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Items: 37

1.

De novo design of self-assembling helical protein filaments.

Shen H, Fallas JA, Lynch E, Sheffler W, Parry B, Jannetty N, Decarreau J, Wagenbach M, Vicente JJ, Chen J, Wang L, Dowling Q, Oberdorfer G, Stewart L, Wordeman L, De Yoreo J, Jacobs-Wagner C, Kollman J, Baker D.

Science. 2018 Nov 9;362(6415):705-709. doi: 10.1126/science.aau3775.

PMID:
30409885
2.

The Structure and Dynamics of C. elegans Tubulin Reveals the Mechanistic Basis of Microtubule Growth.

Chaaban S, Jariwala S, Hsu CT, Redemann S, Kollman JM, Müller-Reichert T, Sept D, Bui KH, Brouhard GJ.

Dev Cell. 2018 Oct 22;47(2):191-204.e8. doi: 10.1016/j.devcel.2018.08.023. Epub 2018 Sep 20.

PMID:
30245157
3.

T cell activation triggers reversible inosine-5'-monophosphate dehydrogenase assembly.

Duong-Ly KC, Kuo YM, Johnson MC, Cote JM, Kollman JM, Soboloff J, Rall GF, Andrews AJ, Peterson JR.

J Cell Sci. 2018 Sep 5;131(17). pii: jcs223289. doi: 10.1242/jcs.223289.

PMID:
30154209
4.

Cryo-EM structure of the bacterial actin AlfA reveals unique assembly and ATP-binding interactions and the absence of a conserved subdomain.

Usluer GD, DiMaio F, Yang SK, Hansen JM, Polka JK, Mullins RD, Kollman JM.

Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3356-3361. doi: 10.1073/pnas.1715836115. Epub 2018 Feb 13.

5.

Reconstituted IMPDH polymers accommodate both catalytically active and inactive conformations.

Anthony SA, Burrell AL, Johnson MC, Duong-Ly KC, Kuo YM, Simonet JC, Michener P, Andrews A, Kollman JM, Peterson JR.

Mol Biol Cell. 2017 Aug 9. pii: mbc.E17-04-0263. doi: 10.1091/mbc.E17-04-0263. [Epub ahead of print]

6.

The glycolytic enzyme phosphofructokinase-1 assembles into filaments.

Webb BA, Dosey AM, Wittmann T, Kollman JM, Barber DL.

J Cell Biol. 2017 Aug 7;216(8):2305-2313. doi: 10.1083/jcb.201701084. Epub 2017 Jun 23.

7.

Corrigendum: The tetrameric kinesin Kif25 suppresses pre-mitotic centrosome separation to establish proper spindle orientation.

Decarreau J, Wagenbach M, Lynch E, Halpern AR, Vaughan JC, Kollman J, Wordeman L.

Nat Cell Biol. 2017 May 31;19(6):740. doi: 10.1038/ncb3546. No abstract available.

PMID:
28561052
8.

Single-particle electron microscopy structure of UDP-glucose:glycoprotein glucosyltransferase suggests a selectivity mechanism for misfolded proteins.

Calles-Garcia D, Yang M, Soya N, Melero R, Ménade M, Ito Y, Vargas J, Lukacs GL, Kollman JM, Kozlov G, Gehring K.

J Biol Chem. 2017 Jul 7;292(27):11499-11507. doi: 10.1074/jbc.M117.789495. Epub 2017 May 10.

9.

Human CTP synthase filament structure reveals the active enzyme conformation.

Lynch EM, Hicks DR, Shepherd M, Endrizzi JA, Maker A, Hansen JM, Barry RM, Gitai Z, Baldwin EP, Kollman JM.

Nat Struct Mol Biol. 2017 Jun;24(6):507-514. doi: 10.1038/nsmb.3407. Epub 2017 May 1.

10.

The tetrameric kinesin Kif25 suppresses pre-mitotic centrosome separation to establish proper spindle orientation.

Decarreau J, Wagenbach M, Lynch E, Halpern AR, Vaughan JC, Kollman J, Wordeman L.

