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Items: 27

1.

Targeted Approach to Distinguish and Determine Absolute Levels of GDF8 and GDF11 in Mouse Serum.

Camparini L, Kollipara L, Sinagra G, Loffredo FS, Sickmann A, Shevchuk O.

Proteomics. 2020 Feb 27:e1900104. doi: 10.1002/pmic.201900104. [Epub ahead of print]

PMID:
32104967
2.

Inhibition of osimertinib-resistant epidermal growth factor receptor EGFR-T790M/C797S.

Lategahn J, Keul M, Klövekorn P, Tumbrink HL, Niggenaber J, Müller MP, Hodson L, Flaßhoff M, Hardick J, Grabe T, Engel J, Schultz-Fademrecht C, Baumann M, Ketzer J, Mühlenberg T, Hiller W, Günther G, Unger A, Müller H, Heimsoeth A, Golz C, Blank-Landeshammer B, Kollipara L, Zahedi RP, Strohmann C, Hengstler JG, van Otterlo WAL, Bauer S, Rauh D.

Chem Sci. 2019 Oct 4;10(46):10789-10801. doi: 10.1039/c9sc03445e. eCollection 2019 Dec 14.

3.

Proteogenomics of Colorectal Cancer Liver Metastases: Complementing Precision Oncology with Phenotypic Data.

Blank-Landeshammer B, Richard VR, Mitsa G, Marques M, LeBlanc A, Kollipara L, Feldmann I, Couetoux du Tertre M, Gambaro K, McNamara S, Spatz A, Zahedi RP, Sickmann A, Batist G, Borchers CH.

Cancers (Basel). 2019 Dec 1;11(12). pii: E1907. doi: 10.3390/cancers11121907.

4.

Investigating the Role of Mitochondria in Type 2 Diabetes - Lessons from Lipidomics and Proteomics Studies of Skeletal Muscle and Liver.

Kappler L, Kollipara L, Lehmann R, Sickmann A.

Adv Exp Med Biol. 2019;1158:143-182. doi: 10.1007/978-981-13-8367-0_9.

PMID:
31452140
5.

Linking bioenergetic function of mitochondria to tissue-specific molecular fingerprints.

Kappler L, Hoene M, Hu C, von Toerne C, Li J, Bleher D, Hoffmann C, Böhm A, Kollipara L, Zischka H, Königsrainer A, Häring HU, Peter A, Xu G, Sickmann A, Hauck SM, Weigert C, Lehmann R.

Am J Physiol Endocrinol Metab. 2019 Aug 1;317(2):E374-E387. doi: 10.1152/ajpendo.00088.2019. Epub 2019 Jun 18.

PMID:
31211616
6.

Omics-based responses induced by bosentan in human hepatoma HepaRG cell cultures.

Rodrigues RM, Kollipara L, Chaudhari U, Sachinidis A, Zahedi RP, Sickmann A, Kopp-Schneider A, Jiang X, Keun H, Hengstler J, Oorts M, Annaert P, Hoeben E, Gijbels E, De Kock J, Vanhaecke T, Rogiers V, Vinken M.

Arch Toxicol. 2018 Jun;92(6):1939-1952. doi: 10.1007/s00204-018-2214-z. Epub 2018 May 14.

7.

Disentangling thermal stress responses in a reef-calcifier and its photosymbionts by shotgun proteomics.

Stuhr M, Blank-Landeshammer B, Reymond CE, Kollipara L, Sickmann A, Kucera M, Westphal H.

Sci Rep. 2018 Feb 23;8(1):3524. doi: 10.1038/s41598-018-21875-z.

8.

Simple, scalable, and ultrasensitive tip-based identification of protease substrates.

Shema G, Nguyen MTN, Solari FA, Loroch S, Venne AS, Kollipara L, Sickmann A, Verhelst SHL, Zahedi RP.

Mol Cell Proteomics. 2018 Apr;17(4):826-834. doi: 10.1074/mcp.TIR117.000302. Epub 2018 Jan 22.

9.

In-depth phenotyping of lymphoblastoid cells suggests selective cellular vulnerability in Marinesco-Sjögren syndrome.

Kollipara L, Buchkremer S, Coraspe JAG, Hathazi D, Senderek J, Weis J, Zahedi RP, Roos A.

