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Items: 1 to 50 of 291

1.

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, Phillippy AM, Schatz MC, Myers G, DePristo MA, Ruan J, Marschall T, Sedlazeck FJ, Zook JM, Li H, Koren S, Carroll A, Rank DR, Hunkapiller MW.

Nat Biotechnol. 2019 Aug 12. doi: 10.1038/s41587-019-0217-9. [Epub ahead of print]

PMID:
31406327
2.

Design of a brain-penetrant CDK4/6 inhibitor for glioblastoma.

Bronner SM, Merrick KA, Murray J, Salphati L, Moffat JG, Pang J, Sneeringer CJ, Dompe N, Cyr P, Purkey H, Boenig GL, Li J, Kolesnikov A, Larouche-Gauthier R, Lai KW, Shen X, Aubert-Nicol S, Chen YC, Cheong J, Crawford JJ, Hafner M, Haghshenas P, Jakalian A, Leclerc JP, Lim NK, O'Brien T, Plise EG, Shalan H, Sturino C, Wai J, Xiao Y, Yin J, Zhao L, Gould S, Olivero A, Heffron TP.

Bioorg Med Chem Lett. 2019 Aug 15;29(16):2294-2301. doi: 10.1016/j.bmcl.2019.06.021. Epub 2019 Jun 26.

PMID:
31307887
3.

Photoreceptors in a mouse model of Leigh syndrome are capable of normal light-evoked signaling.

Gospe SM 3rd, Travis AM, Kolesnikov AV, Klingeborn M, Wang L, Kefalov VJ, Arshavsky VY.

J Biol Chem. 2019 Aug 16;294(33):12432-12443. doi: 10.1074/jbc.RA119.007945. Epub 2019 Jun 27.

PMID:
31248988
4.

Effect of fine-tuning pore structures on the dynamics of confined water.

Kolesnikov AI, Anovitz LM, Hawthorne FC, Podlesnyak A, Schenter GK.

J Chem Phys. 2019 May 28;150(20):204706. doi: 10.1063/1.5096771.

PMID:
31153199
5.

Quantum Spin Ice Dynamics in the Dipole-Octupole Pyrochlore Magnet Ce_{2}Zr_{2}O_{7}.

Gaudet J, Smith EM, Dudemaine J, Beare J, Buhariwalla CRC, Butch NP, Stone MB, Kolesnikov AI, Xu G, Yahne DR, Ross KA, Marjerrison CA, Garrett JD, Luke GM, Bianchi AD, Gaulin BD.

Phys Rev Lett. 2019 May 10;122(18):187201. doi: 10.1103/PhysRevLett.122.187201.

PMID:
31144900
6.

Large Positive Zero-Field Splitting in the Cluster Magnet Ba3CeRu2O9.

Chen Q, Fan S, Taddei KM, Stone MB, Kolesnikov AI, Cheng J, Musfeldt JL, Zhou H, Aczel AA.

J Am Chem Soc. 2019 Jun 26;141(25):9928-9936. doi: 10.1021/jacs.9b03389. Epub 2019 Jun 12.

PMID:
31136169
7.

Development of Potent and Selective Pyrazolopyrimidine IRAK4 Inhibitors.

Bryan MC, Drobnick J, Gobbi A, Kolesnikov A, Chen Y, Rajapaksa N, Ndubaku C, Feng J, Chang W, Francis R, Yu C, Choo EF, DeMent K, Ran Y, An L, Emson C, Huang Z, Sujatha-Bhaskar S, Brightbill H, DiPasquale A, Maher J, Wai J, McKenzie BS, Lupardus PJ, Zarrin AA, Kiefer JR.

J Med Chem. 2019 Jul 11;62(13):6223-6240. doi: 10.1021/acs.jmedchem.9b00439. Epub 2019 May 24.

PMID:
31082230
8.

Magnetic Excitations of the Classical Spin Liquid MgCr_{2}O_{4}.

Bai X, Paddison JAM, Kapit E, Koohpayeh SM, Wen JJ, Dutton SE, Savici AT, Kolesnikov AI, Granroth GE, Broholm CL, Chalker JT, Mourigal M.

Phys Rev Lett. 2019 Mar 8;122(9):097201. doi: 10.1103/PhysRevLett.122.097201.

PMID:
30932548
9.

New Insights about CuO Nanoparticles from Inelastic Neutron Scattering.

