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Role of RNF213 p.4810K variant in the development of intracranial arterial disease in patients treated with nilotinib.

Uemura M, Kanazawa M, Yamagishi T, Nagai T, Takahashi M, Koide S, Tada M, Shimbo J, Isami A, Makino K, Masuko M, Nikkuni K, Okamoto K, Igarashi S, Morita K, Onodera O.

J Neurol Sci. 2020 Jan 15;408:116577. doi: 10.1016/j.jns.2019.116577. Epub 2019 Nov 9. No abstract available.


Bmi1 counteracts hematopoietic stem cell aging by repressing target genes and enforcing the stem cell gene signature.

Nitta E, Itokawa N, Yabata S, Koide S, Hou LB, Oshima M, Aoyama K, Saraya A, Iwama A.

Biochem Biophys Res Commun. 2020 Jan 15;521(3):612-619. doi: 10.1016/j.bbrc.2019.10.153. Epub 2019 Nov 1.


Akt inhibition synergizes with polycomb repressive complex 2 inhibition in the treatment of multiple myeloma.

Rizk M, Rizq O, Oshima M, Nakajima-Takagi Y, Koide S, Saraya A, Isshiki Y, Chiba T, Yamazaki S, Ma A, Jin J, Iwama A, Mimura N.

Cancer Sci. 2019 Dec;110(12):3695-3707. doi: 10.1111/cas.14207. Epub 2019 Oct 22.


Predominance of methicillin-resistant Staphylococcus aureus SCCmec type II-CC5 and SCCmec type IV-CC1/CC8 among companion animal clinical isolates in Japan: Findings from phylogenetic comparison with human clinical isolates.

Taniguchi Y, Koide S, Maeyama Y, Tamai K, Hayashi W, Tanaka H, Iimura M, Suzuki M, Nagano Y, Arakawa Y, Nagano N.

J Glob Antimicrob Resist. 2019 Aug 28;20:253-259. doi: 10.1016/j.jgar.2019.08.016. [Epub ahead of print]


BRAF inhibitors promote intermediate BRAF(V600E) conformations and binary interactions with activated RAS.

Röck R, Mayrhofer JE, Torres-Quesada O, Enzler F, Raffeiner A, Raffeiner P, Feichtner A, Huber RG, Koide S, Taylor SS, Troppmair J, Stefan E.

Sci Adv. 2019 Aug 14;5(8):eaav8463. doi: 10.1126/sciadv.aav8463. eCollection 2019 Aug.


Prediction model for cardiovascular events or all-cause mortality in incident dialysis patients.

Inaguma D, Morii D, Kabata D, Yoshida H, Tanaka A, Koshi-Ito E, Takahashi K, Hayashi H, Koide S, Tsuboi N, Hasegawa M, Shintani A, Yuzawa Y.

PLoS One. 2019 Aug 22;14(8):e0221352. doi: 10.1371/journal.pone.0221352. eCollection 2019.


Repurposing off-the-shelf antihelix antibodies for enabling structural biology.

Koide S.

Proc Natl Acad Sci U S A. 2019 Sep 3;116(36):17611-17613. doi: 10.1073/pnas.1912643116. Epub 2019 Aug 19. No abstract available.


Bmi1 restricts the adipogenic differentiation of bone marrow stromal cells to maintain the integrity of the hematopoietic stem cell niche.

Kato Y, Hou LB, Miyagi S, Nitta E, Aoyama K, Shinoda D, Yamazaki S, Kuribayashi W, Isshiki Y, Koide S, Si S, Saraya A, Matsuzaki Y, van Lohuizen M, Iwama A.

Exp Hematol. 2019 Aug;76:24-37. doi: 10.1016/j.exphem.2019.07.006. Epub 2019 Aug 11.


Oral ferrous citrate or ferrous sulfate use during predialysis may reduce serum phosphate level at dialysis initiation

Koide S, Inaguma D, Koshi-Ito E, Takahashi K, Hayashi H, Tsuboi N, Hasegawa M, Yuzawa Y.

Clin Nephrol. 2019 Oct;92(4):180-189. doi: 10.5414/CN109610.


Diffuse pollution monitoring and modelling of small urban watershed in Brazil Cerrado.

Tsuji TM, Costa MEL, Koide S.

Water Sci Technol. 2019 May;79(10):1912-1921. doi: 10.2166/wst.2019.190.


