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Items: 1 to 50 of 90

1.

Editorial Overview: Developmental neuroscience (2018).

Kolodkin AL, López-Bendito G.

Curr Opin Neurobiol. 2018 Dec;53:iii-vi. doi: 10.1016/j.conb.2018.10.010. No abstract available.

PMID:
30449415
2.

Genetic access to neurons in the accessory optic system reveals a role for Sema6A in midbrain circuitry mediating motion perception.

Lilley BN, Sabbah S, Hunyara JL, Gribble KD, Al-Khindi T, Xiong J, Wu Z, Berson DM, Kolodkin AL.

J Comp Neurol. 2019 Jan 1;527(1):282-296. doi: 10.1002/cne.24507. Epub 2018 Nov 11.

PMID:
30076594
3.

Neuropilin-2/PlexinA3 Receptors Associate with GluA1 and Mediate Sema3F-Dependent Homeostatic Scaling in Cortical Neurons.

Wang Q, Chiu SL, Koropouli E, Hong I, Mitchell S, Easwaran TP, Hamilton NR, Gustina AS, Zhu Q, Ginty DD, Huganir RL, Kolodkin AL.

Neuron. 2017 Dec 6;96(5):1084-1098.e7. doi: 10.1016/j.neuron.2017.10.029. Epub 2017 Nov 16.

4.

Varicose and cheerio collaborate with pebble to mediate semaphorin-1a reverse signaling in Drosophila.

Jeong S, Yang DS, Hong YG, Mitchell SP, Brown MP, Kolodkin AL.

Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):E8254-E8263. doi: 10.1073/pnas.1713010114. Epub 2017 Sep 11.

5.

The laminar organization of the Drosophila ellipsoid body is semaphorin-dependent and prevents the formation of ectopic synaptic connections.

Xie X, Tabuchi M, Brown MP, Mitchell SP, Wu MN, Kolodkin AL.

Elife. 2017 Jun 20;6. pii: e25328. doi: 10.7554/eLife.25328.

6.

Netrin-Mediated Axon Guidance to the CNS Midline Revisited.

Hand RA, Kolodkin AL.

Neuron. 2017 May 17;94(4):691-693. doi: 10.1016/j.neuron.2017.05.012.

7.

Establishing Wiring Specificity in Visual System Circuits: From the Retina to the Brain.

Zhang C, Kolodkin AL, Wong RO, James RE.

Annu Rev Neurosci. 2017 Jul 25;40:395-424. doi: 10.1146/annurev-neuro-072116-031607. Epub 2017 Apr 26. Review.

PMID:
28460185
8.

Wiring visual systems: common and divergent mechanisms and principles.

Kolodkin AL, Hiesinger PR.

Curr Opin Neurobiol. 2017 Feb;42:128-135. doi: 10.1016/j.conb.2016.12.006. Epub 2017 Jan 5. Review.

9.

Sculpting neural circuits by axon and dendrite pruning.

Riccomagno MM, Kolodkin AL.

Annu Rev Cell Dev Biol. 2015;31:779-805. doi: 10.1146/annurev-cellbio-100913-013038. Epub 2015 Oct 2. Review.

10.

Axon Dynamics during Neocortical Laminar Innervation.

Hand RA, Khalid S, Tam E, Kolodkin AL.

Cell Rep. 2015 Jul 14;12(2):172-82. doi: 10.1016/j.celrep.2015.06.026. Epub 2015 Jul 2.

11.

Functional assembly of accessory optic system circuitry critical for compensatory eye movements.

Sun LO, Brady CM, Cahill H, Al-Khindi T, Sakuta H, Dhande OS, Noda M, Huberman AD, Nathans J, Kolodkin AL.

Neuron. 2015 May 20;86(4):971-984. doi: 10.1016/j.neuron.2015.03.064. Epub 2015 May 7.

12.

Semaphorin 5A inhibits synaptogenesis in early postnatal- and adult-born hippocampal dentate granule cells.

Duan Y, Wang SH, Song J, Mironova Y, Ming GL, Kolodkin AL, Giger RJ.

Elife. 2014 Oct 14;3. doi: 10.7554/eLife.04390.

13.

