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Items: 1 to 50 of 52

1.

Multiple Reinventions of Mating-type Switching during Budding Yeast Evolution.

Krassowski T, Kominek J, Shen XX, Opulente DA, Zhou X, Rokas A, Hittinger CT, Wolfe KH.

Curr Biol. 2019 Aug 5;29(15):2555-2562.e8. doi: 10.1016/j.cub.2019.06.056. Epub 2019 Jul 25.

2.

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts.

Steenwyk JL, Opulente DA, Kominek J, Shen XX, Zhou X, Labella AL, Bradley NP, Eichman BF, Čadež N, Libkind D, DeVirgilio J, Hulfachor AB, Kurtzman CP, Hittinger CT, Rokas A.

PLoS Biol. 2019 May 21;17(5):e3000255. doi: 10.1371/journal.pbio.3000255. eCollection 2019 May.

3.

Eukaryotic Acquisition of a Bacterial Operon.

Kominek J, Doering DT, Opulente DA, Shen XX, Zhou X, DeVirgilio J, Hulfachor AB, Groenewald M, Mcgee MA, Karlen SD, Kurtzman CP, Rokas A, Hittinger CT.

Cell. 2019 Mar 7;176(6):1356-1366.e10. doi: 10.1016/j.cell.2019.01.034. Epub 2019 Feb 21.

PMID:
30799038
4.

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.

Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, Takashima M, Manabe RI, Čadež N, Libkind D, Rosa CA, DeVirgilio J, Hulfachor AB, Groenewald M, Kurtzman CP, Hittinger CT, Rokas A.

Cell. 2018 Nov 29;175(6):1533-1545.e20. doi: 10.1016/j.cell.2018.10.023. Epub 2018 Nov 8.

5.

Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts.

Krause DJ, Kominek J, Opulente DA, Shen XX, Zhou X, Langdon QK, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT.

Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):11030-11035. doi: 10.1073/pnas.1806268115. Epub 2018 Oct 8.

6.

Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution.

Kuang MC, Kominek J, Alexander WG, Cheng JF, Wrobel RL, Hittinger CT.

Mol Biol Evol. 2018 Aug 1;35(8):1968-1981. doi: 10.1093/molbev/msy102.

7.

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH.

Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7.

8.

Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage.

Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen XX, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P.

Elife. 2018 Apr 12;7. pii: e33034. doi: 10.7554/eLife.33034.

9.

Spathaspora boniae sp. nov., a D-xylose-fermenting species in the Candida albicans/Lodderomyces clade.

Morais CG, Batista TM, Kominek J, Borelli BM, Furtado C, Moreira RG, Franco GR, Rosa LH, Fonseca C, Hittinger CT, Lachance MA, Rosa CA.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3798-3805. doi: 10.1099/ijsem.0.002186. Epub 2017 Sep 8.

PMID:
28884677
10.

Variable repeats in the eukaryotic polyubiquitin gene ubi4 modulate proteostasis and stress survival.

Gemayel R, Yang Y, Dzialo MC, Kominek J, Vowinckel J, Saels V, Van Huffel L, van der Zande E, Ralser M, Steensels J, Voordeckers K, Verstrepen KJ.

Nat Commun. 2017 Aug 30;8(1):397. doi: 10.1038/s41467-017-00533-4.

11.
12.

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data.

Shen XX, Zhou X, Kominek J, Kurtzman CP, Hittinger CT, Rokas A.

G3 (Bethesda). 2016 Dec 7;6(12):3927-3939. doi: 10.1534/g3.116.034744.

13.

In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies.

Zhou X, Peris D, Kominek J, Kurtzman CP, Hittinger CT, Rokas A.

G3 (Bethesda). 2016 Nov 8;6(11):3655-3662. doi: 10.1534/g3.116.034249.

14.

Genomic analysis and D-xylose fermentation of three novel Spathaspora species: Spathaspora girioi sp. nov., Spathaspora hagerdaliae f. a., sp. nov. and Spathaspora gorwiae f. a., sp. nov.

Lopes MR, Morais CG, Kominek J, Cadete RM, Soares MA, Uetanabaro AP, Fonseca C, Lachance MA, Hittinger CT, Rosa CA.

FEMS Yeast Res. 2016 Jun;16(4). pii: fow044. doi: 10.1093/femsyr/fow044. Epub 2016 May 1.

PMID:
27188884
15.

Genomics and the making of yeast biodiversity.

Hittinger CT, Rokas A, Bai FY, Boekhout T, Gonçalves P, Jeffries TW, Kominek J, Lachance MA, Libkind D, Rosa CA, Sampaio JP, Kurtzman CP.