Oncotarget. 2017 Jul 28;8(40):68493-68516. doi: 10.18632/oncotarget.19663. eCollection 2017 Sep 15.

10.

Combining De Novo Peptide Sequencing Algorithms, A Synergistic Approach to Boost Both Identifications and Confidence in Bottom-up Proteomics.

Blank-Landeshammer B, Kollipara L, Biß K, Pfenninger M, Malchow S, Shuvaev K, Zahedi RP, Sickmann A.

J Proteome Res. 2017 Sep 1;16(9):3209-3218. doi: 10.1021/acs.jproteome.7b00198. Epub 2017 Aug 22.

PMID:
28741358
11.

The FERM protein EPB41L5 regulates actomyosin contractility and focal adhesion formation to maintain the kidney filtration barrier.

Schell C, Rogg M, Suhm M, Helmstädter M, Sellung D, Yasuda-Yamahara M, Kretz O, Küttner V, Suleiman H, Kollipara L, Zahedi RP, Sickmann A, Eimer S, Shaw AS, Kramer-Zucker A, Hirano-Kobayashi M, Abe T, Aizawa S, Grahammer F, Hartleben B, Dengjel J, Huber TB.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):E4621-E4630. doi: 10.1073/pnas.1617004114. Epub 2017 May 23.

12.

Tracking Effects of SIL1 Increase: Taking a Closer Look Beyond the Consequences of Elevated Expression Level.

Labisch T, Buchkremer S, Phan V, Kollipara L, Gatz C, Lentz C, Nolte K, Vervoorts J, Coraspe JAG, Sickmann A, Carr S, Zahedi RP, Weis J, Roos A.

Mol Neurobiol. 2018 Mar;55(3):2524-2546. doi: 10.1007/s12035-017-0494-6. Epub 2017 Apr 11.

PMID:
28401474
13.

DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs.

Rieder V, Blank-Landeshammer B, Stuhr M, Schell T, Biß K, Kollipara L, Meyer A, Pfenninger M, Westphal H, Sickmann A, Rahnenführer J.

BMC Bioinformatics. 2017 Mar 3;18(1):148. doi: 10.1186/s12859-017-1514-2.

14.

Deciphering lymphoma pathogenesis via state-of-the-art mass spectrometry-based quantitative proteomics.

Psatha K, Kollipara L, Voutyraki C, Divanach P, Sickmann A, Rassidakis GZ, Drakos E, Aivaliotis M.

J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Mar 15;1047:2-14. doi: 10.1016/j.jchromb.2016.11.005. Epub 2016 Nov 15. Review.

PMID:
27979587
15.

A Ribonucleoprotein Supercomplex Involved in trans-Splicing of Organelle Group II Introns.

Reifschneider O, Marx C, Jacobs J, Kollipara L, Sickmann A, Wolters D, Kück U.

J Biol Chem. 2016 Oct 28;291(44):23330-23342. Epub 2016 Sep 19.

16.

The Caveolin-3 G56S sequence variant of unknown significance: Muscle biopsy findings and functional cell biological analysis.

Brauers E, Roos A, Kollipara L, Zahedi RP, Beckmann A, Mohanadas N, Bauer H, Häusler M, Thoma S, Kress W, Senderek J, Weis J.

Proteomics Clin Appl. 2017 Jan;11(1-2). doi: 10.1002/prca.201600007. Epub 2016 Nov 14.

17.

Bottom-up proteomics suggests an association between differential expression of mitochondrial proteins and chronic fatigue syndrome.

Ciregia F, Kollipara L, Giusti L, Zahedi RP, Giacomelli C, Mazzoni MR, Giannaccini G, Scarpellini P, Urbani A, Sickmann A, Lucacchini A, Bazzichi L.

Transl Psychiatry. 2016 Sep 27;6(9):e904. doi: 10.1038/tp.2016.184.

18.

Insight into the Inhibition of Drug-Resistant Mutants of the Receptor Tyrosine Kinase EGFR.

Engel J, Becker C, Lategahn J, Keul M, Ketzer J, Mühlenberg T, Kollipara L, Schultz-Fademrecht C, Zahedi RP, Bauer S, Rauh D.

