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Items: 1 to 50 of 85

1.

Polarity sorting drives remodeling of actin-myosin networks.

Wollrab V, Belmonte JM, Baldauf L, Leptin M, Nédeléc F, Koenderink GH.

J Cell Sci. 2018 Nov 7. pii: jcs.219717. doi: 10.1242/jcs.219717. [Epub ahead of print]

PMID:
30404824
2.

Design and fabrication of a hybrid alginate hydrogel/poly(ε-caprolactone) mold for auricular cartilage reconstruction.

Visscher DO, Gleadall A, Buskermolen JK, Burla F, Segal J, Koenderink GH, Helder MN, van Zuijlen PPM.

J Biomed Mater Res B Appl Biomater. 2018 Nov 1. doi: 10.1002/jbm.b.34264. [Epub ahead of print]

PMID:
30383916
3.

Actin-microtubule crosstalk in cell biology.

Dogterom M, Koenderink GH.

Nat Rev Mol Cell Biol. 2018 Oct 15. doi: 10.1038/s41580-018-0067-1. [Epub ahead of print] Review.

PMID:
30323238
4.

A new biomimetic assay reveals the temporal role of matrix stiffening in cancer cell invasion.

Staneva R, Burla F, Koenderink GH, Descroix S, Vignjevic DM, Attieh Y, Verhulsel M.

Mol Biol Cell. 2018 Dec 1;29(25):2979-2988. doi: 10.1091/mbc.E18-01-0068. Epub 2018 Oct 10.

PMID:
30303750
5.

Effect of ionic strength on the structure and elongational kinetics of vimentin filaments.

G Lopez C, Saldanha O, Aufderhorst-Roberts A, Martinez-Torres C, Kuijs M, Koenderink GH, Köster S, Huber K.

Soft Matter. 2018 Oct 31;14(42):8445-8454. doi: 10.1039/c8sm01007b.

PMID:
30191240
6.

Inelastic behaviour of cellulose microfibril networks.

Mohan S, Koenderink GH, Velikov KP.

Soft Matter. 2018 Aug 22;14(33):6828-6834. doi: 10.1039/c8sm00904j.

PMID:
30132493
7.

Crack Initiation in Viscoelastic Materials.

Mulla Y, Oliveri G, Overvelde JTB, Koenderink GH.

Phys Rev Lett. 2018 Jun 29;120(26):268002. doi: 10.1103/PhysRevLett.120.268002.

PMID:
30004756
8.

The Role of Network Architecture in Collagen Mechanics.

Jansen KA, Licup AJ, Sharma A, Rens R, MacKintosh FC, Koenderink GH.

Biophys J. 2018 Jun 5;114(11):2665-2678. doi: 10.1016/j.bpj.2018.04.043.

PMID:
29874616
9.

Normal stresses in semiflexible polymer hydrogels.

Vahabi M, Vos BE, de Cagny HCG, Bonn D, Koenderink GH, MacKintosh FC.

Phys Rev E. 2018 Mar;97(3-1):032418. doi: 10.1103/PhysRevE.97.032418.

PMID:
29776166
10.

Observation of Ultrafast Vibrational Energy Transfer in Fibrinogen and Fibrin Fibers.

Dutta B, Vos BE, Rezus YLA, Koenderink GH, Bakker HJ.

J Phys Chem B. 2018 Jun 7;122(22):5870-5876. doi: 10.1021/acs.jpcb.8b03490. Epub 2018 May 25.

11.

Shaping up synthetic cells.

Mulla Y, Aufderhorst-Roberts A, Koenderink GH.

Phys Biol. 2018 Apr 30;15(4):041001. doi: 10.1088/1478-3975/aab923.

PMID:
29570090
12.

Architecture shapes contractility in actomyosin networks.

Koenderink GH, Paluch EK.

Curr Opin Cell Biol. 2018 Feb;50:79-85. doi: 10.1016/j.ceb.2018.01.015. Epub 2018 Feb 23. Review.

PMID:
29482169
13.

Programming the mechanics of cohesive fiber networks by compression.

Vos BE, Liebrand LC, Vahabi M, Biebricher A, Wuite GJL, Peterman EJG, Kurniawan NA, MacKintosh FC, Koenderink GH.

Soft Matter. 2017 Dec 6;13(47):8886-8893. doi: 10.1039/c7sm01393k.

