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Items: 24

1.

Giant viral genomic signatures in the previously reported gut metagenomes of pre-school children in rural India.

Chatterjee A, Kondabagil K.

Arch Virol. 2019 Nov;164(11):2819-2822. doi: 10.1007/s00705-019-04387-7. Epub 2019 Sep 3.

PMID:
31482204
2.

Mimivirus encodes a multifunctional primase with DNA/RNA polymerase, terminal transferase and translesion synthesis activities.

Gupta A, Lad SB, Ghodke PP, Pradeepkumar PI, Kondabagil K.

Nucleic Acids Res. 2019 Jul 26;47(13):6932-6945. doi: 10.1093/nar/gkz236.

3.
4.

Bacteriophage N4 large terminase: expression, purification and X-ray crystallographic analysis.

Wangchuk J, Prakash P, Bhaumik P, Kondabagil K.

Acta Crystallogr F Struct Biol Commun. 2018 Apr 1;74(Pt 4):198-204. doi: 10.1107/S2053230X18003084. Epub 2018 Mar 22.

PMID:
29633967
5.

The number of genes encoding repeat domain-containing proteins positively correlates with genome size in amoebal giant viruses.

Shukla A, Chatterjee A, Kondabagil K.

Virus Evol. 2018 Jan 3;4(1):vex039. doi: 10.1093/ve/vex039. eCollection 2018 Jan.

6.

The Polyphyletic Origins of Primase-Helicase Bifunctional Proteins.

Gupta A, Patil S, Vijayakumar R, Kondabagil K.

J Mol Evol. 2017 Dec;85(5-6):188-204. doi: 10.1007/s00239-017-9816-6. Epub 2017 Nov 15.

PMID:
29143083
7.

Complete genome sequence of Kurlavirus, a novel member of the family Marseilleviridae isolated in Mumbai, India.

Chatterjee A, Kondabagil K.

Arch Virol. 2017 Oct;162(10):3243-3245. doi: 10.1007/s00705-017-3469-z. Epub 2017 Jul 6.

PMID:
28685284
8.

Functional window of the avian compass.

Poonia VS, Kondabagil K, Saha D, Ganguly S.

Phys Rev E. 2017 May;95(5-1):052417. doi: 10.1103/PhysRevE.95.052417. Epub 2017 May 26.

PMID:
28618572
9.

Isolation and complete genome sequencing of Mimivirus bombay, a Giant Virus in sewage of Mumbai, India.

Chatterjee A, Ali F, Bange D, Kondabagil K.

Genom Data. 2016 May 31;9:1-3. doi: 10.1016/j.gdata.2016.05.013. eCollection 2016 Sep.

10.

Complete Genome Sequence of a New Megavirus Family Member Isolated from an Inland Water Lake for the First Time in India.

Chatterjee A, Ali F, Bange D, Kondabagil K.

Genome Announc. 2016 Jun 16;4(3). pii: e00402-16. doi: 10.1128/genomeA.00402-16.

11.

Extensive in silico analysis of Mimivirus coded Rab GTPase homolog suggests a possible role in virion membrane biogenesis.

Zade A, Sengupta M, Kondabagil K.

Front Microbiol. 2015 Sep 15;6:929. doi: 10.3389/fmicb.2015.00929. eCollection 2015.

12.

Designing a nine cysteine-less DNA packaging motor from bacteriophage T4 reveals new insights into ATPase structure and function.

Kondabagil K, Dai L, Vafabakhsh R, Ha T, Draper B, Rao VB.

Virology. 2014 Nov;468-470:660-668. doi: 10.1016/j.virol.2014.08.033. Epub 2014 Oct 16.

13.

Single-molecule packaging initiation in real time by a viral DNA packaging machine from bacteriophage T4.

Vafabakhsh R, Kondabagil K, Earnest T, Lee KS, Zhang Z, Dai L, Dahmen KA, Rao VB, Ha T.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15096-101. doi: 10.1073/pnas.1407235111. Epub 2014 Oct 6.

14.

Revisiting the genome packaging in viruses with lessons from the "Giants".

Chelikani V, Ranjan T, Kondabagil K.

Virology. 2014 Oct;466-467:15-26. doi: 10.1016/j.virol.2014.06.022. Epub 2014 Jul 3. Review.

15.

Genome segregation and packaging machinery in Acanthamoeba polyphaga mimivirus is reminiscent of bacterial apparatus.

Chelikani V, Ranjan T, Zade A, Shukla A, Kondabagil K.

J Virol. 2014 Jun;88(11):6069-75. doi: 10.1128/JVI.03199-13. Epub 2014 Mar 12.

16.

Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Sun S, Gao S, Kondabagil K, Xiang Y, Rossmann MG, Rao VB.

Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):817-22. doi: 10.1073/pnas.1110224109. Epub 2011 Dec 29.

17.

Adenine recognition is a key checkpoint in the energy release mechanism of phage T4 DNA packaging motor.

Kondabagil K, Draper B, Rao VB.

J Mol Biol. 2012 Jan 13;415(2):329-42. doi: 10.1016/j.jmb.2011.11.013. Epub 2011 Nov 12.

PMID:
22100308
18.

The small terminase, gp16, of bacteriophage T4 is a regulator of the DNA packaging motor.

Al-Zahrani AS, Kondabagil K, Gao S, Kelly N, Ghosh-Kumar M, Rao VB.

J Biol Chem. 2009 Sep 4;284(36):24490-500. doi: 10.1074/jbc.M109.025007. Epub 2009 Jun 26.

19.

The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces.

Sun S, Kondabagil K, Draper B, Alam TI, Bowman VD, Zhang Z, Hegde S, Fokine A, Rossmann MG, Rao VB.

Cell. 2008 Dec 26;135(7):1251-62. doi: 10.1016/j.cell.2008.11.015.

20.

The headful packaging nuclease of bacteriophage T4.

Alam TI, Draper B, Kondabagil K, Rentas FJ, Ghosh-Kumar M, Sun S, Rossmann MG, Rao VB.

Mol Microbiol. 2008 Sep;69(5):1180-90. doi: 10.1111/j.1365-2958.2008.06344.x. Epub 2008 Jul 4.

21.

The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids.

Sun S, Kondabagil K, Gentz PM, Rossmann MG, Rao VB.

Mol Cell. 2007 Mar 23;25(6):943-9.

22.

The DNA translocating ATPase of bacteriophage T4 packaging motor.

Kondabagil KR, Zhang Z, Rao VB.

J Mol Biol. 2006 Nov 3;363(4):786-99. Epub 2006 Aug 25.

PMID:
16987527
23.
24.

The functional domains of bacteriophage t4 terminase.

Kanamaru S, Kondabagil K, Rossmann MG, Rao VB.

J Biol Chem. 2004 Sep 24;279(39):40795-801. Epub 2004 Jul 19.

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