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Items: 1 to 50 of 254

1.

International Society of Cardiovascular Infectious Diseases Guidelines for the Diagnosis, Treatment and Prevention of Disseminated Mycobacterium chimaera Infection Following Cardiac Surgery with Cardiopulmonary Bypass.

Hasse B, Hannan M, Keller PM, Maurer FP, Sommerstein R, Mertz D, Wagner D, Fernández-Hidalgo N, Nomura J, Manfrin V, Bettex D, Conte AH, Durante-Mangoni E, Hing-Cheung Tang T, Stuart RL, Lundgren J, Gordon S, Jarashow MC, Schreiber PW, Niemann S, Kohl TA, Daley C, Stewardson AJ, Whitener CJ, Perkins K, Plachouras D, Lamagni T, Chand M, Freiberger T, Zweifel S, Sander P, Schulthess B, Scriven J, Sax H, van Ingen J, Mestres CA, Diekema D, Brown-Elliott BA, Wallace RJ Jr, Baddour LM, Miro JM, Hoen B; M. chimaera ISCVID investigators; Infectious Diseases specialists; Hospital epidemiologists; Microbiologists and molecular typing specialists; Cardiac surgeons/ perfusionists/ cardiologists; Ophthalmology; Anaesthesiologists; Public Health.

J Hosp Infect. 2019 Nov 9. pii: S0195-6701(19)30444-X. doi: 10.1016/j.jhin.2019.10.009. [Epub ahead of print]

2.

Accuracy of whole genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany.

Diel R, Kohl TA, Maurer FP, Merker M, Meywald Walter K, Hannemann J, Nienhaus A, Supply P, Niemann S.

Eur Respir J. 2019 Sep 12. pii: 1901154. doi: 10.1183/13993003.01154-2019. [Epub ahead of print] No abstract available.

PMID:
31467121
3.

Giant Bulla Imitating Tension Pneumothorax.

Schumann M, Hamed A, Kohl T.

Dtsch Arztebl Int. 2019 Jun 28;116(26):461. doi: 10.3238/arztebl.2019.0461. No abstract available.

4.

Using Dounce Homogenization to Lyse Cells for Immunoprecipitation.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2019 Jul 1;2019(7):pdb.prot098574. doi: 10.1101/pdb.prot098574.

PMID:
31262961
5.

Junctophilin-2 expression rescues atrial dysfunction through polyadic junctional membrane complex biogenesis.

Brandenburg S, Pawlowitz J, Eikenbusch B, Peper J, Kohl T, Mitronova GY, Sossalla S, Hasenfuss G, Wehrens XH, Kohl P, Rog-Zielinska EA, Lehnart SE.

JCI Insight. 2019 Jun 20;4(12). pii: 127116. doi: 10.1172/jci.insight.127116. eCollection 2019 Jun 20.

6.

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.

Meehan CJ, Goig GA, Kohl TA, Verboven L, Dippenaar A, Ezewudo M, Farhat MR, Guthrie JL, Laukens K, Miotto P, Ofori-Anyinam B, Dreyer V, Supply P, Suresh A, Utpatel C, van Soolingen D, Zhou Y, Ashton PM, Brites D, Cabibbe AM, de Jong BC, de Vos M, Menardo F, Gagneux S, Gao Q, Heupink TH, Liu Q, Loiseau C, Rigouts L, Rodwell TC, Tagliani E, Walker TM, Warren RM, Zhao Y, Zignol M, Schito M, Gardy J, Cirillo DM, Niemann S, Comas I, Van Rie A.

Nat Rev Microbiol. 2019 Sep;17(9):533-545. doi: 10.1038/s41579-019-0214-5. Review.

PMID:
31209399
7.

Neuronal Substrates for Infrared Contrast Enhancement and Motion Detection in Rattlesnakes.

Bothe MS, Luksch H, Straka H, Kohl T.

Curr Biol. 2019 Jun 3;29(11):1827-1832.e4. doi: 10.1016/j.cub.2019.04.035. Epub 2019 May 16.

PMID:
31104931
8.

Multicentre study to establish interpretive criteria for clofazimine drug susceptibility testing.

Ismail NA, Said HM, Rodrigues C, Omar SV, Ajbani K, Sukhadiad N, Kohl TA, Niemann S, Kranzer K, Diels M, Rigouts L, Rüsch-Gerdes S, Siddiqi S.

Int J Tuberc Lung Dis. 2019 May 1;23(5):594-599. doi: 10.5588/ijtld.18.0417.

PMID:
31097068
9.

Revised Interpretation of the Hain Lifescience GenoType MTBC To Differentiate Mycobacterium canettii and Members of the Mycobacterium tuberculosis Complex.