Delayed primary retention suture for inset of vascularized submental lymph node flap for lower extremity lymphedema.

Koide S, Lin CY, Cheng MH.

J Surg Oncol. 2020 Jan;121(1):138-143. doi: 10.1002/jso.25520. Epub 2019 Jul 5.


Long-term outcome of lower extremity lymphedema treated with vascularized lymph node flap transfer with or without venous complications.

Koide S, Lin CY, Chen C, Cheng MH.

J Surg Oncol. 2020 Jan;121(1):129-137. doi: 10.1002/jso.25602. Epub 2019 Jun 27.


Allosteric modulation of a human protein kinase with monobodies.

Zorba A, Nguyen V, Koide A, Hoemberger M, Zheng Y, Kutter S, Kim C, Koide S, Kern D.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):13937-13942. doi: 10.1073/pnas.1906024116. Epub 2019 Jun 25.


Relationship between History of Ischemic Stroke and All-Cause Mortality in Incident Dialysis Patients.

Kojima M, Inaguma D, Koide S, Koshi-Ito E, Takahashi K, Hayashi H, Tsuboi N, Hasegawa M, Yuzawa Y.

Nephron. 2019;143(1):43-53. doi: 10.1159/000500485. Epub 2019 Jun 11.


Junctional Adhesion Molecule 2 Represents a Subset of Hematopoietic Stem Cells with Enhanced Potential for T Lymphopoiesis.

Radulovic V, van der Garde M, Koide S, Sigurdsson V, Lang S, Kaneko S, Miharada K.

Cell Rep. 2019 Jun 4;27(10):2826-2836.e5. doi: 10.1016/j.celrep.2019.05.028.


Broad-Spectrum Proteome Editing with an Engineered Bacterial Ubiquitin Ligase Mimic.

Ludwicki MB, Li J, Stephens EA, Roberts RW, Koide S, Hammond PT, DeLisa MP.

ACS Cent Sci. 2019 May 22;5(5):852-866. doi: 10.1021/acscentsci.9b00127. Epub 2019 May 10.


Genome-Wide Mapping of Bivalent Histone Modifications in Hepatic Stem/Progenitor Cells.

Kanayama K, Chiba T, Oshima M, Kanzaki H, Koide S, Saraya A, Miyagi S, Mimura N, Kusakabe Y, Saito T, Ogasawara S, Suzuki E, Ooka Y, Maruyama H, Iwama A, Kato N.

Stem Cells Int. 2019 Apr 1;2019:9789240. doi: 10.1155/2019/9789240. eCollection 2019.


Comparison Between the Internal and External Pressure Filtration Method of Cell-Free and Concentrated Ascites Reinfusion Therapy Using the Same Cancerous Ascites.

Yamada S, Hasegawa M, Nii N, Kato M, Ohashi A, Suzuki R, Komatsu M, Abe K, Hata Y, Takahashi K, Hayashi H, Koide S, Tsuboi N, Inaguma D, Yuzawa Y.

Ther Apher Dial. 2019 Jun;23(3):237-241. doi: 10.1111/1744-9987.12821.


Acquisition of gemcitabine resistance enhances angiogenesis via upregulation of IL‑8 production in pancreatic cancer.

Imafuji H, Matsuo Y, Ueda G, Omi K, Hayashi Y, Saito K, Tsuboi K, Morimoto M, Koide S, Ogawa R, Hara M, Takahashi H, Takiguchi S.

Oncol Rep. 2019 Jun;41(6):3508-3516. doi: 10.3892/or.2019.7105. Epub 2019 Apr 9.


Seq2seq Fingerprint with Byte-Pair Encoding for Predicting Changes in Protein Stability upon Single Point Mutation.

Kawano K, Koide S, Imamura C.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Apr 1. doi: 10.1109/TCBB.2019.2908641. [Epub ahead of print]


Invasive Ductal Carcinoma Arising in Mucinous Cystic Neoplasm of Pancreas: A Case Report.

Sawai H, Kurimoto M, Koide S, Kiriyama Y, Haba S, Matsuo Y, Morimoto M, Koide H, Kamiya A, Yamao K.

Am J Case Rep. 2019 Feb 24;20:242-247. doi: 10.12659/AJCR.914092.


Genetic and transcriptional landscape of plasma cells in POEMS syndrome.