Spencer EC, Kolesnikov AI, Woodfield BF, Ross NL.

Nanomaterials (Basel). 2019 Feb 26;9(3). pii: E312. doi: 10.3390/nano9030312.

10.

How context influences the interpretation of facial expressions: a source localization high-density EEG study on the "Kuleshov effect".

Calbi M, Siri F, Heimann K, Barratt D, Gallese V, Kolesnikov A, Umiltà MA.

Sci Rep. 2019 Feb 14;9(1):2107. doi: 10.1038/s41598-018-37786-y.

11.

Simulation of Inelastic Neutron Scattering Spectra Using OCLIMAX.

Cheng YQ, Daemen LL, Kolesnikov AI, Ramirez-Cuesta AJ.

J Chem Theory Comput. 2019 Mar 12;15(3):1974-1982. doi: 10.1021/acs.jctc.8b01250. Epub 2019 Feb 20.

PMID:
30735379
12.

Optimization of Pan-Pim Kinase Activity and Oral Bioavailability Leading to Diaminopyrazole (GDC-0339) for the Treatment of Multiple Myeloma.

Wang X, Blackaby W, Allen V, Chan GKY, Chang JH, Chiang PC, Diène C, Drummond J, Do S, Fan E, Harstad EB, Hodges A, Hu H, Jia W, Kofie W, Kolesnikov A, Lyssikatos JP, Ly J, Matteucci M, Moffat JG, Munugalavadla V, Murray J, Nash D, Noland CL, Del Rosario G, Ross L, Rouse C, Sharpe A, Slaga D, Sun M, Tsui V, Wallweber H, Yu SF, Ebens AJ.

J Med Chem. 2019 Feb 28;62(4):2140-2153. doi: 10.1021/acs.jmedchem.8b01857. Epub 2019 Feb 20.

PMID:
30715878
13.

Conditional deletion of Des1 in the mouse retina does not impair the visual cycle in cones.

Kiser PD, Kolesnikov AV, Kiser JZ, Dong Z, Chaurasia B, Wang L, Summers SA, Hoang T, Blackshaw S, Peachey NS, Kefalov VJ, Palczewski K.

FASEB J. 2019 Apr;33(4):5782-5792. doi: 10.1096/fj.201802493R. Epub 2019 Jan 15.

PMID:
30645148
14.

Skyrmionium - high velocity without the skyrmion Hall effect.

Kolesnikov AG, Stebliy ME, Samardak AS, Ognev AV.

Sci Rep. 2018 Nov 16;8(1):16966. doi: 10.1038/s41598-018-34934-2.

15.

Composite topological structure of domain walls in synthetic antiferromagnets.

Kolesnikov AG, Plotnikov VS, Pustovalov EV, Samardak AS, Chebotkevich LA, Ognev AV, Tretiakov OA.

Sci Rep. 2018 Oct 25;8(1):15794. doi: 10.1038/s41598-018-33780-6.

16.

Examining the Role of Cone-expressed RPE65 in Mouse Cone Function.

Kolesnikov AV, Tang PH, Kefalov VJ.

Sci Rep. 2018 Sep 21;8(1):14201. doi: 10.1038/s41598-018-32667-w.

17.

Dual Nature of Magnetism in a Uranium Heavy-Fermion System.

Lee J, Matsuda M, Mydosh JA, Zaliznyak I, Kolesnikov AI, Süllow S, Ruff JPC, Granroth GE.

Phys Rev Lett. 2018 Aug 3;121(5):057201. doi: 10.1103/PhysRevLett.121.057201.

PMID:
30118279
18.

High-resolution stigmatic spectrograph for a wavelength range of 12.5-30 nm.

Shatokhin AN, Kolesnikov AO, Sasorov PV, Vishnyakov EA, Ragozin EN.

Opt Express. 2018 Jul 23;26(15):19009-19019. doi: 10.1364/OE.26.019009.

PMID:
30114161
19.

Effects of Confinement and Pressure on the Vibrational Behavior of Nano-Confined Propane.

Gautam S, Kolesnikov AI, Rother G, Dai S, Qiao ZA, Cole D.

J Phys Chem A. 2018 Aug 23;122(33):6736-6745. doi: 10.1021/acs.jpca.8b05028. Epub 2018 Aug 8.

PMID:
30040898
20.

