Soc. 2009 Sep 23;131(37):13186-7. doi: 10.1021/ja9026264.

PMID:
19711889
37.

Insights into complement convertase formation based on the structure of the factor B-cobra venom factor complex.

Janssen BJ, Gomes L, Koning RI, Svergun DI, Koster AJ, Fritzinger DC, Vogel CW, Gros P.

EMBO J. 2009 Aug 19;28(16):2469-78. doi: 10.1038/emboj.2009.184. Epub 2009 Jul 2.

38.

Cryo-electron tomography in biology and medicine.

Koning RI, Koster AJ.

Ann Anat. 2009 Nov;191(5):427-45. doi: 10.1016/j.aanat.2009.04.003. Epub 2009 Jun 9. Review.

PMID:
19559584
39.

Recycling of aborted ribosomal 50S subunit-nascent chain-tRNA complexes by the heat shock protein Hsp15.

Jiang L, Schaffitzel C, Bingel-Erlenmeyer R, Ban N, Korber P, Koning RI, de Geus DC, Plaisier JR, Abrahams JP.

J Mol Biol. 2009 Mar 13;386(5):1357-67. doi: 10.1016/j.jmb.2008.10.079. Epub 2008 Nov 5.

PMID:
19013177
40.

Cryo electron tomography of vitrified fibroblasts: microtubule plus ends in situ.

Koning RI, Zovko S, Bárcena M, Oostergetel GT, Koerten HK, Galjart N, Koster AJ, Mieke Mommaas A.

J Struct Biol. 2008 Mar;161(3):459-68. Epub 2007 Aug 29.

PMID:
17923421
41.

Schizosaccharomyces pombe Rad22A and Rad22B have similar biochemical properties and form multimeric structures.

de Vries FA, Zonneveld JB, de Groot AJ, Koning RI, van Zeeland AA, Pastink A.

Mutat Res. 2007 Feb 3;615(1-2):143-52. Epub 2006 Dec 16.

PMID:
17208257
42.

Structure of the E. coli signal recognition particle bound to a translating ribosome.

Schaffitzel C, Oswald M, Berger I, Ishikawa T, Abrahams JP, Koerten HK, Koning RI, Ban N.

Nature. 2006 Nov 23;444(7118):503-6. Epub 2006 Oct 29. Erratum in: Nature. 2007 Aug 30;448(7157):1076.

PMID:
17086205
43.

Cryo electron microscopy reconstructions of the Leviviridae unveil the densest icosahedral RNA packing possible.

van den Worm SH, Koning RI, Warmenhoven HJ, Koerten HK, van Duin J.

J Mol Biol. 2006 Nov 3;363(4):858-65. Epub 2006 Aug 24.

PMID:
16989861
44.

Mechanism of formation of multilayered 2D crystals of the enzyme IIC-mannitol transporter.

Stuart MC, Koning RI, Oostergetel GT, Brisson A.

Biochim Biophys Acta. 2004 May 27;1663(1-2):108-16.

45.

TYSON: robust searching, sorting, and selecting of single particles in electron micrographs.

Plaisier JR, Koning RI, Koerten HK, van Heel M, Abrahams JP.

J Struct Biol. 2004 Jan-Feb;145(1-2):76-83.

PMID:
15065675
46.

Preparation of flat carbon support films.

Koning RI, Oostergetel GT, Brisson A.

Ultramicroscopy. 2003 Apr;94(3-4):183-91.

PMID:
12524188
47.

The 5 A projection structure of the transmembrane domain of the mannitol transporter enzyme II.

Koning RI, Keegstra W, Oostergetel GT, Schuurman-Wolters G, Robillard GT, Brisson A.

J Mol Biol. 1999 Apr 16;287(5):845-51.

PMID:
10222194
48.

A 7.4-A projection structure of outer membrane phospholipase A from Escherichia coli by electron crystallography.

Boekema EJ, Stuart M, Koning RI, Keegstra W, Brisson A, Verheij HM, Dekker N.

J Struct Biol. 1998 Sep;123(1):67-71.

PMID:
9774546

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