Dlg5 regulates dendritic spine formation and synaptogenesis by controlling subcellular N-cadherin localization.

Wang SH, Celic I, Choi SY, Riccomagno M, Wang Q, Sun LO, Mitchell SP, Vasioukhin V, Huganir RL, Kolodkin AL.

J Neurosci. 2014 Sep 17;34(38):12745-61. doi: 10.1523/JNEUROSCI.1280-14.2014.

14.

Semaphorins and the dynamic regulation of synapse assembly, refinement, and function.

Koropouli E, Kolodkin AL.

Curr Opin Neurobiol. 2014 Aug;27:1-7. doi: 10.1016/j.conb.2014.02.005. Epub 2014 Mar 2. Review.

15.

Cas adaptor proteins organize the retinal ganglion cell layer downstream of integrin signaling.

Riccomagno MM, Sun LO, Brady CM, Alexandropoulos K, Seo S, Kurokawa M, Kolodkin AL.

Neuron. 2014 Feb 19;81(4):779-86. doi: 10.1016/j.neuron.2014.01.036.

16.

Function of the Drosophila receptor guanylyl cyclase Gyc76C in PlexA-mediated motor axon guidance.

Chak K, Kolodkin AL.

Development. 2014 Jan;141(1):136-47. doi: 10.1242/dev.095968. Epub 2013 Nov 27.

17.

On and off retinal circuit assembly by divergent molecular mechanisms.

Sun LO, Jiang Z, Rivlin-Etzion M, Hand R, Brady CM, Matsuoka RL, Yau KW, Feller MB, Kolodkin AL.

Science. 2013 Nov 1;342(6158):1241974. doi: 10.1126/science.1241974.

18.

MEGF8 is a modifier of BMP signaling in trigeminal sensory neurons.

Engelhard C, Sarsfield S, Merte J, Wang Q, Li P, Beppu H, Kolodkin AL, Sucov HM, Ginty DD.

Elife. 2013 Sep 17;2:e01160. doi: 10.7554/eLife.01160.

19.

Sema6B, Sema6C, and Sema6D expression and function during mammalian retinal development.

Matsuoka RL, Sun LO, Katayama K, Yoshida Y, Kolodkin AL.

PLoS One. 2013 Apr 30;8(4):e63207. doi: 10.1371/journal.pone.0063207. Print 2013.

20.

SnapShot: Axon guidance II.

Kolodkin AL, Pasterkamp RJ.

Cell. 2013 Apr 25;153(3):722.e1. doi: 10.1016/j.cell.2013.04.004. No abstract available.

21.

SnapShot: Axon Guidance.

Pasterkamp RJ, Kolodkin AL.

Cell. 2013 Apr 11;153(2):494, 494e1-2. doi: 10.1016/j.cell.2013.03.031. No abstract available.

22.

Cbl-associated protein regulates assembly and function of two tension-sensing structures in Drosophila.

Bharadwaj R, Roy M, Ohyama T, Sivan-Loukianova E, Delannoy M, Lloyd TE, Zlatic M, Eberl DF, Kolodkin AL.

Development. 2013 Feb 1;140(3):627-38. doi: 10.1242/dev.085100.

23.

The coordinate regulation of sensory afferent CNS targeting and CNS longitudinal tract organization in Drosophila during neural development.

Wu Z, Andreone BJ, Kolodkin AL.

J Peripher Nerv Syst. 2012 Dec;17 Suppl 3:34-7. doi: 10.1111/j.1529-8027.2012.00429.x. Review.

24.

The Control of semaphorin-1a-mediated reverse signaling by opposing pebble and RhoGAPp190 functions in drosophila.

Jeong S, Juhaszova K, Kolodkin AL.

Neuron. 2012 Nov 21;76(4):721-34. doi: 10.1016/j.neuron.2012.09.018.

25.

The extracellular matrix proteoglycan perlecan facilitates transmembrane semaphorin-mediated repulsive guidance.

Cho JY, Chak K, Andreone BJ, Wooley JR, Kolodkin AL.

Genes Dev. 2012 Oct 1;26(19):2222-35. doi: 10.1101/gad.193136.112.

26.

