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Items: 15

1.

Closed Genome Sequence of Escherichia coli K-12 Group Strain C600.

Allué-Guardia A, Nyong EC, Koenig SSK, Vargas SM, Bono JL, Eppinger M.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01052-18. doi: 10.1128/MRA.01052-18. eCollection 2019 Jan.

2.

Closed Genome and Comparative Phylogenetic Analysis of the Clinical Multidrug Resistant Shigella sonnei Strain 866.

Allué-Guardia A, Koenig SSK, Quirós P, Muniesa M, Bono JL, Eppinger M.

Genome Biol Evol. 2018 Sep 1;10(9):2241-2247. doi: 10.1093/gbe/evy168.

3.

Closed Genome Sequence of Vibrio cholerae O1 El Tor Inaba Strain A1552.

Allué-Guardia A, Echazarreta M, Koenig SSK, Klose KE, Eppinger M.

Genome Announc. 2018 Mar 1;6(9). pii: e00098-18. doi: 10.1128/genomeA.00098-18.

4.

Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks.

Rusconi B, Sanjar F, Koenig SS, Mammel MK, Tarr PI, Eppinger M.

Front Microbiol. 2016 Jun 30;7:985. doi: 10.3389/fmicb.2016.00985. eCollection 2016.

5.

Genome Sequence of Bacillus thuringiensis Strain Btm27, an Egyptian Isolate Highly Toxic to Cotton Leafworm.

Rusconi B, Chen Y, Koenig SS, El-Helow ER, Eppinger M.

Genome Announc. 2015 May 14;3(3). pii: e00446-15. doi: 10.1128/genomeA.00446-15.

6.

Characterization of the pathogenome and phylogenomic classification of enteropathogenic Escherichia coli of the O157:non-H7 serotypes.

Sanjar F, Rusconi B, Hazen TH, Koenig SS, Mammel MK, Feng PC, Rasko DA, Eppinger M.

Pathog Dis. 2015 Jul;73(5). pii: ftv033. doi: 10.1093/femspd/ftv033. Epub 2015 May 10.

7.

Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic.

Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, Ravel J, Keim PS.

MBio. 2014 Nov 4;5(6):e01721. doi: 10.1128/mBio.01721-14.

8.

Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis.

Ravel J, Brotman RM, Gajer P, Ma B, Nandy M, Fadrosh DW, Sakamoto J, Koenig SS, Fu L, Zhou X, Hickey RJ, Schwebke JR, Forney LJ.

Microbiome. 2013 Dec 2;1(1):29. doi: 10.1186/2049-2618-1-29.

9.

Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States.

Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, Ravel J, Fraser CM, Rasko DA, Eppinger M.

Genome Announc. 2014 Jan 9;2(1). pii: e01120-13. doi: 10.1128/genomeA.01120-13.

10.

Twice-daily application of HIV microbicides alter the vaginal microbiota.

Ravel J, Gajer P, Fu L, Mauck CK, Koenig SS, Sakamoto J, Motsinger-Reif AA, Doncel GF, Zeichner SL.

MBio. 2012 Dec 18;3(6). pii: e00370-12. doi: 10.1128/mBio.00370-12.

11.

Temporal dynamics of the human vaginal microbiota.

Gajer P, Brotman RM, Bai G, Sakamoto J, Schütte UM, Zhong X, Koenig SS, Fu L, Ma ZS, Zhou X, Abdo Z, Forney LJ, Ravel J.

Sci Transl Med. 2012 May 2;4(132):132ra52. doi: 10.1126/scitranslmed.3003605.

12.

Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants.

Sellitto M, Bai G, Serena G, Fricke WF, Sturgeon C, Gajer P, White JR, Koenig SS, Sakamoto J, Boothe D, Gicquelais R, Kryszak D, Puppa E, Catassi C, Ravel J, Fasano A.

PLoS One. 2012;7(3):e33387. doi: 10.1371/journal.pone.0033387. Epub 2012 Mar 14.

13.

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.

Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS.

J Bacteriol. 2011 Aug;193(16):4199-213. doi: 10.1128/JB.00449-11. Epub 2011 Jun 24.

14.

Vaginal microbiome of reproductive-age women.

Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Gorle R, Russell J, Tacket CO, Brotman RM, Davis CC, Ault K, Peralta L, Forney LJ.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4680-7. doi: 10.1073/pnas.1002611107. Epub 2010 Jun 3.

15.

Comparison of self-collected and physician-collected vaginal swabs for microbiome analysis.

Forney LJ, Gajer P, Williams CJ, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Brotman RM, Davis CC, Ault K, Ravel J.

J Clin Microbiol. 2010 May;48(5):1741-8. doi: 10.1128/JCM.01710-09. Epub 2010 Mar 3.

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