PMID:
29057402
14.

Force percolation of contractile active gels.

Alvarado J, Sheinman M, Sharma A, MacKintosh FC, Koenderink GH.

Soft Matter. 2017 Aug 30;13(34):5624-5644. doi: 10.1039/c7sm00834a. Review.

PMID:
28812094
15.

Nano-antenna enhanced two-focus fluorescence correlation spectroscopy.

Langguth L, Szuba A, Mann SA, Garnett EC, Koenderink GH, Koenderink AF.

Sci Rep. 2017 Jul 20;7(1):5985. doi: 10.1038/s41598-017-06325-6.

16.

Buffers Strongly Modulate Fibrin Self-Assembly into Fibrous Networks.

Kurniawan NA, van Kempen THS, Sonneveld S, Rosalina TT, Vos BE, Jansen KA, Peters GWM, van de Vosse FN, Koenderink GH.

Langmuir. 2017 Jun 27;33(25):6342-6352. doi: 10.1021/acs.langmuir.7b00527. Epub 2017 Jun 13.

17.

Recombinant fibrinogen reveals the differential roles of α- and γ-chain cross-linking and molecular heterogeneity in fibrin clot strain-stiffening.

Piechocka IK, Kurniawan NA, Grimbergen J, Koopman J, Koenderink GH.

J Thromb Haemost. 2017 May;15(5):938-949. doi: 10.1111/jth.13650. Epub 2017 Mar 6.

PMID:
28166607
18.

Porosity Governs Normal Stresses in Polymer Gels.

de Cagny HC, Vos BE, Vahabi M, Kurniawan NA, Doi M, Koenderink GH, MacKintosh FC, Bonn D.

Phys Rev Lett. 2016 Nov 18;117(21):217802. Epub 2016 Nov 18.

PMID:
27911537
19.

Strain-driven criticality underlies nonlinear mechanics of fibrous networks.

Sharma A, Licup AJ, Rens R, Vahabi M, Jansen KA, Koenderink GH, MacKintosh FC.

Phys Rev E. 2016 Oct;94(4-1):042407. Epub 2016 Oct 11.

PMID:
27841637
20.

Fibrin structural and diffusional analysis suggests that fibers are permeable to solute transport.

Leonidakis KA, Bhattacharya P, Patterson J, Vos BE, Koenderink GH, Vermant J, Lambrechts D, Roeffaers M, Van Oosterwyck H.

Acta Biomater. 2017 Jan 1;47:25-39. doi: 10.1016/j.actbio.2016.09.044. Epub 2016 Oct 4.

PMID:
27717911
21.

Fibrin Networks Support Recurring Mechanical Loads by Adapting their Structure across Multiple Scales.

Kurniawan NA, Vos BE, Biebricher A, Wuite GJ, Peterman EJ, Koenderink GH.

Biophys J. 2016 Sep 6;111(5):1026-34. doi: 10.1016/j.bpj.2016.06.034.

22.

Multimodal Spectroscopic Study of Amyloid Fibril Polymorphism.

VandenAkker CC, Schleeger M, Bruinen AL, Deckert-Gaudig T, Velikov KP, Heeren RM, Deckert V, Bonn M, Koenderink GH.

J Phys Chem B. 2016 Sep 1;120(34):8809-17. doi: 10.1021/acs.jpcb.6b05339. Epub 2016 Aug 17.

PMID:
27487391
23.

Erratum: Finite particle size drives defect-mediated domain structures in strongly confined colloidal liquid crystals.

Gârlea IC, Mulder P, Alvarado J, Dammone O, Aarts DG, Pavlik Lettinga M, Koenderink GH, Mulder BM.

Nat Commun. 2016 Aug 3;7:12495. doi: 10.1038/ncomms12495. No abstract available.

24.

Purification of recombinant human and Drosophila septin hexamers for TIRF assays of actin-septin filament assembly.

Mavrakis M, Tsai FC, Koenderink GH.

Methods Cell Biol. 2016;136:199-220. doi: 10.1016/bs.mcb.2016.03.020. Epub 2016 Jun 14.

PMID:
27473911
25.

Finite particle size drives defect-mediated domain structures in strongly confined colloidal liquid crystals.