Nat Cell Biol. 2017 Apr;19(4):384-390. doi: 10.1038/ncb3486. Epub 2017 Mar 6. Erratum in: Nat Cell Biol. 2017 May 31;19(6):740.

11.

Vitrification after multiple rounds of sample application and blotting improves particle density on cryo-electron microscopy grids.

Snijder J, Borst AJ, Dosey A, Walls AC, Burrell A, Reddy VS, Kollman JM, Veesler D.

J Struct Biol. 2017 Apr;198(1):38-42. doi: 10.1016/j.jsb.2017.02.008. Epub 2017 Feb 22.

12.

Inhibition of Escherichia coli CTP Synthetase by NADH and Other Nicotinamides and Their Mutual Interactions with CTP and GTP.

Habrian C, Chandrasekhara A, Shahrvini B, Hua B, Lee J, Jesinghaus R, Barry R, Gitai Z, Kollman J, Baldwin EP.

Biochemistry. 2016 Oct 4;55(39):5554-5565. Epub 2016 Sep 19.

13.

Structure of the magnetosome-associated actin-like MamK filament at subnanometer resolution.

Bergeron JR, Hutto R, Ozyamak E, Hom N, Hansen J, Draper O, Byrne ME, Keyhani S, Komeili A, Kollman JM.

Protein Sci. 2017 Jan;26(1):93-102. doi: 10.1002/pro.2979. Epub 2016 Aug 19.

14.

Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure.

Greenberg CH, Kollman J, Zelter A, Johnson R, MacCoss MJ, Davis TN, Agard DA, Sali A.

J Struct Biol. 2016 Jun;194(3):303-10. doi: 10.1016/j.jsb.2016.03.006. Epub 2016 Mar 8.

15.

Interaction of CK1δ with γTuSC ensures proper microtubule assembly and spindle positioning.

Peng Y, Moritz M, Han X, Giddings TH, Lyon A, Kollman J, Winey M, Yates J 3rd, Agard DA, Drubin DG, Barnes G.

Mol Biol Cell. 2015 Jul 1;26(13):2505-18. doi: 10.1091/mbc.E14-12-1627. Epub 2015 May 13.

16.

Ring closure activates yeast γTuRC for species-specific microtubule nucleation.

Kollman JM, Greenberg CH, Li S, Moritz M, Zelter A, Fong KK, Fernandez JJ, Sali A, Kilmartin J, Davis TN, Agard DA.

Nat Struct Mol Biol. 2015 Feb;22(2):132-7. doi: 10.1038/nsmb.2953. Epub 2015 Jan 19.

17.

Large-scale filament formation inhibits the activity of CTP synthetase.

Barry RM, Bitbol AF, Lorestani A, Charles EJ, Habrian CH, Hansen JM, Li HJ, Baldwin EP, Wingreen NS, Kollman JM, Gitai Z.

Elife. 2014 Jul 16;3:e03638. doi: 10.7554/eLife.03638.

18.

Accessory factors promote AlfA-dependent plasmid segregation by regulating filament nucleation, disassembly, and bundling.

Polka JK, Kollman JM, Mullins RD.

Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2176-81. doi: 10.1073/pnas.1304127111. Epub 2014 Jan 30.

19.

Bacterial actins and their diversity.

Ozyamak E, Kollman JM, Komeili A.

Biochemistry. 2013 Oct 8;52(40):6928-39. doi: 10.1021/bi4010792. Epub 2013 Sep 24. Review.

20.

The bacterial actin MamK: in vitro assembly behavior and filament architecture.

Ozyamak E, Kollman J, Agard DA, Komeili A.

J Biol Chem. 2013 Feb 8;288(6):4265-77. doi: 10.1074/jbc.M112.417030. Epub 2012 Nov 30.

21.

Microtubule nucleation by γ-tubulin complexes.

Kollman JM, Merdes A, Mourey L, Agard DA.

Nat Rev Mol Cell Biol. 2011 Oct 12;12(11):709-21. doi: 10.1038/nrm3209. Review.