Loiseau C, Brites D, Moser I, Coll F, Pourcel C, Robbe-Austerman S, Escuyer V, Musser KA, Peacock SJ, Feuerriegel S, Kohl TA, Niemann S, Gagneux S, Köser CU.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e00159-19. doi: 10.1128/AAC.00159-19. Print 2019 Jun.

10.

Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia.

Arandjelović I, Merker M, Richter E, Kohl TA, Savić B, Soldatović I, Wirth T, Vuković D, Niemann S.

Emerg Infect Dis. 2019 Mar;25(3):555-558. doi: 10.3201/eid2503.181220.

11.

Tandem Immunoaffinity Purification Using Anti-FLAG and Anti-HA Antibodies.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2019 Feb 1;2019(2). doi: 10.1101/pdb.prot098657.

PMID:
30710027
12.

Cross-Linking Antibodies to Beads with Disuccinimidyl Suberate (DSS).

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2019 Feb 1;2019(2). doi: 10.1101/pdb.prot098632.

PMID:
30710026
13.

Cross-Linking Antibodies to Beads Using Dimethyl Pimelimidate (DMP).

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2019 Feb 1;2019(2). doi: 10.1101/pdb.prot098624.

PMID:
30710025
14.

Drug-resistance profiling and transmission dynamics of multidrug-resistant Mycobacterium tuberculosis in Saudi Arabia revealed by whole genome sequencing.

Al-Ghafli H, Kohl TA, Merker M, Varghese B, Halees A, Niemann S, Al-Hajoj S.

Infect Drug Resist. 2018 Nov 12;11:2219-2229. doi: 10.2147/IDR.S181124. eCollection 2018.

15.

Contemporary management of prenatally diagnosed spina bifida aperta - an update.

Kosinski P, Brawura Biskupski Samaha R, Lipa M, Wielgos M, Kohl T.

Ginekol Pol. 2018;89(11):637-641. doi: 10.5603/GP.a2018.0108. Review.

16.

MTBseq: a comprehensive pipeline for whole genome sequence analysis of Mycobacterium tuberculosis complex isolates.

Kohl TA, Utpatel C, Schleusener V, De Filippo MR, Beckert P, Cirillo DM, Niemann S.

PeerJ. 2018 Nov 13;6:e5895. doi: 10.7717/peerj.5895. eCollection 2018.

17.

Genetic Diversity of Multi- and Extensively Drug-Resistant Mycobacterium tuberculosis Isolates in the Capital of Iran, Revealed by Whole-Genome Sequencing.

Vaziri F, Kohl TA, Ghajavand H, Kargarpour Kamakoli M, Merker M, Hadifar S, Khanipour S, Fateh A, Masoumi M, Siadat SD, Niemann S.

J Clin Microbiol. 2019 Jan 2;57(1). pii: e01477-18. doi: 10.1128/JCM.01477-18. Print 2019 Jan.

18.

Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia.

Merker M, Barbier M, Cox H, Rasigade JP, Feuerriegel S, Kohl TA, Diel R, Borrell S, Gagneux S, Nikolayevskyy V, Andres S, Nübel U, Supply P, Wirth T, Niemann S.

Elife. 2018 Oct 30;7. pii: e38200. doi: 10.7554/eLife.38200.

19.

Axial Tubule Junctions Activate Atrial Ca2+ Release Across Species.

Brandenburg S, Pawlowitz J, Fakuade FE, Kownatzki-Danger D, Kohl T, Mitronova GY, Scardigli M, Neef J, Schmidt C, Wiedmann F, Pavone FS, Sacconi L, Kutschka I, Sossalla S, Moser T, Voigt N, Lehnart SE.

Front Physiol. 2018 Oct 8;9:1227. doi: 10.3389/fphys.2018.01227. eCollection 2018.

20.

The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology.

Meehan CJ, Moris P, Kohl TA, Pečerska J, Akter S, Merker M, Utpatel C, Beckert P, Gehre F, Lempens P, Stadler T, Kaswa MK, Kühnert D, Niemann S, de Jong BC.

EBioMedicine. 2018 Nov;37:410-416. doi: 10.1016/j.ebiom.2018.10.013. Epub 2018 Oct 16.

21.

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase.

Ezewudo M, Borens A, Chiner-Oms Á, Miotto P, Chindelevitch L, Starks AM, Hanna D, Liwski R, Zignol M, Gilpin C, Niemann S, Kohl TA, Warren RM, Crook D, Gagneux S, Hoffner S, Rodrigues C, Comas I, Engelthaler DM, Alland D, Rigouts L, Lange C, Dheda K, Hasan R, McNerney R, Cirillo DM, Schito M, Rodwell TC, Posey J.