Angew Chem Int Ed Engl. 2016 Aug 26;55(36):10909-12. doi: 10.1002/anie.201605011. Epub 2016 Aug 5.

PMID:
27496389
19.

"Watching the Detectives" report of the general assembly of the EU project DETECTIVE Brussels, 24-25 November 2015.

Fernando RN, Chaudhari U, Escher SE, Hengstler JG, Hescheler J, Jennings P, Keun HC, Kleinjans JCS, Kolde R, Kollipara L, Kopp-Schneider A, Limonciel A, Nemade H, Nguemo F, Peterson H, Prieto P, Rodrigues RM, Sachinidis A, Schäfer C, Sickmann A, Spitkovsky D, Stöber R, van Breda SGJ, van de Water B, Vivier M, Zahedi RP, Vinken M, Rogiers V.

Arch Toxicol. 2016 Jun;90(6):1529-1539. doi: 10.1007/s00204-016-1719-6. Epub 2016 Apr 29.

20.

Proteome Profiling and Ultrastructural Characterization of the Human RCMH Cell Line: Myoblastic Properties and Suitability for Myopathological Studies.

Kollipara L, Buchkremer S, Weis J, Brauers E, Hoss M, Rütten S, Caviedes P, Zahedi RP, Roos A.

J Proteome Res. 2016 Mar 4;15(3):945-55. doi: 10.1021/acs.jproteome.5b00972. Epub 2016 Feb 15.

PMID:
26781476
21.

Two Birds with One Stone: Parallel Quantification of Proteome and Phosphoproteome Using iTRAQ.

Solari FA, Kollipara L, Sickmann A, Zahedi RP.

Methods Mol Biol. 2016;1394:25-41. doi: 10.1007/978-1-4939-3341-9_3.

PMID:
26700039
22.

A pioneer protein is part of a large complex involved in trans-splicing of a group II intron in the chloroplast of Chlamydomonas reinhardtii.

Lefebvre-Legendre L, Reifschneider O, Kollipara L, Sickmann A, Wolters D, Kück U, Goldschmidt-Clermont M.

Plant J. 2016 Jan;85(1):57-69. doi: 10.1111/tpj.13089.

23.

Cellular Signature of SIL1 Depletion: Disease Pathogenesis due to Alterations in Protein Composition Beyond the ER Machinery.

Roos A, Kollipara L, Buchkremer S, Labisch T, Brauers E, Gatz C, Lentz C, Gerardo-Nava J, Weis J, Zahedi RP.

Mol Neurobiol. 2016 Oct;53(8):5527-41. doi: 10.1007/s12035-015-9456-z. Epub 2015 Oct 14.

PMID:
26468156
24.

Myopathy in Marinesco-Sjögren syndrome links endoplasmic reticulum chaperone dysfunction to nuclear envelope pathology.

Roos A, Buchkremer S, Kollipara L, Labisch T, Gatz C, Zitzelsberger M, Brauers E, Nolte K, Schröder JM, Kirschner J, Jesse CM, Goebel HH, Goswami A, Zimmermann R, Zahedi RP, Senderek J, Weis J.

Acta Neuropathol. 2014 May;127(5):761-77. doi: 10.1007/s00401-013-1224-4. Epub 2013 Dec 21.

PMID:
24362440
25.

The next level of complexity: crosstalk of posttranslational modifications.

Venne AS, Kollipara L, Zahedi RP.

Proteomics. 2014 Mar;14(4-5):513-24. doi: 10.1002/pmic.201300344. Epub 2014 Jan 6. Review.

PMID:
24339426
26.

Tyr728 in the kinase domain of the murine kinase suppressor of RAS 1 regulates binding and activation of the mitogen-activated protein kinase kinase.

Sibilski C, Mueller T, Kollipara L, Zahedi RP, Rapp UR, Rudel T, Baljuls A.

J Biol Chem. 2013 Dec 6;288(49):35237-52. doi: 10.1074/jbc.M113.490235. Epub 2013 Oct 24.

27.

Protein carbamylation: in vivo modification or in vitro artefact?

Kollipara L, Zahedi RP.

Proteomics. 2013 Mar;13(6):941-4. doi: 10.1002/pmic.201200452.

PMID:
23335428

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