Curr Opin Genet Dev. 2015 Dec;35:100-9. doi: 10.1016/j.gde.2015.10.008. Epub 2015 Nov 30. Review.

16.

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways.

Voordeckers K, Kominek J, Das A, Espinosa-Cantú A, De Maeyer D, Arslan A, Van Pee M, van der Zande E, Meert W, Yang Y, Zhu B, Marchal K, DeLuna A, Van Noort V, Jelier R, Verstrepen KJ.

PLoS Genet. 2015 Nov 6;11(11):e1005635. doi: 10.1371/journal.pgen.1005635. eCollection 2015 Nov.

17.

Overlapping binding sites of the frataxin homologue assembly factor and the heat shock protein 70 transfer factor on the Isu iron-sulfur cluster scaffold protein.

Manicki M, Majewska J, Ciesielski S, Schilke B, Blenska A, Kominek J, Marszalek J, Craig EA, Dutkiewicz R.

J Biol Chem. 2014 Oct 31;289(44):30268-78. doi: 10.1074/jbc.M114.596726. Epub 2014 Sep 16.

18.

The complex evolutionary dynamics of Hsp70s: a genomic and functional perspective.

Kominek J, Marszalek J, Neuvéglise C, Craig EA, Williams BL.

Genome Biol Evol. 2013;5(12):2460-77. doi: 10.1093/gbe/evt192.

19.

Binding of the chaperone Jac1 protein and cysteine desulfurase Nfs1 to the iron-sulfur cluster scaffold Isu protein is mutually exclusive.

Majewska J, Ciesielski SJ, Schilke B, Kominek J, Blenska A, Delewski W, Song JY, Marszalek J, Craig EA, Dutkiewicz R.

J Biol Chem. 2013 Oct 4;288(40):29134-42. doi: 10.1074/jbc.M113.503524. Epub 2013 Aug 14.

20.

Sequential duplications of an ancient member of the DnaJ-family expanded the functional chaperone network in the eukaryotic cytosol.

Sahi C, Kominek J, Ziegelhoffer T, Yu HY, Baranowski M, Marszalek J, Craig EA.

Mol Biol Evol. 2013 May;30(5):985-98. doi: 10.1093/molbev/mst008. Epub 2013 Jan 16.

21.

Climate change and violent conflict.

Scheffran J, Brzoska M, Kominek J, Link PM, Schilling J.

Science. 2012 May 18;336(6083):869-71. doi: 10.1126/science.1221339.

PMID:
22605765
22.

[Economic evaluation of targeted biologic therapy in metastatic renal cell carcinoma].

Ondrácková B, Demlová R, Komínek J.

Klin Onkol. 2010;23(6):439-45. Czech.

PMID:
21351422
23.

Co-evolution-driven switch of J-protein specificity towards an Hsp70 partner.

Pukszta S, Schilke B, Dutkiewicz R, Kominek J, Moczulska K, Stepien B, Reitenga KG, Bujnicki JM, Williams B, Craig EA, Marszalek J.

EMBO Rep. 2010 May;11(5):360-5. doi: 10.1038/embor.2010.29. Epub 2010 Mar 12.

24.

Industrial acids and other small molecules.

Roehr M, Kubicek CP, Kominek J.

Biotechnology. 1992;23:91-131. Review. No abstract available.

PMID:
1504609
25.

Contribution to the problems of periodontitis in children.

Handzel J, Kominek J, Rozkovcova E.

J Int Assoc Dent Child. 1987 Dec;18(2):3-16. No abstract available.

PMID:
3273297
26.

[The history of pediatric stomatology in Czechoslovakia].

Komínek J, Rozkovcová E.

Cesk Pediatr. 1986 May;41(5):296-7. Czech. No abstract available.

PMID:
2941170
27.

[A method for assessing dental age and its application in practice].

Komínek J, Rozkovcová E.

Cesk Pediatr. 1982 Jul;37(7):389-91. Czech. No abstract available.

PMID:
7127566
28.

[Pediatric stomatology and cooperation with the pediatrician].

Komínek J, Rozkovcová E.

Zdrav Aktual. 1981;196:178-87. Czech. No abstract available.

PMID:
6221488
29.

[Determination of dental age in the frontal selector of the jaw].

Komínek J, Rozkovcová E.

Cesk Stomatol. 1978 Dec;78(6):416-21. Czech. No abstract available.

PMID:
283895
30.

[Clinical experience with tooth transplantation in young persons II. Allotransplantation].

Komínek J, Rozkovcová E.

Cesk Stomatol. 1977 Dec;77(6):444-50. Czech. No abstract available.