Sci Rep. 2018 Oct 18;8(1):15382. doi: 10.1038/s41598-018-33731-1.

22.

No Evidence for Acquired Mutations Associated with Cytochrome bc 1 Inhibitor Resistance in 13,559 Clinical Mycobacterium tuberculosis Complex Isolates.

Rybniker J, Kohl TA, Barilar I, Niemann S.

Antimicrob Agents Chemother. 2018 Dec 21;63(1). pii: e01317-18. doi: 10.1128/AAC.01317-18. Print 2019 Jan. No abstract available.

23.

The Genetic Transformation of Chlamydia pneumoniae.

Shima K, Wanker M, Skilton RJ, Cutcliffe LT, Schnee C, Kohl TA, Niemann S, Geijo J, Klinger M, Timms P, Rattei T, Sachse K, Clarke IN, Rupp J.

mSphere. 2018 Oct 10;3(5). pii: e00412-18. doi: 10.1128/mSphere.00412-18.

24.

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.

CRyPTIC Consortium and the 100,000 Genomes Project, Allix-Béguec C, Arandjelovic I, Bi L, Beckert P, Bonnet M, Bradley P, Cabibbe AM, Cancino-Muñoz I, Caulfield MJ, Chaiprasert A, Cirillo DM, Clifton DA, Comas I, Crook DW, De Filippo MR, de Neeling H, Diel R, Drobniewski FA, Faksri K, Farhat MR, Fleming J, Fowler P, Fowler TA, Gao Q, Gardy J, Gascoyne-Binzi D, Gibertoni-Cruz AL, Gil-Brusola A, Golubchik T, Gonzalo X, Grandjean L, He G, Guthrie JL, Hoosdally S, Hunt M, Iqbal Z, Ismail N, Johnston J, Khanzada FM, Khor CC, Kohl TA, Kong C, Lipworth S, Liu Q, Maphalala G, Martinez E, Mathys V, Merker M, Miotto P, Mistry N, Moore DAJ, Murray M, Niemann S, Omar SV, Ong RT, Peto TEA, Posey JE, Prammananan T, Pym A, Rodrigues C, Rodrigues M, Rodwell T, Rossolini GM, Sánchez Padilla E, Schito M, Shen X, Shendure J, Sintchenko V, Sloutsky A, Smith EG, Snyder M, Soetaert K, Starks AM, Supply P, Suriyapol P, Tahseen S, Tang P, Teo YY, Thuong TNT, Thwaites G, Tortoli E, van Soolingen D, Walker AS, Walker TM, Wilcox M, Wilson DJ, Wyllie D, Yang Y, Zhang H, Zhao Y, Zhu B.

N Engl J Med. 2018 Oct 11;379(15):1403-1415. doi: 10.1056/NEJMoa1800474. Epub 2018 Sep 26.

25.

Beyond the 3'UTR binding-microRNA-induced protein truncation via DNA binding.

von Brandenstein M, Bernhart SH, Pansky A, Richter C, Kohl T, Deckert M, Heidenreich A, Stadler PF, Montesinos-Rongen M, Fries JWU.

Oncotarget. 2018 Aug 28;9(67):32855-32867. doi: 10.18632/oncotarget.26023. eCollection 2018 Aug 28.

26.

Metabolic Labeling of Protein Antigens with [32P]Orthophosphate.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2018 Sep 4;2018(9). doi: 10.1101/pdb.prot098533.

PMID:
30181225
27.

Pulse-Chase Labeling of Protein Antigens with [35S]Methionine.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2018 Sep 4;2018(9). doi: 10.1101/pdb.prot098525.

PMID:
30181224
28.

Fast update of undetected Mycobacterium chimaera infections to reveal unsuspected cases.

Acosta F, Pérez-Lago L, Ruiz Serrano MJ, Marín M, Kohl TA, Lozano N, Niemann S, Valerio M, Olmedo M, Pérez-Granda MJ, Pérez Pérez MR, Bouza E, Muñoz P, García de Viedma D.

J Hosp Infect. 2018 Dec;100(4):451-455. doi: 10.1016/j.jhin.2018.08.018. Epub 2018 Sep 1.

PMID:
30179655
29.

Harmonized Genome Wide Typing of Tubercle Bacilli Using a Web-Based Gene-By-Gene Nomenclature System.

Kohl TA, Harmsen D, Rothgänger J, Walker T, Diel R, Niemann S.

EBioMedicine. 2018 Aug;34:131-138. doi: 10.1016/j.ebiom.2018.07.030. Epub 2018 Aug 13.