Nagao Y, Mimura N, Takeda J, Yoshida K, Shiozawa Y, Oshima M, Aoyama K, Saraya A, Koide S, Rizq O, Hasegawa Y, Shiraishi Y, Chiba K, Tanaka H, Nishijima D, Isshiki Y, Kayamori K, Kawajiri-Manako C, Oshima-Hasegawa N, Tsukamoto S, Mitsukawa S, Takeda Y, Ohwada C, Takeuchi M, Iseki T, Misawa S, Miyano S, Ohara O, Yokote K, Sakaida E, Kuwabara S, Sanada M, Iwama A, Ogawa S, Nakaseko C.

Leukemia. 2019 Jul;33(7):1723-1735. doi: 10.1038/s41375-018-0348-x. Epub 2019 Jan 11.


Potential effect of selective pressure with different β-lactam molecules on the emergence of reduced susceptibility to β-lactams in group B Streptococci.

Koide S, Hayashi W, Taniguchi Y, Tanaka H, Kimura K, Nagano Y, Arakawa Y, Nagano N.

Microbiol Immunol. 2019 Feb;63(2):65-76. doi: 10.1111/1348-0421.12667. Epub 2019 Feb 4.


Progression of immunoglobulin G4-related disease to systematic lupus erythematosus after gastric cancer surgery: A case report.

Arai H, Hayashi H, Ogata S, Uto K, Saegusa J, Takahashi K, Koide S, Inaguma D, Hasegawa M, Yuzawa Y.

Medicine (Baltimore). 2018 Dec;97(51):e13545. doi: 10.1097/MD.0000000000013545.


Relationship Between Patterns in Antihypertensive Drugs Medication and Mortality in Incident Dialysis Patients: A Multicenter Prospective Cohort Study.

Fujii M, Inaguma D, Koide S, Ito E, Takahashi K, Hayashi H, Tsuboi N, Hasegawa M, Yuzawa Y.

Ther Apher Dial. 2019 Aug;23(4):353-361. doi: 10.1111/1744-9987.12778. Epub 2018 Dec 21.


Corrigendum to "Interaction of SH3P13 and DYDC1 protein: a germ cell component that regulates acrosome biogenesis during spermiogenesis" [Eur. J. Cell Biol. 88 (2009) 509-520].

Li S, Qiao Y, Di Q, Le X, Zhang L, Zhang X, Zhang C, Cheng J, Zong S, Koide SS, Miao S, Wang L.

Eur J Cell Biol. 2019 Jan;98(1):51-52. doi: 10.1016/j.ejcb.2018.11.002. Epub 2018 Nov 26. No abstract available.


Population-level transition of capsular polysaccharide types among sequence type 1 group B Streptococcus isolates with reduced penicillin susceptibility during a long-term hospital epidemic.

Nagano N, Koide S, Hayashi W, Taniguchi Y, Tanaka H, Maeyama Y, Suzuki M, Kimura K, Arakawa Y, Nagano Y.

Int J Antimicrob Agents. 2019 Mar;53(3):203-210. doi: 10.1016/j.ijantimicag.2018.11.003. Epub 2018 Nov 7.


Ezh1 Targets Bivalent Genes to Maintain Self-Renewing Stem Cells in Ezh2-Insufficient Myelodysplastic Syndrome.

Aoyama K, Oshima M, Koide S, Suzuki E, Mochizuki-Kashio M, Kato Y, Tara S, Shinoda D, Hiura N, Nakajima-Takagi Y, Sashida G, Iwama A.

iScience. 2018 Nov 30;9:161-174. doi: 10.1016/j.isci.2018.10.008. Epub 2018 Oct 15.


Bcor insufficiency promotes initiation and progression of myelodysplastic syndrome.

Tara S, Isshiki Y, Nakajima-Takagi Y, Oshima M, Aoyama K, Tanaka T, Shinoda D, Koide S, Saraya A, Miyagi S, Manabe I, Matsui H, Koseki H, Bardwell VJ, Iwama A.

Blood. 2018 Dec 6;132(23):2470-2483. doi: 10.1182/blood-2018-01-827964. Epub 2018 Sep 18.


Serum phosphate level at initiation of dialysis is associated with all-cause mortality: a multicenter prospective cohort study.

Owaki A, Inaguma D, Aoyama I, Inaba S, Koide S, Ito E, Takahashi K, Hayashi H, Hasegawa M, Yuzawa Y; AICOPP group.

