Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 11

1.

FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using in Situ Hybridization Images in Drosophila.

Kumar S, Konikoff C, Sanderford M, Liu L, Newfeld S, Ye J, Kulathinal RJ.

G3 (Bethesda). 2017 Aug 7;7(8):2791-2797. doi: 10.1534/g3.117.040345.

2.

The Global Diversity of Hemichordata.

Tassia MG, Cannon JT, Konikoff CE, Shenkar N, Halanych KM, Swalla BJ.

PLoS One. 2016 Oct 4;11(10):e0162564. doi: 10.1371/journal.pone.0162564. eCollection 2016.

3.

myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in Drosophila embryos.

Montiel I, Konikoff C, Braun B, Packard M, Gramates SL, Sun Q, Ye J, Kumar S.

Bioinformatics. 2014 May 1;30(9):1319-21. doi: 10.1093/bioinformatics/btu007. Epub 2014 Jan 9.

4.

A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis.

Zhang W, Feng D, Li R, Chernikov A, Chrisochoides N, Osgood C, Konikoff C, Newfeld S, Kumar S, Ji S.

BMC Bioinformatics. 2013 Dec 28;14:372. doi: 10.1186/1471-2105-14-372.

5.

Hippo pathway phylogenetics predicts monoubiquitylation of Salvador and Merlin/Nf2.

Wisotzkey RG, Konikoff CE, Newfeld SJ.

PLoS One. 2012;7(12):e51599. doi: 10.1371/journal.pone.0051599. Epub 2012 Dec 14.

6.

Ptychoderid hemichordate neurulation without a notochord.

Luttrell S, Konikoff C, Byrne A, Bengtsson B, Swalla BJ.

Integr Comp Biol. 2012 Dec;52(6):829-34. doi: 10.1093/icb/ics117. Epub 2012 Sep 9.

PMID:
22966063
7.

FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis.

Kumar S, Konikoff C, Van Emden B, Busick C, Davis KT, Ji S, Wu LW, Ramos H, Brody T, Panchanathan S, Ye J, Karr TL, Gerold K, McCutchan M, Newfeld SJ.

Bioinformatics. 2011 Dec 1;27(23):3319-20. doi: 10.1093/bioinformatics/btr567. Epub 2011 Oct 12.

8.

Comparison of embryonic expression within multigene families using the FlyExpress discovery platform reveals more spatial than temporal divergence.

Konikoff CE, Karr TL, McCutchan M, Newfeld SJ, Kumar S.

Dev Dyn. 2012 Jan;241(1):150-60. doi: 10.1002/dvdy.22749. Epub 2011 Sep 29.

9.

Distinct molecular evolutionary mechanisms underlie the functional diversification of the Wnt and TGFbeta signaling pathways.

Konikoff CE, Wisotzkey RG, Stinchfield MJ, Newfeld SJ.

J Mol Evol. 2010 Apr;70(4):303-12. doi: 10.1007/s00239-010-9337-z. Epub 2010 Mar 26.

10.

Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster.

Marco A, Konikoff C, Karr TL, Kumar S.

Bioinformatics. 2009 Oct 1;25(19):2473-7. doi: 10.1093/bioinformatics/btp462. Epub 2009 Jul 24.

11.

Lysine conservation and context in TGFbeta and Wnt signaling suggest new targets and general themes for posttranslational modification.

Konikoff CE, Wisotzkey RG, Newfeld SJ.

J Mol Evol. 2008 Oct;67(4):323-33. doi: 10.1007/s00239-008-9159-4. Epub 2008 Sep 17.

Supplemental Content

Loading ...
Support Center