30.

Reply to Dookie et al., "Whole-Genome Sequencing To Guide the Selection of Treatment for Drug-Resistant Tuberculosis".

Köser CU, Heyckendorf J, Andres S, Olaru ID, Schön T, Sturegård E, Beckert P, Schleusener V, Kohl TA, Hillemann D, Moradigaravand D, Parkhill J, Peacock SJ, Niemann S, Lange C, Merker M.

Antimicrob Agents Chemother. 2018 Jul 27;62(8). pii: e00616-18. doi: 10.1128/AAC.00616-18. Print 2018 Aug. No abstract available.

31.

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches.

Otchere ID, Coscollá M, Sánchez-Busó L, Asante-Poku A, Brites D, Loiseau C, Meehan C, Osei-Wusu S, Forson A, Laryea C, Yahayah AI, Baddoo A, Ansa GA, Aboagye SY, Asare P, Borrell S, Gehre F, Beckert P, Kohl TA, N'dira S, Beisel C, Antonio M, Niemann S, de Jong BC, Parkhill J, Harris SR, Gagneux S, Yeboah-Manu D.

Sci Rep. 2018 Jul 26;8(1):11269. doi: 10.1038/s41598-018-29620-2.

32.
33.

Aortic Endograft Infection with Mycobacterium chimaera and Granulicatella adiacens, Switzerland, 2014.

Plate A, Kohl TA, Keller PM, Majer S, Fulchini R, Strahm C, Medugno C, Rancic Z, Husmann L, Sax H, Niemann S, Hasse B.

Emerg Infect Dis. 2018 Sep;24(9):1700-1704. doi: 10.3201/eid2409.180247. Epub 2018 Sep 17.

34.
35.

Perspectives for personalized therapy for patients with multidrug-resistant tuberculosis.

Lange C, Alghamdi WA, Al-Shaer MH, Brighenti S, Diacon AH, DiNardo AR, Grobbel HP, Gröschel MI, von Groote-Bidlingmaier F, Hauptmann M, Heyckendorf J, Köhler N, Kohl TA, Merker M, Niemann S, Peloquin CA, Reimann M, Schaible UE, Schaub D, Schleusener V, Thye T, Schön T.

J Intern Med. 2018 May 28. doi: 10.1111/joim.12780. [Epub ahead of print]

PMID:
29806961
36.

Analysis of Phylogenetic Variation of Stenotrophomonas maltophilia Reveals Human-Specific Branches.

Steinmann J, Mamat U, Abda EM, Kirchhoff L, Streit WR, Schaible UE, Niemann S, Kohl TA.

Front Microbiol. 2018 Apr 26;9:806. doi: 10.3389/fmicb.2018.00806. eCollection 2018.

37.

Genetic sequencing for surveillance of drug resistance in tuberculosis in highly endemic countries: a multi-country population-based surveillance study.

Zignol M, Cabibbe AM, Dean AS, Glaziou P, Alikhanova N, Ama C, Andres S, Barbova A, Borbe-Reyes A, Chin DP, Cirillo DM, Colvin C, Dadu A, Dreyer A, Driesen M, Gilpin C, Hasan R, Hasan Z, Hoffner S, Hussain A, Ismail N, Kamal SMM, Khanzada FM, Kimerling M, Kohl TA, Mansjö M, Miotto P, Mukadi YD, Mvusi L, Niemann S, Omar SV, Rigouts L, Schito M, Sela I, Seyfaddinova M, Skenders G, Skrahina A, Tahseen S, Wells WA, Zhurilo A, Weyer K, Floyd K, Raviglione MC.

Lancet Infect Dis. 2018 Jun;18(6):675-683. doi: 10.1016/S1473-3099(18)30073-2. Epub 2018 Mar 21. Erratum in: Lancet Infect Dis. 2018 Mar 27;:.

38.

Partial amniotic carbon dioxide insufflation (PACI) during minimally invasive fetoscopic interventions on fetuses with spina bifida aperta.

Ziemann M, Fimmers R, Khaleeva A, Schürg R, Weigand MA, Kohl T.

Surg Endosc. 2018 Jul;32(7):3138-3148. doi: 10.1007/s00464-018-6029-z. Epub 2018 Jan 16.

PMID:
29340812
39.

[Reconstructive surgery of ureteral stricture disease].

Heidenreich A, Grabbert M, Kohl T, Pfister D.

Aktuelle Urol. 2017 Dec;48(6):550-560. doi: 10.1055/s-0043-120806. Epub 2017 Dec 7. German.

PMID:
29216663
40.

Immunoprecipitation.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2017 Dec 1;2017(12):pdb.prot098640. doi: 10.1101/pdb.prot098640.

