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Protein Paucimannosylation is an Enriched N-glycosylation Signature of Human Cancers.

Chatterjee S, Lee LY, Kawahara R, Abrahams JL, Adamczyk B, Anugraham M, Ashwood C, Sumer-Bayraktar Z, Briggs MT, Chik JHL, Everest-Dass A, Förster S, Hinneburg H, Leite KRM, Loke I, Möginger U, Moh ESX, Nakano M, Recuero S, Sethi MK, Srougi M, Stavenhagen K, Venkatakrishnan V, Wongtrakul-Kish K, Diestel S, Hoffmann P, Karlsson NG, Kolarich D, Molloy MP, Muders MH, Oehler MK, Packer NH, Palmisano G, Thaysen-Andersen M.

Proteomics. 2019 Aug 16:e1900010. doi: 10.1002/pmic.201900010. [Epub ahead of print]


Towards a standardized bioinformatics infrastructure for N- and O-glycomics.

Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG.

Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x. Review.


Improved strategy for large scale isolation of sialylglycopeptide (SGP) from egg yolk powder.

Alagesan K, Kolarich D.

MethodsX. 2019 Apr 9;6:773-778. doi: 10.1016/j.mex.2019.04.007. eCollection 2019.


The minimum information required for a glycomics experiment (MIRAGE) project: LC guidelines.

Campbell MP, Abrahams JL, Rapp E, Struwe WB, Costello CE, Novotny M, Ranzinger R, York WS, Kolarich D, Rudd PM, Kettner C.

Glycobiology. 2019 May 1;29(5):349-354. doi: 10.1093/glycob/cwz009.


GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.

Alocci D, Mariethoz J, Gastaldello A, Gasteiger E, Karlsson NG, Kolarich D, Packer NH, Lisacek F.

J Proteome Res. 2019 Feb 1;18(2):664-677. doi: 10.1021/acs.jproteome.8b00766. Epub 2019 Jan 15.


Isomeric Separation and Characterisation of Glycoconjugates.

Alagesan K, Everest-Dass A, Kolarich D.

Adv Exp Med Biol. 2018;1104:77-99. doi: 10.1007/978-981-13-2158-0_5. Review.


A General Protein O-Glycosylation Gene Cluster Encodes the Species-Specific Glycan of the Oral Pathogen Tannerella forsythia: O-Glycan Biosynthesis and Immunological Implications.

Tomek MB, Maresch D, Windwarder M, Friedrich V, Janesch B, Fuchs K, Neumann L, Nimeth I, Zwickl NF, Dohm JC, Everest-Dass A, Kolarich D, Himmelbauer H, Altmann F, Schäffer C.

Front Microbiol. 2018 Aug 28;9:2008. doi: 10.3389/fmicb.2018.02008. eCollection 2018.


Human Mast Cell Tryptase Is a Potential Treatment for Snakebite Envenoming Across Multiple Snake Species.

Anderson E, Stavenhagen K, Kolarich D, Sommerhoff CP, Maurer M, Metz M.

Front Immunol. 2018 Jul 9;9:1532. doi: 10.3389/fimmu.2018.01532. eCollection 2018.


Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma.

Möginger U, Grunewald S, Hennig R, Kuo CW, Schirmeister F, Voth H, Rapp E, Khoo KH, Seeberger PH, Simon JC, Kolarich D.

Front Oncol. 2018 Mar 21;8:70. doi: 10.3389/fonc.2018.00070. eCollection 2018.


Flagellin Glycoproteomics of the Periodontitis Associated Pathogen Selenomonas sputigena Reveals Previously Not Described O-glycans and Rhamnose Fragment Rearrangement Occurring on the Glycopeptides.

Rath CB, Schirmeister F, Figl R, Seeberger PH, Schäffer C, Kolarich D.

Mol Cell Proteomics. 2018 Apr;17(4):721-736. doi: 10.1074/mcp.RA117.000394. Epub 2018 Jan 16.


Exploring the Glycans of Euglena gracilis.

O'Neill EC, Kuhaudomlarp S, Rejzek M, Fangel JU, Alagesan K, Kolarich D, Willats WGT, Field RA.

Biology (Basel). 2017 Dec 15;6(4). pii: E45. doi: 10.3390/biology6040045.


PepSweetener: A Web-Based Tool to Support Manual Annotation of Intact Glycopeptide MS Spectra.

Domagalski MJ, Alocci D, Almeida A, Kolarich D, Lisacek F.

Proteomics Clin Appl. 2018 Sep;12(5):e1700069. doi: 10.1002/prca.201700069. Epub 2017 Oct 30.


Unlocking Cancer Glycomes from Histopathological Formalin-fixed and Paraffin-embedded (FFPE) Tissue Microdissections.