PMID:
272959
31.

[Clinical experience with tooth transplantation in young age. I. Autologous transplantation of teeth].

Kominek J, Rozkovcová E.

Cesk Stomatol. 1977 Sep;77(5):323-8. Czech. No abstract available.

PMID:
271048
32.

Tooth allografts in children matched for HLA.

Iványi D, Komínek J.

Transplantation. 1977 Mar;23(3):255-60.

PMID:
854957
33.

[Examination of the oral cavity in pediatrics].

Komínek J, Rozkovcová E.

Cesk Pediatr. 1975 Dec;30(12):592-4. Czech. No abstract available.

PMID:
129301
34.

[30 years of pediatric dentistry in Czechoslovakia].

Komínek J, Rozkovcová E.

Cesk Pediatr. 1975 Aug;30(7-8):372-4. Czech. No abstract available.

PMID:
128419
35.

[Problems in the determination of tooth age].

Komínek J, Rozkovcová E, Vásková J.

Cesk Stomatol. 1974 Jul;74(4):267-71. Czech. No abstract available.

PMID:
4528996
36.

[Dental treatment of the sitting and lying child].

Komínek J, Rozkovcová E, Husniková P.

Cesk Stomatol. 1972 Nov;72(6):392-5. Czech. No abstract available.

PMID:
4264264
37.

[Growth and development in congenital adrenogenital syndrome].

Hostomská L, Brachfeldová J, Jozífko M, Komínek J, Lisá L, Nováková M, Sedlácková E, Spicáková V, Veselý K, Votava V.

Cesk Pediatr. 1972 Oct;27(10):479-83. Czech. No abstract available.

PMID:
5078508
38.

[Disorders in the continual development of permanent teeth].

Komínek J, Rozkovcová E.

Cesk Pediatr. 1972 Jul;27(7):337-8. Czech. No abstract available.

PMID:
5052073
39.

[Surgical methods for the preservation of impacted teeth].

Komínek J, Komínková O, Rozkovcová E.

Cesk Stomatol. 1971 May;71(3):148-51. Czech. No abstract available.

PMID:
5282747
40.

[Our experiences with surgical correction of impacted teeth].

Komínek J, Komínková O, Rozkovcová E.

SSO Schweiz Monatsschr Zahnheilkd. 1971 Apr;81(4):351-62. German. No abstract available.

PMID:
5280692
41.

[Unusual consequences of dental injuries in children].

Komínek J, Rozkovcová E, Vásková J.

Cesk Stomatol. 1971 Mar;71(2):70-4. Czech. No abstract available.

PMID:
4396274
42.

[Periodontal diseases in childhood. Epidemiological study].

Komínek J, Rozkovcová E.

Osterr Z Stomatol. 1970 Aug;67(8):281-6. German. No abstract available.

PMID:
5274054
43.

[Experience with stomatologic therapy in 27 hemophiliacs].

Komínek J, Rozkovcová E, Hrodek O.

Cesk Pediatr. 1970 May;25(5):239-41. Czech. No abstract available.

PMID:
5309806
44.

[Oculodentodigital dysplasia].

Karel I, Sedlácková E, Komínek J, Kolár J.

Cesk Oftalmol. 1969 Mar;25(2):88-97. Czech. No abstract available.

PMID:
4977829
45.

[The reaction of children to the environment of the dental office].

Kominek J, Rozkovcová E.

Cesk Stomatol. 1968 May;68(3):172-8. Czech. No abstract available.

PMID:
4231705
46.

Psychology of children's dental treatment.

Komínek J, Rozkovcová E.

Int Dent J. 1966 Mar;16(1):1-29. No abstract available.

PMID:
4222650
47.

[Turbine or classical drilling machine? A psychological study].

Kominek J, Rozkovcová E.

Dtsch Zahnarztl Z. 1965 Dec 1;20(12):1299-304. German. No abstract available.

PMID:
5322013
48.

[POSSIBILITIES OF PREVENTION IN STOMATOLOGY IN CHILDHOOD].

KOMINEK J, ROZKOVCOVA E.

Cesk Pediatr. 1964 Oct;19:931-5. Czech. No abstract available.

PMID:
14209422
49.

[Significance of dental abnormalities in pediatric diagnosis].

KOMINEK J, ROZKOVCOVA E.

Cesk Pediatr. 1962 Jun;17:505-13. Czech. No abstract available.

PMID:
14458111
50.

[Psychogenic effect of electric irritation of the dental pulp].

KOMINEK J, ROZKOVCOVA E.

Cesk Stomatol. 1955 Jul;(4-5):172-6. Czech. No abstract available.

PMID:
13277007

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