The RacGAP β2-Chimaerin selectively mediates axonal pruning in the hippocampus.

Riccomagno MM, Hurtado A, Wang H, Macopson JG, Griner EM, Betz A, Brose N, Kazanietz MG, Kolodkin AL.

Cell. 2012 Jun 22;149(7):1594-606. doi: 10.1016/j.cell.2012.05.018.

27.

Autism spectrum disorder susceptibility gene TAOK2 affects basal dendrite formation in the neocortex.

de Anda FC, Rosario AL, Durak O, Tran T, Gräff J, Meletis K, Rei D, Soda T, Madabhushi R, Ginty DD, Kolodkin AL, Tsai LH.

Nat Neurosci. 2012 Jun 10;15(7):1022-31. doi: 10.1038/nn.3141.

28.

Guidance-cue control of horizontal cell morphology, lamination, and synapse formation in the mammalian outer retina.

Matsuoka RL, Jiang Z, Samuels IS, Nguyen-Ba-Charvet KT, Sun LO, Peachey NS, Chédotal A, Yau KW, Kolodkin AL.

J Neurosci. 2012 May 16;32(20):6859-68. doi: 10.1523/JNEUROSCI.0267-12.2012.

29.

The p150(Glued) CAP-Gly domain regulates initiation of retrograde transport at synaptic termini.

Lloyd TE, Machamer J, O'Hara K, Kim JH, Collins SE, Wong MY, Sahin B, Imlach W, Yang Y, Levitan ES, McCabe BD, Kolodkin AL.

Neuron. 2012 Apr 26;74(2):344-60. doi: 10.1016/j.neuron.2012.02.026.

30.

Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting.

Sweeney LB, Chou YH, Wu Z, Joo W, Komiyama T, Potter CJ, Kolodkin AL, Garcia KC, Luo L.

Neuron. 2011 Dec 8;72(5):734-47. doi: 10.1016/j.neuron.2011.09.026.

31.

Class 5 transmembrane semaphorins control selective Mammalian retinal lamination and function.

Matsuoka RL, Chivatakarn O, Badea TC, Samuels IS, Cahill H, Katayama K, Kumar SR, Suto F, Chédotal A, Peachey NS, Nathans J, Yoshida Y, Giger RJ, Kolodkin AL.

Neuron. 2011 Aug 11;71(3):460-73. doi: 10.1016/j.neuron.2011.06.009.

32.

A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS.

Wu Z, Sweeney LB, Ayoob JC, Chak K, Andreone BJ, Ohyama T, Kerr R, Luo L, Zlatic M, Kolodkin AL.

Neuron. 2011 Apr 28;70(2):281-98. doi: 10.1016/j.neuron.2011.02.050.

33.

Transmembrane semaphorin signalling controls laminar stratification in the mammalian retina.

Matsuoka RL, Nguyen-Ba-Charvet KT, Parray A, Badea TC, Chédotal A, Kolodkin AL.

Nature. 2011 Feb 10;470(7333):259-63. doi: 10.1038/nature09675.

34.

Mechanisms and molecules of neuronal wiring: a primer.

Kolodkin AL, Tessier-Lavigne M.

Cold Spring Harb Perspect Biol. 2011 Jun 1;3(6). pii: a001727. doi: 10.1101/cshperspect.a001727. Review.

35.

A forward genetic screen in mice identifies Sema3A(K108N), which binds to neuropilin-1 but cannot signal.

Merte J, Wang Q, Vander Kooi CW, Sarsfield S, Leahy DJ, Kolodkin AL, Ginty DD.

J Neurosci. 2010 Apr 21;30(16):5767-75. doi: 10.1523/JNEUROSCI.5061-09.2010.

36.

Secreted semaphorins control spine distribution and morphogenesis in the postnatal CNS.

Tran TS, Rubio ME, Clem RL, Johnson D, Case L, Tessier-Lavigne M, Huganir RL, Ginty DD, Kolodkin AL.

Nature. 2009 Dec 24;462(7276):1065-9. doi: 10.1038/nature08628. Epub 2009 Dec 13.

37.

A genetic pathway composed of Sox14 and Mical governs severing of dendrites during pruning.