Ren Fail. 2018 Nov;40(1):475-482. doi: 10.1080/0886022X.2018.1499530.


High prevalence of blaCTX-M-14 among genetically diverse Escherichia coli recovered from retail raw chicken meat portions in Japan.

Hayashi W, Ohsaki Y, Taniguchi Y, Koide S, Kawamura K, Suzuki M, Kimura K, Wachino JI, Nagano Y, Arakawa Y, Nagano N.

Int J Food Microbiol. 2018 Nov 2;284:98-104. doi: 10.1016/j.ijfoodmicro.2018.08.003. Epub 2018 Aug 5.


Ezh2 loss propagates hypermethylation at T cell differentiation-regulating genes to promote leukemic transformation.

Wang C, Oshima M, Sato D, Matsui H, Kubota S, Aoyama K, Nakajima-Takagi Y, Koide S, Matsubayashi J, Mochizuki-Kashio M, Nakano-Yokomizo T, Bai J, Nagao T, Kanai A, Iwama A, Sashida G.

J Clin Invest. 2018 Aug 31;128(9):3872-3886. doi: 10.1172/JCI94645. Epub 2018 Aug 6.


Facile target validation in an animal model with intracellularly expressed monobodies.

Gupta A, Xu J, Lee S, Tsai ST, Zhou B, Kurosawa K, Werner MS, Koide A, Ruthenburg AJ, Dou Y, Koide S.

Nat Chem Biol. 2018 Sep;14(9):895-900. doi: 10.1038/s41589-018-0099-z. Epub 2018 Jul 16.


A CLC-type F-/H+ antiporter in ion-swapped conformations.

Last NB, Stockbridge RB, Wilson AE, Shane T, Kolmakova-Partensky L, Koide A, Koide S, Miller C.

Nat Struct Mol Biol. 2018 Jul;25(7):601-606. doi: 10.1038/s41594-018-0082-0. Epub 2018 Jun 25.


Impact of statin-ezetimibe combination on coronary atheroma plaque in patients with and without chronic kidney disease - Sub-analysis of PRECISE-IVUS trial.

Fujisue K, Nagamatsu S, Shimomura H, Yamashita T, Nakao K, Nakamura S, Ishihara M, Matsui K, Yamamoto N, Koide S, Matsumura T, Fujimoto K, Tsunoda R, Morikami Y, Matsuyama K, Oshima S, Sakamoto K, Izumiya Y, Kaikita K, Hokimoto S, Ogawa H, Tsujita K.

Int J Cardiol. 2018 Oct 1;268:23-26. doi: 10.1016/j.ijcard.2018.04.051. Epub 2018 Jun 18.


Impact of high mortality in incident dialysis patients due to hypertensive nephrosclerosis: a multicenter prospective cohort study in Aichi, Japan.

Inaguma D, Ito E, Takahashi K, Hayashi H, Koide S, Hasegawa M, Yuzawa Y; AICOPP Group.

Clin Exp Nephrol. 2018 Dec;22(6):1360-1370. doi: 10.1007/s10157-018-1592-0. Epub 2018 Jun 7.


Monobody-Mediated Alteration of Lipase Substrate Specificity.

Tanaka SI, Takahashi T, Koide A, Iwamoto R, Koikeda S, Koide S.

ACS Chem Biol. 2018 Jun 15;13(6):1487-1492. doi: 10.1021/acschembio.8b00384. Epub 2018 May 18.


Next-generation antibodies for post-translational modifications.

Hattori T, Koide S.

Curr Opin Struct Biol. 2018 Aug;51:141-148. doi: 10.1016/ Epub 2018 May 10. Review.


Effect of combined vitamin D receptor activator and lanthanum carbonate on serum fibroblast growth factor 23 level in predialysis patients (CVD-LAF study): design and method.

Ito E, Inaguma D, Koide S, Takahashi K, Hayashi H, Hasegawa M, Yuzawa Y.

Clin Exp Nephrol. 2018 Dec;22(6):1309-1314. doi: 10.1007/s10157-018-1584-0. Epub 2018 May 10.


Hematopoietic insults damage bone marrow niche by activating p53 in vascular endothelial cells.

Si S, Nakajima-Takagi Y, Iga T, Tsuji M, Hou L, Oshima M, Koide S, Saraya A, Yamazaki S, Takubo K, Kubota Y, Minamino T, Iwama A.