Complexity of Intercalation in MXenes: Destabilization of Urea by Two-Dimensional Titanium Carbide.

Overbury SH, Kolesnikov AI, Brown GM, Zhang Z, Nair GS, Sacci RL, Lotfi R, van Duin ACT, Naguib M.

J Am Chem Soc. 2018 Aug 15;140(32):10305-10314. doi: 10.1021/jacs.8b05913. Epub 2018 Aug 6.

PMID:
30036053
21.

Fast Rotational Diffusion of Water Molecules in a 2D Hydrogen Bond Network at Cryogenic Temperatures.

Prisk TR, Hoffmann C, Kolesnikov AI, Mamontov E, Podlesnyak AA, Wang X, Kent PRC, Anovitz LM.

Phys Rev Lett. 2018 May 11;120(19):196001. doi: 10.1103/PhysRevLett.120.196001.

PMID:
29799243
22.

Effects of Enhanced Flexibility and Pore Size Distribution on Adsorption-Induced Deformation of Mesoporous Materials.

Kolesnikov AL, Georgi N, Budkov YA, Möllmer J, Hofmann J, Adolphs J, Gläser R.

Langmuir. 2018 Jun 26;34(25):7575-7584. doi: 10.1021/acs.langmuir.8b00591. Epub 2018 Jun 13.

PMID:
29792800
23.

Catalytically important flavin linked through a phosphoester bond in a eukaryotic fumarate reductase.

Serebryakova MV, Bertsova YV, Sokolov SS, Kolesnikov AA, Baykov AA, Bogachev AV.

Biochimie. 2018 Jun;149:34-40. doi: 10.1016/j.biochi.2018.03.013. Epub 2018 Apr 3.

PMID:
29621574
24.

Discovery of a Potent (4 R,5 S)-4-Fluoro-5-methylproline Sulfonamide Transient Receptor Potential Ankyrin 1 Antagonist and Its Methylene Phosphate Prodrug Guided by Molecular Modeling.

Chen H, Volgraf M, Do S, Kolesnikov A, Shore DG, Verma VA, Villemure E, Wang L, Chen Y, Hu B, Lu AJ, Wu G, Xu X, Yuen PW, Zhang Y, Erickson SD, Dahl M, Brotherton-Pleiss C, Tay S, Ly JQ, Murray LJ, Chen J, Amm D, Lange W, Hackos DH, Reese RM, Shields SD, Lyssikatos JP, Safina BS, Estrada AA.

J Med Chem. 2018 Apr 26;61(8):3641-3659. doi: 10.1021/acs.jmedchem.8b00117. Epub 2018 Apr 12.

PMID:
29590749
25.

LRIT1 Modulates Adaptive Changes in Synaptic Communication of Cone Photoreceptors.

Sarria I, Cao Y, Wang Y, Ingram NT, Orlandi C, Kamasawa N, Kolesnikov AV, Pahlberg J, Kefalov VJ, Sampath AP, Martemyanov KA.

Cell Rep. 2018 Mar 27;22(13):3562-3573. doi: 10.1016/j.celrep.2018.03.008.

26.

Study of the Oxime-induced Reactivation of Acetyl- and Butyrylcholinesterase of Human with Inhibition of Organophosphorus Insecticide In Vitro.

Kolesnikov AM, Yuidin MA, Nikiforov AS, Ivanov IM, Vengerovich NG, Makacheev AS.

Bull Exp Biol Med. 2018 Mar;164(5):624-628. doi: 10.1007/s10517-018-4046-5. Epub 2018 Mar 26.

PMID:
29577198
27.

Retinoid isomerase inhibitors impair but do not block mammalian cone photoreceptor function.

Kiser PD, Zhang J, Sharma A, Angueyra JM, Kolesnikov AV, Badiee M, Tochtrop GP, Kinoshita J, Peachey NS, Li W, Kefalov VJ, Palczewski K.

J Gen Physiol. 2018 Apr 2;150(4):571-590. doi: 10.1085/jgp.201711815. Epub 2018 Mar 2.

28.

Intermediate-valence state of the Sm and Eu in SmB6 and EuCu2Si2: neutron spectroscopy data and analysis.

Savchenkov PS, Alekseev PA, Podlesnyak A, Kolesnikov AI, Nemkovski KS.