Gârlea IC, Mulder P, Alvarado J, Dammone O, Aarts DG, Lettinga MP, Koenderink GH, Mulder BM.

Nat Commun. 2016 Jun 29;7:12112. doi: 10.1038/ncomms12112. Erratum in: Nat Commun. 2016 Aug 03;7:12495.

26.

Fibrin-fiber architecture influences cell spreading and differentiation.

Bruekers SM, Jaspers M, Hendriks JM, Kurniawan NA, Koenderink GH, Kouwer PH, Rowan AE, T S Huck W.

Cell Adh Migr. 2016 Sep 2;10(5):495-504. Epub 2016 Feb 24.

27.

Local dynamic mechanical analysis for heterogeneous soft matter using ferrule-top indentation.

van Hoorn H, Kurniawan NA, Koenderink GH, Iannuzzi D.

Soft Matter. 2016 Mar 28;12(12):3066-73. doi: 10.1039/c6sm00300a.

28.

Multi-scale strain-stiffening of semiflexible bundle networks.

Piechocka IK, Jansen KA, Broedersz CP, Kurniawan NA, MacKintosh FC, Koenderink GH.

Soft Matter. 2016 Feb 21;12(7):2145-56. doi: 10.1039/c5sm01992c. Epub 2016 Jan 13.

PMID:
26761718
29.

Shape control of lipid bilayer membranes by confined actin bundles.

Tsai FC, Koenderink GH.

Soft Matter. 2015 Dec 7;11(45):8834-47. doi: 10.1039/c5sm01583a.

PMID:
26395896
30.

Inherently unstable networks collapse to a critical point.

Sheinman M, Sharma A, Alvarado J, Koenderink GH, MacKintosh FC.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jul;92(1):012710. Epub 2015 Jul 8.

PMID:
26274206
31.

A guide to mechanobiology: Where biology and physics meet.

Jansen KA, Donato DM, Balcioglu HE, Schmidt T, Danen EH, Koenderink GH.

Biochim Biophys Acta. 2015 Nov;1853(11 Pt B):3043-52. doi: 10.1016/j.bbamcr.2015.05.007. Epub 2015 May 18. Review.

32.

Reconstituting cytoskeletal contraction events with biomimetic actin-myosin active gels.

Alvarado J, Koenderink GH.

Methods Cell Biol. 2015;128:83-103. doi: 10.1016/bs.mcb.2015.02.001. Epub 2015 Apr 8.

PMID:
25997344
33.

Nanoscale Heterogeneity of the Molecular Structure of Individual hIAPP Amyloid Fibrils Revealed with Tip-Enhanced Raman Spectroscopy.

vandenAkker CC, Deckert-Gaudig T, Schleeger M, Velikov KP, Deckert V, Bonn M, Koenderink GH.

Small. 2015 Sep 2;11(33):4131-9. doi: 10.1002/smll.201500562. Epub 2015 May 7.

PMID:
25952953
34.

Anomalous discontinuity at the percolation critical point of active gels.

Sheinman M, Sharma A, Alvarado J, Koenderink GH, MacKintosh FC.

Phys Rev Lett. 2015 Mar 6;114(9):098104. Epub 2015 Mar 4.

PMID:
25793855
35.

SOAX: a software for quantification of 3D biopolymer networks.

Xu T, Vavylonis D, Tsai FC, Koenderink GH, Nie W, Yusuf E, I-Ju Lee, Wu JQ, Huang X.

Sci Rep. 2015 Mar 13;5:9081. doi: 10.1038/srep09081.

36.

Cytoskeletal crosstalk: when three different personalities team up.

Huber F, Boire A, López MP, Koenderink GH.

Curr Opin Cell Biol. 2015 Feb;32:39-47. doi: 10.1016/j.ceb.2014.10.005. Epub 2014 Nov 15. Review.

PMID:
25460780
37.

Direct visualization of flow-induced conformational transitions of single actin filaments in entangled solutions.

Kirchenbuechler I, Guu D, Kurniawan NA, Koenderink GH, Lettinga MP.

Nat Commun. 2014 Oct 9;5:5060. doi: 10.1038/ncomms6060.

PMID:
25297898
38.

Actin-microtubule coordination at growing microtubule ends.

Preciado López M, Huber F, Grigoriev I, Steinmetz MO, Akhmanova A, Koenderink GH, Dogterom M.

