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Items: 23

1.

In Vivo Gene Essentiality and Metabolism in Bordetella pertussis.

Gonyar LA, Gelbach PE, McDuffie DG, Koeppel AF, Chen Q, Lee G, Temple LM, Stibitz S, Hewlett EL, Papin JA, Damron FH, Eby JC.

mSphere. 2019 May 22;4(3). pii: e00694-18. doi: 10.1128/mSphere.00694-18.

2.

Comparative Transcriptomic Analysis Identifies a Range of Immunologically Related Functional Elaborations of Lymph Node Associated Lymphatic and Blood Endothelial Cells.

Berendam SJ, Koeppel AF, Godfrey NR, Rouhani SJ, Woods AN, Rodriguez AB, Peske JD, Cummings KL, Turner SD, Engelhard VH.

Front Immunol. 2019 Apr 16;10:816. doi: 10.3389/fimmu.2019.00816. eCollection 2019.

3.

Mycobacterium Avium Complex Diversity within Lung Disease as Revealed by Whole Genome Sequencing.

Operario DJ, Pholwat S, Koeppel AF, Prorock A, Bao Y, Sol-Church K, Scheurenbrand M, Poulter M, Turner S, Parikh HI, Mathers A, Houpt ER.

Am J Respir Crit Care Med. 2019 Apr 9. doi: 10.1164/rccm.201903-0669LE. [Epub ahead of print] No abstract available.

PMID:
30965019
4.

In situ 10-cell RNA sequencing in tissue and tumor biopsy samples.

Singh S, Wang L, Schaff DL, Sutcliffe MD, Koeppel AF, Kim J, Onengut-Gumuscu S, Park KS, Zong H, Janes KA.

Sci Rep. 2019 Mar 20;9(1):4836. doi: 10.1038/s41598-019-41235-9.

5.

Differential gene expression during placentation in pregnancies conceived with different fertility treatments compared with spontaneous pregnancies.

Lee B, Koeppel AF, Wang ET, Gonzalez TL, Sun T, Kroener L, Lin Y, Joshi NV, Ghadiali T, Turner SD, Rich SS, Farber CR, Rotter JI, Ida Chen YD, Goodarzi MO, Guller S, Harwood B, Serna TB, Williams J 3rd, Pisarska MD.

Fertil Steril. 2019 Mar;111(3):535-546. doi: 10.1016/j.fertnstert.2018.11.005. Epub 2019 Jan 2.

PMID:
30611556
6.

Extensional flow behaviour and spinnability of native silk.

Koeppel A, Laity PR, Holland C.

Soft Matter. 2018 Nov 7;14(43):8838-8845. doi: 10.1039/c8sm01199k.

7.

Sex differences in the late first trimester human placenta transcriptome.

Gonzalez TL, Sun T, Koeppel AF, Lee B, Wang ET, Farber CR, Rich SS, Sundheimer LW, Buttle RA, Chen YI, Rotter JI, Turner SD, Williams J 3rd, Goodarzi MO, Pisarska MD.

Biol Sex Differ. 2018 Jan 15;9(1):4. doi: 10.1186/s13293-018-0165-y.

8.

Correction: Prevalence and extent of heteroresistance by next generation sequencing of multidrug-resistant tuberculosis.

Operario DJ, Koeppel AF, Turner SD, Bao Y, Pholwat S, Banu S, Foongladda S, Mpagama S, Gratz J, Ogarkov O, Zhadova S, Heysell SK, Houpt ER.

PLoS One. 2017 Jul 7;12(7):e0181284. doi: 10.1371/journal.pone.0181284. eCollection 2017.

9.

Prevalence and extent of heteroresistance by next generation sequencing of multidrug-resistant tuberculosis.

Operario DJ, Koeppel AF, Turner SD, Bao Y, Pholwat S, Banu S, Foongladda S, Mpagama S, Gratz J, Ogarkov O, Zhadova S, Heysell SK, Houpt ER.

PLoS One. 2017 May 18;12(5):e0176522. doi: 10.1371/journal.pone.0176522. eCollection 2017. Erratum in: PLoS One. 2017 Jul 7;12 (7):e0181284.

10.

Targetable T-type Calcium Channels Drive Glioblastoma.