J Phys Condens Matter. 2018 Jan 11;30(5):055801. doi: 10.1088/1361-648X/aaa1aa. [Epub ahead of print]

PMID:
29324435
29.

Estimating Barriers to Gene Flow from Distorted Isolation-by-Distance Patterns.

Ringbauer H, Kolesnikov A, Field DL, Barton NH.

Genetics. 2018 Mar;208(3):1231-1245. doi: 10.1534/genetics.117.300638. Epub 2018 Jan 8.

30.

A novel human pain insensitivity disorder caused by a point mutation in ZFHX2.

Habib AM, Matsuyama A, Okorokov AL, Santana-Varela S, Bras JT, Aloisi AM, Emery EC, Bogdanov YD, Follenfant M, Gossage SJ, Gras M, Humphrey J, Kolesnikov A, Le Cann K, Li S, Minett MS, Pereira V, Ponsolles C, Sikandar S, Torres JM, Yamaoka K, Zhao J, Komine Y, Yamamori T, Maniatis N, Panov KI, Houlden H, Ramirez JD, Bennett DLH, Marsili L, Bachiocco V, Wood JN, Cox JJ.

Brain. 2018 Feb 1;141(2):365-376. doi: 10.1093/brain/awx326.

31.

Intermediate valence state of the Sm and Eu in SmB<sub>6</sub> and EuCu<sub>2</sub>Si<sub>2</sub>: neutron spectroscopy data and analysis.

Savchenkov P, Alekseev P, Podlesnyak A, Kolesnikov A, Nemkovski K.

J Phys Condens Matter. 2017 Dec 14. doi: 10.1088/1361-648X/aaa1aa. [Epub ahead of print]

PMID:
29239301
32.

Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Gerasimov ES, Gasparyan AA, Kaurov I, Tichý B, Logacheva MD, Kolesnikov AA, Lukeš J, Yurchenko V, Zimmer SL, Flegontov P.

Nucleic Acids Res. 2018 Jan 25;46(2):765-781. doi: 10.1093/nar/gkx1202.

33.

Hydrogen mobility in the lightest reversible metal hydride, LiBeH3.

Mamontov E, Kolesnikov AI, Sampath S, Yarger JL.

Sci Rep. 2017 Nov 24;7(1):16244. doi: 10.1038/s41598-017-16504-0.

34.

Statistical description of co-nonsolvency suppression at high pressures.

Budkov YA, Kolesnikov AL.

Soft Matter. 2017 Nov 22;13(45):8362-8367. doi: 10.1039/c7sm01637a.

PMID:
29116278
35.

Dephosphorylation by protein phosphatase 2A regulates visual pigment regeneration and the dark adaptation of mammalian photoreceptors.

Kolesnikov AV, Orban T, Jin H, Brooks C, Hofmann L, Dong Z, Sokolov M, Palczewski K, Kefalov VJ.

Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9675-E9684. doi: 10.1073/pnas.1712405114. Epub 2017 Oct 23.

36.

Self-Healing Polymeric Composite Material Design, Failure Analysis and Future Outlook: A Review.

Mphahlele K, Ray SS, Kolesnikov A.

Polymers (Basel). 2017 Oct 20;9(10). pii: E535. doi: 10.3390/polym9100535. Review.

37.

Characterizing the in vitro species differences in N-glucuronidation of a potent pan-PIM inhibitor GNE-924 containing a 3,5-substituted 6-azaindazole.

Lin M, Ly J, Takahashi R, Chen J, Deese A, Robinson SJ, Kolesnikov A, Wong S, Wang X, Chang JH.

Xenobiotica. 2018 Oct;48(10):1021-1027. doi: 10.1080/00498254.2017.1373312. Epub 2017 Sep 29.

PMID:
28845725
38.

Evolution of inhibitor-resistant natural mutant forms of HIV-1 protease probed by pre-steady state kinetic analysis.

Zakharova MY, Kuznetsova AA, Kaliberda EN, Dronina MA, Kolesnikov AV, Kozyr AV, Smirnov IV, Rumsh LD, Fedorova OS, Knorre DG, Gabibov AG, Kuznetsov NA.

Biochimie. 2017 Nov;142:125-134. doi: 10.1016/j.biochi.2017.08.014. Epub 2017 Aug 24.

PMID:
28843613
39.

Characterization of OT4-1 Alloy by Multi-Dome Forming Test.