Nat Commun. 2014 Aug 27;5:4778. doi: 10.1038/ncomms5778.

39.

Colloidal liquid crystals in rectangular confinement: theory and experiment.

Lewis AH, Garlea I, Alvarado J, Dammone OJ, Howell PD, Majumdar A, Mulder BM, Lettinga MP, Koenderink GH, Aarts DG.

Soft Matter. 2014 Oct 21;10(39):7865-73. doi: 10.1039/c4sm01123f. Epub 2014 Aug 26.

PMID:
25154421
40.

Factor XIII stiffens fibrin clots by causing fiber compaction.

Kurniawan NA, Grimbergen J, Koopman J, Koenderink GH.

J Thromb Haemost. 2014 Oct;12(10):1687-96. doi: 10.1111/jth.12705. Epub 2014 Sep 18.

41.

Septins promote F-actin ring formation by crosslinking actin filaments into curved bundles.

Mavrakis M, Azou-Gros Y, Tsai FC, Alvarado J, Bertin A, Iv F, Kress A, Brasselet S, Koenderink GH, Lecuit T.

Nat Cell Biol. 2014 Apr;16(4):322-34. doi: 10.1038/ncb2921. Epub 2014 Mar 16.

PMID:
24633326
42.

In vitro reconstitution of dynamic microtubules interacting with actin filament networks.

Preciado López M, Huber F, Grigoriev I, Steinmetz MO, Akhmanova A, Dogterom M, Koenderink GH.

Methods Enzymol. 2014;540:301-20. doi: 10.1016/B978-0-12-397924-7.00017-0.

PMID:
24630114
43.

Alignment of nematic and bundled semiflexible polymers in cell-sized confinement.

Alvarado J, Mulder BM, Koenderink GH.

Soft Matter. 2014 Apr 14;10(14):2354-64. doi: 10.1039/c3sm52421c.

PMID:
24623093
44.

Cells actively stiffen fibrin networks by generating contractile stress.

Jansen KA, Bacabac RG, Piechocka IK, Koenderink GH.

Biophys J. 2013 Nov 19;105(10):2240-51. doi: 10.1016/j.bpj.2013.10.008.

45.

Cell-sized liposomes reveal how actomyosin cortical tension drives shape change.

Carvalho K, Tsai FC, Lees E, Voituriez R, Koenderink GH, Sykes C.

Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16456-61. doi: 10.1073/pnas.1221524110. Epub 2013 Sep 24. Erratum in: Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19969. Tsai, Feng C [corrected to Tsai, Feng-Ching].

46.

Thermal memory in self-assembled collagen fibril networks.

de Wild M, Pomp W, Koenderink GH.

Biophys J. 2013 Jul 2;105(1):200-10. doi: 10.1016/j.bpj.2013.05.035.

47.

Gel-assisted formation of giant unilamellar vesicles.

Weinberger A, Tsai FC, Koenderink GH, Schmidt TF, Itri R, Meier W, Schmatko T, Schröder A, Marques C.

Biophys J. 2013 Jul 2;105(1):154-64. doi: 10.1016/j.bpj.2013.05.024.

48.

The specificity of the interaction between αB-crystallin and desmin filaments and its impact on filament aggregation and cell viability.

Elliott JL, Der Perng M, Prescott AR, Jansen KA, Koenderink GH, Quinlan RA.

Philos Trans R Soc Lond B Biol Sci. 2013 Mar 25;368(1617):20120375. doi: 10.1098/rstb.2012.0375. Print 2013 May 5.

49.

Biomechanical and rheological characterization of mild intervertebral disc degeneration in a large animal model.

Detiger SE, Hoogendoorn RJ, van der Veen AJ, van Royen BJ, Helder MN, Koenderink GH, Smit TH.

J Orthop Res. 2013 May;31(5):703-9. doi: 10.1002/jor.22296. Epub 2012 Dec 19.

50.

Multiple actin binding domains of Ena/VASP proteins determine actin network stiffening.

Gentry BS, van der Meulen S, Noguera P, Alonso-Latorre B, Plastino J, Koenderink GH.

Eur Biophys J. 2012 Nov;41(11):979-90. doi: 10.1007/s00249-012-0861-1. Epub 2012 Sep 29.

PMID:
23052975

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