Kirilly D, Gu Y, Huang Y, Wu Z, Bashirullah A, Low BC, Kolodkin AL, Wang H, Yu F.

Nat Neurosci. 2009 Dec;12(12):1497-505. doi: 10.1038/nn.2415. Epub 2009 Nov 1.

38.

Semaphorin 3F is a bifunctional guidance cue for dopaminergic axons and controls their fasciculation, channeling, rostral growth, and intracortical targeting.

Kolk SM, Gunput RA, Tran TS, van den Heuvel DM, Prasad AA, Hellemons AJ, Adolfs Y, Ginty DD, Kolodkin AL, Burbach JP, Smidt MP, Pasterkamp RJ.

J Neurosci. 2009 Oct 7;29(40):12542-57. doi: 10.1523/JNEUROSCI.2521-09.2009.

39.
40.

Semaphorin regulation of cellular morphology.

Tran TS, Kolodkin AL, Bharadwaj R.

Annu Rev Cell Dev Biol. 2007;23:263-92. Review.

PMID:
17539753
41.

Crk-associated substrate (Cas) signaling protein functions with integrins to specify axon guidance during development.

Huang Z, Yazdani U, Thompson-Peer KL, Kolodkin AL, Terman JR.

Development. 2007 Jun;134(12):2337-47.

42.

Semaphorin 7A initiates T-cell-mediated inflammatory responses through alpha1beta1 integrin.

Suzuki K, Okuno T, Yamamoto M, Pasterkamp RJ, Takegahara N, Takamatsu H, Kitao T, Takagi J, Rennert PD, Kolodkin AL, Kumanogoh A, Kikutani H.

Nature. 2007 Apr 5;446(7136):680-4. Epub 2007 Mar 21.

PMID:
17377534
43.

Descrambling Dscam diversity.

Bharadwaj R, Kolodkin AL.

Cell. 2006 May 5;125(3):421-4. Review.

44.

Drosophila Plexin B is a Sema-2a receptor required for axon guidance.

Ayoob JC, Terman JR, Kolodkin AL.

Development. 2006 Jun;133(11):2125-35. Epub 2006 May 3.

45.

Distinct roles for secreted semaphorin signaling in spinal motor axon guidance.

Huber AB, Kania A, Tran TS, Gu C, De Marco Garcia N, Lieberam I, Johnson D, Jessell TM, Ginty DD, Kolodkin AL.

Neuron. 2005 Dec 22;48(6):949-64.

46.

High-resolution structure of the catalytic region of MICAL (molecule interacting with CasL), a multidomain flavoenzyme-signaling molecule.

Siebold C, Berrow N, Walter TS, Harlos K, Owens RJ, Stuart DI, Terman JR, Kolodkin AL, Pasterkamp RJ, Jones EY.

Proc Natl Acad Sci U S A. 2005 Nov 15;102(46):16836-41. Epub 2005 Nov 7.

47.

MICAL flavoprotein monooxygenases: expression during neural development and following spinal cord injuries in the rat.

Pasterkamp RJ, Dai HN, Terman JR, Wahlin KJ, Kim B, Bregman BS, Popovich PG, Kolodkin AL.

Mol Cell Neurosci. 2006 Jan;31(1):52-69. Epub 2005 Oct 17.

PMID:
16230022
48.

Secreted semaphorins modulate synaptic transmission in the adult hippocampus.

Sahay A, Kim CH, Sepkuty JP, Cho E, Huganir RL, Ginty DD, Kolodkin AL.

J Neurosci. 2005 Apr 6;25(14):3613-20.

49.

Development: edging towards circuitry, behavior and disease.

Dodd J, Kolodkin AL.

Curr Opin Neurobiol. 2005 Feb;15(1):1-6. Review. No abstract available.

PMID:
15721737
50.

Semaphorin 5A is a bifunctional axon guidance cue regulated by heparan and chondroitin sulfate proteoglycans.

Kantor DB, Chivatakarn O, Peer KL, Oster SF, Inatani M, Hansen MJ, Flanagan JG, Yamaguchi Y, Sretavan DW, Giger RJ, Kolodkin AL.

Neuron. 2004 Dec 16;44(6):961-75.

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