Zakhariev I, Aksenov S, Kotov A, Kolesnikov A.

Materials (Basel). 2017 Aug 3;10(8). pii: E899. doi: 10.3390/ma10080899.

40.

Raman and IR Spectroscopy Studies on Propane at Pressures of Up to 40 GPa.

Kudryavtsev D, Serovaiskii A, Mukhina E, Kolesnikov A, Gasharova B, Kutcherov V, Dubrovinsky L.

J Phys Chem A. 2017 Aug 17;121(32):6004-6011. doi: 10.1021/acs.jpca.7b05492. Epub 2017 Aug 7.

PMID:
28737910
41.

The lower pT limit of deep hydrocarbon synthesis by CaCO3 aqueous reduction.

Mukhina E, Kolesnikov A, Kutcherov V.

Sci Rep. 2017 Jul 18;7(1):5749. doi: 10.1038/s41598-017-06155-6.

42.

Multiple Isoforms of Nesprin1 Are Integral Components of Ciliary Rootlets.

Potter C, Zhu W, Razafsky D, Ruzycki P, Kolesnikov AV, Doggett T, Kefalov VJ, Betleja E, Mahjoub MR, Hodzic D.

Curr Biol. 2017 Jul 10;27(13):2014-2022.e6. doi: 10.1016/j.cub.2017.05.066. Epub 2017 Jun 15.

43.

Minicircle Kinetoplast Genome of Insect Trypanosomatid Leptomonas pyrrhocoris.

Gerasimov ES, Gasparyan AA, Litus IA, Logacheva MD, Kolesnikov AA.

Biochemistry (Mosc). 2017 May;82(5):572-578. doi: 10.1134/S0006297917050054.

PMID:
28601067
44.

Correction: Statistical theory of polarizable target compound impregnation into a polymer coil under the influence of an electric field.

Kolesnikov AL, Budkov YA, Basharova EA, Kiselev MG.

Soft Matter. 2017 Jun 21;13(24):4401. doi: 10.1039/c7sm90091k.

PMID:
28590488
45.

Immune response to Vi-antigen of Salmonella typhi is dependent on introduction of positive charge and shape of charged group into polysaccharide.

Kolesnikov AV, Kozyr AV, Ryabko AK, Shemyakin IG, Dyatlov IA.

Dokl Biochem Biophys. 2017 Mar;473(1):141-144. doi: 10.1134/S1607672917020132. Epub 2017 May 17.

PMID:
28510135
46.

Statistical theory of polarizable target compound impregnation into a polymer coil under the influence of an electric field.

Kolesnikov AL, Budkov YA, Basharova EA, Kiselev MG.

Soft Matter. 2017 Jun 21;13(24):4363-4369. doi: 10.1039/c7sm00417f. Erratum in: Soft Matter. 2017 Jun 21;13(24):4401.

PMID:
28489109
47.

Discovery of 5-Azaindazole (GNE-955) as a Potent Pan-Pim Inhibitor with Optimized Bioavailability.

Wang X, Kolesnikov A, Tay S, Chan G, Chao Q, Do S, Drummond J, Ebens AJ, Liu N, Ly J, Harstad E, Hu H, Moffat J, Munugalavadla V, Murray J, Slaga D, Tsui V, Volgraf M, Wallweber H, Chang JH.

J Med Chem. 2017 May 25;60(10):4458-4473. doi: 10.1021/acs.jmedchem.7b00418. Epub 2017 May 5.

PMID:
28445037
48.

Vortex dynamics and frequency splitting in vertically coupled nanomagnets.

Stebliy ME, Jain S, Kolesnikov AG, Ognev AV, Samardak AS, Davydenko AV, Sukovatitcina EV, Chebotkevich LA, Ding J, Pearson J, Khovaylo V, Novosad V.

Sci Rep. 2017 Apr 25;7(1):1127. doi: 10.1038/s41598-017-01222-4.

49.

Polymer chain collapse induced by many-body dipole correlations.

Budkov YA, Kalikin NN, Kolesnikov AL.

Eur Phys J E Soft Matter. 2017 Apr;40(4):47. doi: 10.1140/epje/i2017-11533-5. Epub 2017 Apr 18.

PMID:
28417323
50.

The Mitochondrial Genome. The Nucleoid.

Kolesnikov AA.

Biochemistry (Mosc). 2016 Oct;81(10):1057-1065. Review.

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