Hinneburg H, Korać P, Schirmeister F, Gasparov S, Seeberger PH, Zoldoš V, Kolarich D.

Mol Cell Proteomics. 2017 Apr;16(4):524-536. doi: 10.1074/mcp.M116.062414. Epub 2017 Jan 25.


The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, Packer NH, Ranzinger R, Rapp E, Rudd PM, Struwe WB, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C, Paulson JC, Feizi T, Smith DF.

Glycobiology. 2016 Nov 22. [Epub ahead of print]


It is all about the solvent: on the importance of the mobile phase for ZIC-HILIC glycopeptide enrichment.

Alagesan K, Khilji SK, Kolarich D.

Anal Bioanal Chem. 2017 Jan;409(2):529-538. doi: 10.1007/s00216-016-0051-6. Epub 2016 Dec 1.


Detection and first characterization of an uncommon haptoglobin in porcine saliva of pigs with rectal prolapse by using boronic acid sample enrichment.

Gutiérrez AM, Miller I, Kolarich D, Hummel K, Nöbauer K, Razzazi-Fazeli E.

Animal. 2017 May;11(5):845-853. doi: 10.1017/S1751731116002159. Epub 2016 Nov 10.


N- and O-Glycomics from Minor Amounts of Formalin-Fixed, Paraffin-Embedded Tissue Samples.

Hinneburg H, Schirmeister F, Korać P, Kolarich D.

Methods Mol Biol. 2017;1503:131-145.


Site-Specific N- and O-Glycopeptide Analysis Using an Integrated C18-PGC-LC-ESI-QTOF-MS/MS Approach.

Stavenhagen K, Hinneburg H, Kolarich D, Wuhrer M.

Methods Mol Biol. 2017;1503:109-119.


The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C.

Glycobiology. 2016 Sep;26(9):907-910. Epub 2016 Sep 21.


Blood group antigen expression is involved in C. albicans interaction with buccal epithelial cells.

Everest-Dass AV, Kolarich D, Pascovici D, Packer NH.

Glycoconj J. 2017 Feb;34(1):31-50. doi: 10.1007/s10719-016-9726-7. Epub 2016 Sep 17.


Glycomics & Glycoproteomics in Glycoconjugate journal.

Kolarich D, Wuhrer M.

Glycoconj J. 2016 Jun;33(3):259-60. doi: 10.1007/s10719-016-9674-2. No abstract available.


Emerging roles of protein mannosylation in inflammation and infection.

Loke I, Kolarich D, Packer NH, Thaysen-Andersen M.

Mol Aspects Med. 2016 Oct;51:31-55. doi: 10.1016/j.mam.2016.04.004. Epub 2016 Apr 13. Review.


Glycomic and sialoproteomic data of gastric carcinoma cells overexpressing ST3GAL4.

Mereiter S, Magalhães A, Adamczyk B, Jin C, Almeida A, Drici L, Ibáñez-Vea M, Larsen MR, Kolarich D, Karlsson NG, Reis CA.

Data Brief. 2016 Mar 14;7:814-33. doi: 10.1016/j.dib.2016.03.022. eCollection 2016 Jun.


The promise of protein glycosylation for personalised medicine.

Almeida A, Kolarich D.

Biochim Biophys Acta. 2016 Aug;1860(8):1583-95. doi: 10.1016/j.bbagen.2016.03.012. Epub 2016 Mar 15. Review.


Distinguishing N-acetylneuraminic acid linkage isomers on glycopeptides by ion mobility-mass spectrometry.

Hinneburg H, Hofmann J, Struwe WB, Thader A, Altmann F, Varón Silva D, Seeberger PH, Pagel K, Kolarich D.

Chem Commun (Camb). 2016 Mar 21;52(23):4381-4. doi: 10.1039/c6cc01114d.


Cross Reactive Material 197 glycoconjugate vaccines contain privileged conjugation sites.

Möginger U, Resemann A, Martin CE, Parameswarappa S, Govindan S, Wamhoff EC, Broecker F, Suckau D, Pereira CL, Anish C, Seeberger PH, Kolarich D.

Sci Rep. 2016 Feb 4;6:20488. doi: 10.1038/srep20488.


The Art of Destruction: Optimizing Collision Energies in Quadrupole-Time of Flight (Q-TOF) Instruments for Glycopeptide-Based Glycoproteomics.

Hinneburg H, Stavenhagen K, Schweiger-Hufnagel U, Pengelley S, Jabs W, Seeberger PH, Silva DV, Wuhrer M, Kolarich D.

J Am Soc Mass Spectrom. 2016 Mar;27(3):507-19. doi: 10.1007/s13361-015-1308-6. Epub 2016 Jan 4.


Glycomic analysis of gastric carcinoma cells discloses glycans as modulators of RON receptor tyrosine kinase activation in cancer.