PMID:
21993292
22.

Crystal structure of γ-tubulin complex protein GCP4 provides insight into microtubule nucleation.

Guillet V, Knibiehler M, Gregory-Pauron L, Remy MH, Chemin C, Raynaud-Messina B, Bon C, Kollman JM, Agard DA, Merdes A, Mourey L.

Nat Struct Mol Biol. 2011 Jul 3;18(8):915-9. doi: 10.1038/nsmb.2083.

23.

Architecture and assembly of a divergent member of the ParM family of bacterial actin-like proteins.

Rivera CR, Kollman JM, Polka JK, Agard DA, Mullins RD.

J Biol Chem. 2011 Apr 22;286(16):14282-90. doi: 10.1074/jbc.M110.203828. Epub 2011 Feb 21.

24.

Microtubule nucleating gamma-TuSC assembles structures with 13-fold microtubule-like symmetry.

Kollman JM, Polka JK, Zelter A, Davis TN, Agard DA.

Nature. 2010 Aug 12;466(7308):879-82. doi: 10.1038/nature09207. Epub 2010 Jul 14.

25.

Localization and orientation of the gamma-tubulin small complex components using protein tags as labels for single particle EM.

Choy RM, Kollman JM, Zelter A, Davis TN, Agard DA.

J Struct Biol. 2009 Dec;168(3):571-4. doi: 10.1016/j.jsb.2009.08.012. Epub 2009 Aug 31.

26.

The structure and assembly dynamics of plasmid actin AlfA imply a novel mechanism of DNA segregation.

Polka JK, Kollman JM, Agard DA, Mullins RD.

J Bacteriol. 2009 Oct;191(20):6219-30. doi: 10.1128/JB.00676-09. Epub 2009 Aug 7.

27.

Two families of synthetic peptides that enhance fibrin turbidity and delay fibrinolysis by different mechanisms.

Pandi L, Kollman JM, Lopez-Lira F, Burrows JM, Riley M, Doolittle RF.

Biochemistry. 2009 Aug 4;48(30):7201-8. doi: 10.1021/bi900647g.

PMID:
19588915
28.

Crystal structure of human fibrinogen.

Kollman JM, Pandi L, Sawaya MR, Riley M, Doolittle RF.

Biochemistry. 2009 May 12;48(18):3877-86. doi: 10.1021/bi802205g.

PMID:
19296670
29.

The structure of the gamma-tubulin small complex: implications of its architecture and flexibility for microtubule nucleation.

Kollman JM, Zelter A, Muller EG, Fox B, Rice LM, Davis TN, Agard DA.

Mol Biol Cell. 2008 Jan;19(1):207-15. Epub 2007 Oct 31.

30.

Automated acquisition of electron microscopic random conical tilt sets.

Zheng SQ, Kollman JM, Braunfeld MB, Sedat JW, Agard DA.

J Struct Biol. 2007 Jan;157(1):148-55. Epub 2006 Nov 3.

31.

Natively unfolded regions of the vertebrate fibrinogen molecule.

Doolittle RF, Kollman JM.

Proteins. 2006 May 1;63(2):391-7. Review.

PMID:
16288455
32.
33.

Unusual non-crystallographic symmetry in crystals of a 420 kDa crustacean clottable protein.

Kollman JM, Doolittle RF.

Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):485-9. Epub 2005 Mar 24.

PMID:
15805605
34.

Crystal structure of native chicken fibrinogen at 2.7 A resolution.

Yang Z, Kollman JM, Pandi L, Doolittle RF.

Biochemistry. 2001 Oct 23;40(42):12515-23.

PMID:
11601975
35.
36.

The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins.

Tseng TT, Gratwick KS, Kollman J, Park D, Nies DH, Goffeau A, Saier MH Jr.

J Mol Microbiol Biotechnol. 1999 Aug;1(1):107-25. Review.

PMID:
10941792
37.

Is FatP a long-chain fatty acid transporter?

Saier MH Jr, Kollman JM.

Mol Microbiol. 1999 Aug;33(3):670-2. No abstract available.

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