PMID:
29196601
41.

Detergent Lysis of Animal Tissues for Immunoprecipitation.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2017 Dec 1;2017(12):pdb.prot098566. doi: 10.1101/pdb.prot098566.

PMID:
29196600
42.

Detergent Lysis of Tissue Culture Cells for Immunoprecipitation.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2017 Dec 1;2017(12):pdb.prot098558. doi: 10.1101/pdb.prot098558.

PMID:
29196599
43.

Mycobacterium abscessus, a taxonomic puzzle.

Tortoli E, Kohl TA, Brown-Elliott BA, Trovato A, Cardoso-Leão S, Garcia MJ, Vasireddy S, Turenne CY, Griffith DE, Philley JV, Niemann S, Wallace RJ, Cirillo DM.

Int J Syst Evol Microbiol. 2018 Jan;68(1):467-469. doi: 10.1099/ijsem.0.002457. Epub 2017 Nov 15. No abstract available.

PMID:
29139343
44.

What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis.

Heyckendorf J, Andres S, Köser CU, Olaru ID, Schön T, Sturegård E, Beckert P, Schleusener V, Kohl TA, Hillemann D, Moradigaravand D, Parkhill J, Peacock SJ, Niemann S, Lange C, Merker M.

Antimicrob Agents Chemother. 2018 Jan 25;62(2). pii: e01550-17. doi: 10.1128/AAC.01550-17. Print 2018 Feb.

45.

The Evolution of Strain Typing in the Mycobacterium tuberculosis Complex.

Merker M, Kohl TA, Niemann S, Supply P.

Adv Exp Med Biol. 2017;1019:43-78. doi: 10.1007/978-3-319-64371-7_3. Review.

PMID:
29116629
46.

Metabolic Labeling of Protein Antigens with [35S]Methionine.

DeCaprio J, Kohl TO.

Cold Spring Harb Protoc. 2017 Oct 3;2017(10):pdb.prot098517. doi: 10.1101/pdb.prot098517.

PMID:
28974658
47.

Role of Alanine Racemase Mutations in Mycobacterium tuberculosis d-Cycloserine Resistance.

Nakatani Y, Opel-Reading HK, Merker M, Machado D, Andres S, Kumar SS, Moradigaravand D, Coll F, Perdigão J, Portugal I, Schön T, Nair D, Devi KRU, Kohl TA, Beckert P, Clark TG, Maphalala G, Khumalo D, Diel R, Klaos K, Aung HL, Cook GM, Parkhill J, Peacock SJ, Swaminathan S, Viveiros M, Niemann S, Krause KL, Köser CU.

Antimicrob Agents Chemother. 2017 Nov 22;61(12). pii: e01575-17. doi: 10.1128/AAC.01575-17. Print 2017 Dec.

48.

Shaping the niche in macrophages: Genetic diversity of the M. tuberculosis complex and its consequences for the infected host.

Reiling N, Homolka S, Kohl TA, Steinhäuser C, Kolbe K, Schütze S, Brandenburg J.

Int J Med Microbiol. 2018 Jan;308(1):118-128. doi: 10.1016/j.ijmm.2017.09.009. Epub 2017 Sep 14. Review.

PMID:
28969988
49.

High-Affinity Functional Fluorescent Ligands for Human β-Adrenoceptors.

Mitronova GY, Lukinavičius G, Butkevich AN, Kohl T, Belov VN, Lehnart SE, Hell SW.

Sci Rep. 2017 Sep 26;7(1):12319. doi: 10.1038/s41598-017-12468-3.

50.

Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study.

van Ingen J, Kohl TA, Kranzer K, Hasse B, Keller PM, Katarzyna Szafrańska A, Hillemann D, Chand M, Schreiber PW, Sommerstein R, Berger C, Genoni M, Rüegg C, Troillet N, Widmer AF, Becker SL, Herrmann M, Eckmanns T, Haller S, Höller C, Debast SB, Wolfhagen MJ, Hopman J, Kluytmans J, Langelaar M, Notermans DW, Ten Oever J, van den Barselaar P, Vonk ABA, Vos MC, Ahmed N, Brown T, Crook D, Lamagni T, Phin N, Smith EG, Zambon M, Serr A, Götting T, Ebner W, Thürmer A, Utpatel C, Spröer C, Bunk B, Nübel U, Bloemberg GV, Böttger EC, Niemann S, Wagner D, Sax H.

Lancet Infect Dis. 2017 Oct;17(10):1033-1041. doi: 10.1016/S1473-3099(17)30324-9. Epub 2017 Jul 12.

PMID:
28711585

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