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Items: 11


Microbial shifts in the aging mouse gut.

Langille MG, Meehan CJ, Koenig JE, Dhanani AS, Rose RA, Howlett SE, Beiko RG.

Microbiome. 2014 Dec 5;2(1):50. doi: 10.1186/s40168-014-0050-9. eCollection 2014.


The effect of S-adenosylmethionine on cognitive performance in mice: an animal model meta-analysis.

Montgomery SE, Sepehry AA, Wangsgaard JD, Koenig JE.

PLoS One. 2014 Oct 27;9(10):e107756. doi: 10.1371/journal.pone.0107756. eCollection 2014. Review.


Integron gene cassettes: a repository of novel protein folds with distinct interaction sites.

Sureshan V, Deshpande CN, Boucher Y, Koenig JE; Midwest Center for Structural Genomics, Stokes HW, Harrop SJ, Curmi PM, Mabbutt BC.

PLoS One. 2013;8(1):e52934. doi: 10.1371/journal.pone.0052934. Epub 2013 Jan 18.


Coral-mucus-associated Vibrio integrons in the Great Barrier Reef: genomic hotspots for environmental adaptation.

Koenig JE, Bourne DG, Curtis B, Dlutek M, Stokes HW, Doolittle WF, Boucher Y.

ISME J. 2011 Jun;5(6):962-72. doi: 10.1038/ismej.2010.193. Epub 2011 Jan 27.


Succession of microbial consortia in the developing infant gut microbiome.

Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, Angenent LT, Ley RE.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4578-85. doi: 10.1073/pnas.1000081107. Epub 2010 Jul 28.


QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.


Integron gene cassettes and degradation of compounds associated with industrial waste: the case of the Sydney tar ponds.

Koenig JE, Sharp C, Dlutek M, Curtis B, Joss M, Boucher Y, Doolittle WF.

PLoS One. 2009;4(4):e5276. doi: 10.1371/journal.pone.0005276. Epub 2009 Apr 23.


ACID: annotation of cassette and integron data.

Joss MJ, Koenig JE, Labbate M, Polz MF, Gillings MR, Stokes HW, Doolittle WF, Boucher Y.

BMC Bioinformatics. 2009 Apr 21;10:118. doi: 10.1186/1471-2105-10-118.


Integron-associated gene cassettes in Halifax Harbour: assessment of a mobile gene pool in marine sediments.

Koenig JE, Boucher Y, Charlebois RL, Nesbø C, Zhaxybayeva O, Bapteste E, Spencer M, Joss MJ, Stokes HW, Doolittle WF.

Environ Microbiol. 2008 Apr;10(4):1024-38. doi: 10.1111/j.1462-2920.2007.01524.x. Epub 2008 Jan 7.


Integrons: mobilizable platforms that promote genetic diversity in bacteria.

Boucher Y, Labbate M, Koenig JE, Stokes HW.

Trends Microbiol. 2007 Jul;15(7):301-9. Epub 2007 Jun 12.


Frequent recombination in a saltern population of Halorubrum.

Papke RT, Koenig JE, Rodríguez-Valera F, Doolittle WF.

Science. 2004 Dec 10;306(5703):1928-9.

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