Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 20

1.

Statistical inference of protein structural alignments using information and compression.

Collier JH, Allison L, Lesk AM, Stuckey PJ, Garcia de la Banda M, Konagurthu AS.

Bioinformatics. 2017 Apr 1;33(7):1005-1013. doi: 10.1093/bioinformatics/btw757.

PMID:
28065899
2.

On Representing Protein Folding Patterns Using Non-Linear Parametric Curves.

Kasarapu P, de la Banda MG, Konagurthu AS.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Nov-Dec;11(6):1218-28. doi: 10.1109/TCBB.2014.2338319.

PMID:
26357057
3.

On sufficient statistics of least-squares superposition of vector sets.

Konagurthu AS, Kasarapu P, Allison L, Collier JH, Lesk AM.

J Comput Biol. 2015 Jun;22(6):487-97. doi: 10.1089/cmb.2014.0154. Epub 2015 Feb 19.

PMID:
25695500
4.

A new statistical framework to assess structural alignment quality using information compression.

Collier JH, Allison L, Lesk AM, Garcia de la Banda M, Konagurthu AS.

Bioinformatics. 2014 Sep 1;30(17):i512-8. doi: 10.1093/bioinformatics/btu460.

5.

How precise are reported protein coordinate data?

Konagurthu AS, Allison L, Abramson D, Stuckey PJ, Lesk AM.

Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):904-6. doi: 10.1107/S1399004713031787. Epub 2014 Feb 27.

PMID:
24598758
6.

Structure description and identification using the tableau representation of protein folding patterns.

Konagurthu AS, Lesk AM.

Methods Mol Biol. 2013;932:51-9. doi: 10.1007/978-1-62703-065-6_4.

PMID:
22987346
7.

Minimum message length inference of secondary structure from protein coordinate data.

Konagurthu AS, Lesk AM, Allison L.

Bioinformatics. 2012 Jun 15;28(12):i97-105. doi: 10.1093/bioinformatics/bts223.

8.

Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank.

Collier JH, Lesk AM, Garcia de la Banda M, Konagurthu AS.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W334-9. doi: 10.1093/nar/gks436. Epub 2012 May 25.

9.

Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs.

Mahmood K, Webb GI, Song J, Whisstock JC, Konagurthu AS.

Nucleic Acids Res. 2012 Mar;40(6):e44. doi: 10.1093/nar/gkr1261. Epub 2011 Dec 30.

10.

Piecewise linear approximation of protein structures using the principle of minimum message length.

Konagurthu AS, Allison L, Stuckey PJ, Lesk AM.

Bioinformatics. 2011 Jul 1;27(13):i43-51. doi: 10.1093/bioinformatics/btr240.

11.

EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.

Mahmood K, Konagurthu AS, Song J, Buckle AM, Webb GI, Whisstock JC.

Bioinformatics. 2010 Sep 1;26(17):2076-84. doi: 10.1093/bioinformatics/btq339. Epub 2010 Jun 27.

PMID:
20581400
12.

MUSTANG-MR structural sieving server: applications in protein structural analysis and crystallography.

Konagurthu AS, Reboul CF, Schmidberger JW, Irving JA, Lesk AM, Stuckey PJ, Whisstock JC, Buckle AM.

PLoS One. 2010 Apr 6;5(4):e10048. doi: 10.1371/journal.pone.0010048.

13.

A fast indexing approach for protein structure comparison.

Zhang L, Bailey J, Konagurthu AS, Ramamohanarao K.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S46. doi: 10.1186/1471-2105-11-S1-S46.

14.

Cataloging topologies of protein folding patterns.

Konagurthu AS, Lesk AM.

J Mol Recognit. 2010 Mar-Apr;23(2):253-7. doi: 10.1002/jmr.1006. Review.

PMID:
20151416
15.

On the origin of distribution patterns of motifs in biological networks.

Konagurthu AS, Lesk AM.

BMC Syst Biol. 2008 Aug 12;2:73. doi: 10.1186/1752-0509-2-73.

16.

Single and multiple input modules in regulatory networks.

Konagurthu AS, Lesk AM.

Proteins. 2008 Nov 1;73(2):320-4. doi: 10.1002/prot.22053.

PMID:
18433061
17.

Structural search and retrieval using a tableau representation of protein folding patterns.

Konagurthu AS, Stuckey PJ, Lesk AM.

Bioinformatics. 2008 Mar 1;24(5):645-51. doi: 10.1093/bioinformatics/btm641. Epub 2008 Jan 5.

PMID:
18175768
18.

MUSTANG: a multiple structural alignment algorithm.

Konagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM.

Proteins. 2006 Aug 15;64(3):559-74.

PMID:
16736488
19.

Optimal sum-of-pairs multiple sequence alignment using incremental Carrillo and Lipman bounds.

Konagurthu AS, Stuckey PJ.

J Comput Biol. 2006 Apr;13(3):668-85.

PMID:
16706718
20.

Progressive multiple alignment using sequence triplet optimizations and three-residue exchange costs.

Konagurthu AS, Whisstock J, Stuckey PJ.

J Bioinform Comput Biol. 2004 Dec;2(4):719-45.

PMID:
15617163

Supplemental Content

Loading ...
Support Center