Mereiter S, Magalhães A, Adamczyk B, Jin C, Almeida A, Drici L, Ibáñez-Vea M, Gomes C, Ferreira JA, Afonso LP, Santos LL, Larsen MR, Kolarich D, Karlsson NG, Reis CA.

Biochim Biophys Acta. 2016 Aug;1860(8):1795-808. doi: 10.1016/j.bbagen.2015.12.016. Epub 2015 Dec 22.


An Anti-EGFR IgA That Displays Improved Pharmacokinetics and Myeloid Effector Cell Engagement In Vivo.

Lohse S, Meyer S, Meulenbroek LA, Jansen JH, Nederend M, Kretschmer A, Klausz K, Möginger U, Derer S, Rösner T, Kellner C, Schewe D, Sondermann P, Tiwari S, Kolarich D, Peipp M, Leusen JH, Valerius T.

Cancer Res. 2016 Jan 15;76(2):403-17. doi: 10.1158/0008-5472.CAN-15-1232. Epub 2015 Dec 3.


Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines : HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study.

Ito H, Kaji H, Togayachi A, Azadi P, Ishihara M, Geyer R, Galuska C, Geyer H, Kakehi K, Kinoshita M, Karlsson NG, Jin C, Kato K, Yagi H, Kondo S, Kawasaki N, Hashii N, Kolarich D, Stavenhagen K, Packer NH, Thaysen-Andersen M, Nakano M, Taniguchi N, Kurimoto A, Wada Y, Tajiri M, Yang P, Cao W, Li H, Rudd PM, Narimatsu H.

Glycoconj J. 2016 Jun;33(3):405-415. doi: 10.1007/s10719-015-9625-3. Epub 2015 Oct 28.


Flagellin glycosylation in Paenibacillus alvei CCM 2051T.

Janesch B, Schirmeister F, Maresch D, Altmann F, Messner P, Kolarich D, Schäffer C.

Glycobiology. 2016 Jan;26(1):74-87. doi: 10.1093/glycob/cwv087. Epub 2015 Sep 24.


Preventing E-cadherin aberrant N-glycosylation at Asn-554 improves its critical function in gastric cancer.

Carvalho S, Catarino TA, Dias AM, Kato M, Almeida A, Hessling B, Figueiredo J, Gärtner F, Sanches JM, Ruppert T, Miyoshi E, Pierce M, Carneiro F, Kolarich D, Seruca R, Yamaguchi Y, Taniguchi N, Reis CA, Pinho SS.

Oncogene. 2016 Mar 31;35(13):1619-31. doi: 10.1038/onc.2015.225. Epub 2015 Jul 20.


Isomer-Specific Analysis of Released N-Glycans by LC-ESI MS/MS with Porous Graphitized Carbon.

Kolarich D, Windwarder M, Alagesan K, Altmann F.

Methods Mol Biol. 2015;1321:427-35. doi: 10.1007/978-1-4939-2760-9_29.


Clinical Glycomics Employing Graphitized Carbon Liquid Chromatography-Mass Spectrometry.

Stavenhagen K, Kolarich D, Wuhrer M.

Chromatographia. 2015;78(5-6):307-320. Epub 2014 Dec 9. Review.


The role of glycosylation in IBD.

Theodoratou E, Campbell H, Ventham NT, Kolarich D, Pučić-Baković M, Zoldoš V, Fernandes D, Pemberton IK, Rudan I, Kennedy NA, Wuhrer M, Nimmo E, Annese V, McGovern DP, Satsangi J, Lauc G.

Nat Rev Gastroenterol Hepatol. 2014 Oct;11(10):588-600. doi: 10.1038/nrgastro.2014.78. Epub 2014 Jun 10. Review.


MIRAGE: the minimum information required for a glycomics experiment.

York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, Kettner C.

Glycobiology. 2014 May;24(5):402-6. doi: 10.1093/glycob/cwu018. Epub 2014 Mar 20.


Proteomics on porcine haptoglobin and IgG/IgA show protein species distribution and glycosylation pattern to remain similar in PCV2-SD infection.

Marco-Ramell A, Miller I, Nöbauer K, Möginger U, Segalés J, Razzazi-Fazeli E, Kolarich D, Bassols A.

J Proteomics. 2014 Apr 14;101:205-16. doi: 10.1016/j.jprot.2014.02.018. Epub 2014 Feb 24.


A study on Nim expression in Bacteroides fragilis.

Leitsch D, Sóki J, Kolarich D, Urbán E, Nagy E.

Microbiology. 2014 Mar;160(Pt 3):616-22. doi: 10.1099/mic.0.074807-0. Epub 2014 Jan 21.


Trichomonas vaginalis flavin reductase 1 and its role in metronidazole resistance.

Leitsch D, Janssen BD, Kolarich D, Johnson PJ, Duchêne M.

