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Items: 11

1.

Influence of the spacer region between the Shine-Dalgarno box and the start codon for fine-tuning of the translation efficiency in Escherichia coli.

Komarova ES, Chervontseva ZS, Osterman IA, Evfratov SA, Rubtsova MP, Zatsepin TS, Semashko TA, Kostryukova ES, Bogdanov AA, Gelfand MS, Dontsova OA, Sergiev PV.

Microb Biotechnol. 2020 Mar 23. doi: 10.1111/1751-7915.13561. [Epub ahead of print]

2.

Erratum for Khabibullina et al., "Structure of Dirithromycin Bound to the Bacterial Ribosome Suggests New Ways for Rational Improvement of Macrolides".

Khabibullina NF, Tereshchenkov AG, Komarova ES, Syroegin EA, Shiriaev DI, Paleskava A, Kartsev VG, Bogdanov AA, Konevega AL, Dontsova OA, Sergiev PV, Osterman IA, Polikanov YS.

Antimicrob Agents Chemother. 2020 Jan 27;64(2). pii: e02360-19. doi: 10.1128/AAC.02360-19. Print 2020 Jan 27. No abstract available.

3.

Structure of Dirithromycin Bound to the Bacterial Ribosome Suggests New Ways for Rational Improvement of Macrolides.

Khabibullina NF, Tereshchenkov AG, Komarova ES, Syroegin EA, Shiriaev DI, Paleskava A, Kartsev VG, Bogdanov AA, Konevega AL, Dontsova OA, Sergiev PV, Osterman IA, Polikanov YS.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e02266-18. doi: 10.1128/AAC.02266-18. Print 2019 Jun. Erratum in: Antimicrob Agents Chemother. 2020 Jan 27;64(2):.

4.

Nybomycin-producing Streptomyces isolated from carpenter ant Camponotus vagus.

Zakalyukina YV, Birykov MV, Lukianov DA, Shiriaev DI, Komarova ES, Skvortsov DA, Kostyukevich Y, Tashlitsky VN, Polshakov VI, Nikolaev E, Sergiev PV, Osterman IA.

Biochimie. 2019 May;160:93-99. doi: 10.1016/j.biochi.2019.02.010. Epub 2019 Feb 21.

PMID:
30797881
5.

Biosynthesis of Translation Inhibitor Klebsazolicin Proceeds through Heterocyclization and N-Terminal Amidine Formation Catalyzed by a Single YcaO Enzyme.

Travin DY, Metelev M, Serebryakova M, Komarova ES, Osterman IA, Ghilarov D, Severinov K.

J Am Chem Soc. 2018 Apr 25;140(16):5625-5633. doi: 10.1021/jacs.8b02277. Epub 2018 Apr 11.

PMID:
29601195
6.

Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome.

Tereshchenkov AG, Dobosz-Bartoszek M, Osterman IA, Marks J, Sergeeva VA, Kasatsky P, Komarova ES, Stavrianidi AN, Rodin IA, Konevega AL, Sergiev PV, Sumbatyan NV, Mankin AS, Bogdanov AA, Polikanov YS.

J Mol Biol. 2018 Mar 16;430(6):842-852. doi: 10.1016/j.jmb.2018.01.016. Epub 2018 Feb 2.

7.

Cytotoxicity Test Based on Human Cells Labeled with Fluorescent Proteins: Fluorimetry, Photography, and Scanning for High-Throughput Assay.

Kalinina MA, Skvortsov DA, Rubtsova MP, Komarova ES, Dontsova OA.

Mol Imaging Biol. 2018 Jun;20(3):368-377. doi: 10.1007/s11307-017-1152-0.

PMID:
29270847
8.

Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel.

Metelev M, Osterman IA, Ghilarov D, Khabibullina NF, Yakimov A, Shabalin K, Utkina I, Travin DY, Komarova ES, Serebryakova M, Artamonova T, Khodorkovskii M, Konevega AL, Sergiev PV, Severinov K, Polikanov YS.

Nat Chem Biol. 2017 Oct;13(10):1129-1136. doi: 10.1038/nchembio.2462. Epub 2017 Aug 28.

9.

Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state.

Osterman IA, Khabibullina NF, Komarova ES, Kasatsky P, Kartsev VG, Bogdanov AA, Dontsova OA, Konevega AL, Sergiev PV, Polikanov YS.

Nucleic Acids Res. 2017 Jul 7;45(12):7507-7514. doi: 10.1093/nar/gkx413.

10.

Application of sorting and next generation sequencing to study 5΄-UTR influence on translation efficiency in Escherichia coli.

Evfratov SA, Osterman IA, Komarova ES, Pogorelskaya AM, Rubtsova MP, Zatsepin TS, Semashko TA, Kostryukova ES, Mironov AA, Burnaev E, Krymova E, Gelfand MS, Govorun VM, Bogdanov AA, Sergiev PV, Dontsova OA.

Nucleic Acids Res. 2017 Apr 7;45(6):3487-3502. doi: 10.1093/nar/gkw1141.

11.

Sorting Out Antibiotics' Mechanisms of Action: a Double Fluorescent Protein Reporter for High-Throughput Screening of Ribosome and DNA Biosynthesis Inhibitors.

Osterman IA, Komarova ES, Shiryaev DI, Korniltsev IA, Khven IM, Lukyanov DA, Tashlitsky VN, Serebryakova MV, Efremenkova OV, Ivanenkov YA, Bogdanov AA, Sergiev PV, Dontsova OA.

Antimicrob Agents Chemother. 2016 Nov 21;60(12):7481-7489. Print 2016 Dec.

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