Exp Hematol. 2018 Jul;63:41-51.e1. doi: 10.1016/j.exphem.2018.04.006. Epub 2018 Apr 27.


An Overlapping Region between the Two Terminal Folding Units of the Outer Surface Protein A (OspA) Controls Its Folding Behavior.

Makabe K, Nakamura T, Dhar D, Ikura T, Koide S, Kuwajima K.

J Mol Biol. 2018 Jun 8;430(12):1799-1813. doi: 10.1016/j.jmb.2018.04.025. Epub 2018 Apr 27.


Aortic stenosis is a risk factor for all-cause mortality in patients on dialysis: a multicenter prospective cohort analysis.

Inaguma D, Sasakawa Y, Suzuki N, Ito E, Takahashi K, Hayashi H, Koide S, Hasegawa M, Yuzawa Y; Tokai Aortic Stenosis in Dialysis Patients Cohort Study Group.

BMC Nephrol. 2018 Apr 3;19(1):80. doi: 10.1186/s12882-018-0877-6.


Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme.

Zhang Z, Liang WG, Bailey LJ, Tan YZ, Wei H, Wang A, Farcasanu M, Woods VA, McCord LA, Lee D, Shang W, Deprez-Poulain R, Deprez B, Liu DR, Koide A, Koide S, Kossiakoff AA, Li S, Carragher B, Potter CS, Tang WJ.

Elife. 2018 Mar 29;7. pii: e33572. doi: 10.7554/eLife.33572.


Muscle hypertrophy following blood flow-restricted, low-force isometric electrical stimulation in rat tibialis anterior: role for muscle hypoxia.

Nakajima T, Koide S, Yasuda T, Hasegawa T, Yamasoba T, Obi S, Toyoda S, Nakamura F, Inoue T, Poole DC, Kano Y.

J Appl Physiol (1985). 2018 Jul 1;125(1):134-145. doi: 10.1152/japplphysiol.00972.2017. Epub 2018 Mar 22.


Prevalence of ESBL/AmpC genes and specific clones among the third-generation cephalosporin-resistant Enterobacteriaceae from canine and feline clinical specimens in Japan.

Maeyama Y, Taniguchi Y, Hayashi W, Ohsaki Y, Osaka S, Koide S, Tamai K, Nagano Y, Arakawa Y, Nagano N.

Vet Microbiol. 2018 Mar;216:183-189. doi: 10.1016/j.vetmic.2018.02.020. Epub 2018 Feb 16.


Genetic shifts in methicillin-resistant Staphylococcus aureus epidemic clones and toxin gene profiles in Japan: comparative analysis among pre-epidemic, epidemic and post-epidemic phases.

Osaka S, Okuzumi K, Koide S, Tamai K, Sato T, Tanimoto K, Tomita H, Suzuki M, Nagano Y, Shibayama K, Arakawa Y, Nagano N.

J Med Microbiol. 2018 Mar;67(3):392-399. doi: 10.1099/jmm.0.000687. Epub 2018 Feb 2.


First report of colistin resistance in OXA-181 carbapenemase-producing Klebsiella pneumoniae ST3130 in Japan.

Hayashi W, Togashi M, Taniguchi Y, Koide S, Nagano Y, Nagano N.

J Glob Antimicrob Resist. 2018 Mar;12:179-180. doi: 10.1016/j.jgar.2018.01.020. Epub 2018 Feb 4. No abstract available.


Atomic structure of the eukaryotic intramembrane RAS methyltransferase ICMT.

Diver MM, Pedi L, Koide A, Koide S, Long SB.

Nature. 2018 Jan 25;553(7689):526-529. doi: 10.1038/nature25439. Epub 2018 Jan 17.


Hmga2 collaborates with JAK2V617F in the development of myeloproliferative neoplasms.

Ueda K, Ikeda K, Ikezoe T, Harada-Shirado K, Ogawa K, Hashimoto Y, Sano T, Ohkawara H, Kimura S, Shichishima-Nakamura A, Nakamura Y, Shikama Y, Mori T, Mason PJ, Bessler M, Morishita S, Komatsu N, Shide K, Shimoda K, Koide S, Aoyama K, Oshima M, Iwama A, Takeishi Y.

Blood Adv. 2017 Jun 14;1(15):1001-1015. doi: 10.1182/bloodadvances.2017004457. eCollection 2017 Jun 27.

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