Mol Microbiol. 2014 Jan;91(1):198-208. doi: 10.1111/mmi.12455. Epub 2013 Nov 20.


Characterization and downstream mannose phosphorylation of human recombinant α-L-iduronidase produced in Arabidopsis complex glycan-deficient (cgl) seeds.

He X, Pierce O, Haselhorst T, von Itzstein M, Kolarich D, Packer NH, Gloster TM, Vocadlo DJ, Qian Y, Brooks D, Kermode AR.

Plant Biotechnol J. 2013 Dec;11(9):1034-43. doi: 10.1111/pbi.12096. Epub 2013 Jul 31.


Bioanalysis Young Investigator Award 2013.

Saxena N, Kolarich D, Vivekanand Kulkarni M, Jankevics A, Benton C.

Bioanalysis. 2013 Jun;5(12):1479-84. doi: 10.4155/bio.13.97. No abstract available.


Quantitative mapping of glycoprotein micro-heterogeneity and macro-heterogeneity: an evaluation of mass spectrometry signal strengths using synthetic peptides and glycopeptides.

Stavenhagen K, Hinneburg H, Thaysen-Andersen M, Hartmann L, Varón Silva D, Fuchser J, Kaspar S, Rapp E, Seeberger PH, Kolarich D.

J Mass Spectrom. 2013 Jun;48(6):i. doi: 10.1002/jms.3189.


Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012.

Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J, Aguilan J, Alley WR, Altmann F, Ball LE, Basumallick L, Bazemore-Walker CR, Behnken H, Blank MA, Brown KJ, Bunz SC, Cairo CW, Cipollo JF, Daneshfar R, Desaire H, Drake RR, Go EP, Goldman R, Gruber C, Halim A, Hathout Y, Hensbergen PJ, Horn DM, Hurum D, Jabs W, Larson G, Ly M, Mann BF, Marx K, Mechref Y, Meyer B, Möginger U, Neusüβ C, Nilsson J, Novotny MV, Nyalwidhe JO, Packer NH, Pompach P, Reiz B, Resemann A, Rohrer JS, Ruthenbeck A, Sanda M, Schulz JM, Schweiger-Hufnagel U, Sihlbom C, Song E, Staples GO, Suckau D, Tang H, Thaysen-Andersen M, Viner RI, An Y, Valmu L, Wada Y, Watson M, Windwarder M, Whittal R, Wuhrer M, Zhu Y, Zou C.

Mol Cell Proteomics. 2013 Oct;12(10):2935-51. doi: 10.1074/mcp.M113.030643. Epub 2013 Jun 13.


Quantitative mapping of glycoprotein micro-heterogeneity and macro-heterogeneity: an evaluation of mass spectrometry signal strengths using synthetic peptides and glycopeptides.

Stavenhagen K, Hinneburg H, Thaysen-Andersen M, Hartmann L, Varón Silva D, Fuchser J, Kaspar S, Rapp E, Seeberger PH, Kolarich D.

J Mass Spectrom. 2013 Jun;48(6):627-39. doi: 10.1002/jms.3210.


Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository.

Campbell MP, Nguyen-Khuong T, Hayes CA, Flowers SA, Alagesan K, Kolarich D, Packer NH, Karlsson NG.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):108-16. doi: 10.1016/j.bbapap.2013.04.018. Epub 2013 Apr 25.


Structural feature ions for distinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS.

Everest-Dass AV, Abrahams JL, Kolarich D, Packer NH, Campbell MP.

J Am Soc Mass Spectrom. 2013 Jun;24(6):895-906. doi: 10.1007/s13361-013-0610-4. Epub 2013 Apr 20.


Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.

Everest-Dass AV, Kolarich D, Campbell MP, Packer NH.

Rapid Commun Mass Spectrom. 2013 May 15;27(9):931-9. doi: 10.1002/rcm.6527.


The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data.

Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS.

Mol Cell Proteomics. 2013 Apr;12(4):991-5. doi: 10.1074/mcp.O112.026492. Epub 2013 Feb 1.


Production of glycosylated soluble amyloid precursor protein alpha (sAPPalpha) in Leishmania tarentolae.

Klatt S, Rohe M, Alagesan K, Kolarich D, Konthur Z, Hartl D.

J Proteome Res. 2013 Jan 4;12(1):396-403. doi: 10.1021/pr300693f. Epub 2012 Dec 21.


Characterization of N- and O-linked glycosylation changes in milk of the tammar wallaby (Macropus eugenii) over lactation.

Wongtrakul-Kish K, Kolarich D, Pascovici D, Joss JL, Deane E, Packer NH.

Glycoconj J. 2013 Jul;30(5):523-36. doi: 10.1007/s10719-012-9452-8. Epub 2012 Oct 10.


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