Zhang Y, Cruickshanks N, Yuan F, Wang B, Pahuski M, Wulfkuhle J, Gallagher I, Koeppel AF, Hatef S, Papanicolas C, Lee J, Bar EE, Schiff D, Turner SD, Petricoin EF, Gray LS, Abounader R.

Cancer Res. 2017 Jul 1;77(13):3479-3490. doi: 10.1158/0008-5472.CAN-16-2347. Epub 2017 May 16.

11.

Investigation of Genetic Variants Associated with Alzheimer Disease in Parkinson Disease Cognition.

Barrett MJ, Koeppel AF, Flanigan JL, Turner SD, Worrall BB.

J Parkinsons Dis. 2016;6(1):119-24. doi: 10.3233/JPD-150706.

PMID:
26889634
12.

Systems Analysis of Adaptive Responses to MAP Kinase Pathway Blockade in BRAF Mutant Melanoma.

Capaldo BJ, Roller D, Axelrod MJ, Koeppel AF, Petricoin EF, Slingluff CL Jr, Weber MJ, Mackey AJ, Gioeli D, Bekiranov S.

PLoS One. 2015 Sep 25;10(9):e0138210. doi: 10.1371/journal.pone.0138210. eCollection 2015.

13.

Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge.

Allen EK, Koeppel AF, Hendley JO, Turner SD, Winther B, Sale MM.

Microbiome. 2014 Jun 25;2:22. doi: 10.1186/2049-2618-2-22. eCollection 2014.

14.

Species matter: the role of competition in the assembly of congeneric bacteria.

Koeppel AF, Wu M.

ISME J. 2014 Mar;8(3):531-40. doi: 10.1038/ismej.2013.180. Epub 2013 Oct 17.

15.

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units.

Koeppel AF, Wu M.

Nucleic Acids Res. 2013 May 1;41(10):5175-88. doi: 10.1093/nar/gkt241. Epub 2013 Apr 9.

16.

Global marine bacterial diversity peaks at high latitudes in winter.

Ladau J, Sharpton TJ, Finucane MM, Jospin G, Kembel SW, O'Dwyer J, Koeppel AF, Green JL, Pollard KS.

ISME J. 2013 Sep;7(9):1669-77. doi: 10.1038/ismej.2013.37. Epub 2013 Mar 21. Erratum in: ISME J.2013 Sep;7(9)1876.

17.

Speedy speciation in a bacterial microcosm: new species can arise as frequently as adaptations within a species.

Koeppel AF, Wertheim JO, Barone L, Gentile N, Krizanc D, Cohan FM.

ISME J. 2013 Jun;7(6):1080-91. doi: 10.1038/ismej.2013.3. Epub 2013 Jan 31.

18.

Lineage-dependent ecological coherence in bacteria.

Koeppel AF, Wu M.

FEMS Microbiol Ecol. 2012 Sep;81(3):574-82. doi: 10.1111/j.1574-6941.2012.01387.x. Epub 2012 May 23.

19.

Ecology of speciation in the genus Bacillus.

Connor N, Sikorski J, Rooney AP, Kopac S, Koeppel AF, Burger A, Cole SG, Perry EB, Krizanc D, Field NC, Slaton M, Cohan FM.

Appl Environ Microbiol. 2010 Mar;76(5):1349-58. doi: 10.1128/AEM.01988-09. Epub 2010 Jan 4.

20.

The origins of ecological diversity in prokaryotes.

Cohan FM, Koeppel AF.

Curr Biol. 2008 Nov 11;18(21):R1024-34. doi: 10.1016/j.cub.2008.09.014. Review.

21.

Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics.

Koeppel A, Perry EB, Sikorski J, Krizanc D, Warner A, Ward DM, Rooney AP, Brambilla E, Connor N, Ratcliff RM, Nevo E, Cohan FM.

Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2504-9. doi: 10.1073/pnas.0712205105. Epub 2008 Feb 12.

22.

Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function.

Ward DM, Bateson MM, Ferris MJ, Kühl M, Wieland A, Koeppel A, Cohan FM.

Philos Trans R Soc Lond B Biol Sci. 2006 Nov 29;361(1475):1997-2008.

23.

Effects of early defibrillation by ambulance personnel on short- and long-term outcome of cardiac arrest survival: the Munich experiment.

Ladwig KH, Schoefinius A, Danner R, Gürtler R, Herman R, Koeppel A, Hauber P.

Chest. 1997 Dec;112(6):1584-91.

PMID:
9404758

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