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Items: 1 to 50 of 161

1.

ARID1A and PI3-kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion.

Wilson MR, Reske JJ, Holladay J, Wilber GE, Rhodes M, Koeman J, Adams M, Johnson B, Su RW, Joshi NR, Patterson AL, Shen H, Leach RE, Teixeira JM, Fazleabas AT, Chandler RL.

Nat Commun. 2019 Aug 7;10(1):3554. doi: 10.1038/s41467-019-11403-6.

2.

Genomic Status of MET Potentiates Sensitivity to MET and MEK Inhibition in NF1-Related Malignant Peripheral Nerve Sheath Tumors.

Peacock JD, Pridgeon MG, Tovar EA, Essenburg CJ, Bowman M, Madaj Z, Koeman J, Boguslawski EA, Grit J, Dodd RD, Khachaturov V, Cardona DM, Chen M, Kirsch DG, Maina F, Dono R, Winn ME, Graveel CR, Steensma MR.

Cancer Res. 2018 Jul 1;78(13):3672-3687. doi: 10.1158/0008-5472.CAN-17-3167. Epub 2018 May 2.

3.

Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma.

deCarvalho AC, Kim H, Poisson LM, Winn ME, Mueller C, Cherba D, Koeman J, Seth S, Protopopov A, Felicella M, Zheng S, Multani A, Jiang Y, Zhang J, Nam DH, Petricoin EF, Chin L, Mikkelsen T, Verhaak RGW.

Nat Genet. 2018 May;50(5):708-717. doi: 10.1038/s41588-018-0105-0. Epub 2018 Apr 23.

4.

The genomic landscape of tuberous sclerosis complex.

Martin KR, Zhou W, Bowman MJ, Shih J, Au KS, Dittenhafer-Reed KE, Sisson KA, Koeman J, Weisenberger DJ, Cottingham SL, DeRoos ST, Devinsky O, Winn ME, Cherniack AD, Shen H, Northrup H, Krueger DA, MacKeigan JP.

Nat Commun. 2017 Jun 15;8:15816. doi: 10.1038/ncomms15816.

5.

Chromosome instability drives phenotypic switching to metastasis.

Gao C, Su Y, Koeman J, Haak E, Dykema K, Essenberg C, Hudson E, Petillo D, Khoo SK, Vande Woude GF.

Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14793-14798. doi: 10.1073/pnas.1618215113. Epub 2016 Dec 5.

6.

Human biosample authentication using the high-throughput, cost-effective SNPtrace(TM) system.

Liang-Chu MM, Yu M, Haverty PM, Koeman J, Ziegle J, Lee M, Bourgon R, Neve RM.

PLoS One. 2015 Feb 25;10(2):e0116218. doi: 10.1371/journal.pone.0116218. eCollection 2015.

7.

Fatigue and health-related quality of life in relapsing-remitting multiple sclerosis after 2 years glatiramer acetate treatment are predicted by changes at 6 months: an observational multi-center study.

Jongen PJ, Lehnick D, Koeman J, Frequin S, Heersema D, Kornips B, Schyns-Soeterboek A, Visser LH, Schiphof P, Valkenburg A, Hiel J; FOCUS Extension Study Group.

J Neurol. 2014 Aug;261(8):1469-76. doi: 10.1007/s00415-014-7363-2. Epub 2014 May 3.

8.

Overexpression of HGF Promotes HBV-Induced Hepatocellular Carcinoma Progression and Is an Effective Indicator for Met-Targeting Therapy.

Xie Q, Su Y, Dykema K, Johnson J, Koeman J, De Giorgi V, Huang A, Schlegel R, Essenburg C, Kang L, Iwaya K, Seki S, Khoo SK, Zhang B, Buonaguro F, Marincola FM, Furge K, Vande Woude GF, Shinomiya N.

Genes Cancer. 2013 Jul;4(7-8):247-60. doi: 10.1177/1947601913501075.

9.

Adherence to monthly online self-assessments for short-term monitoring: a 1-year study in relapsing-remitting multiple sclerosis patients after start of disease modifying treatment.

Jongen PJ, Sanders E, Zwanikken C, Koeman J, Visser LH, Koopmans P, Lehnick D; OPTIVIT study group.

Patient Prefer Adherence. 2013 Apr 9;7:293-300. doi: 10.2147/PPA.S40173. Print 2013.

10.

Partial deletion of the sulfate transporter SLC13A1 is associated with an osteochondrodysplasia in the Miniature Poodle breed.

Neff MW, Beck JS, Koeman JM, Boguslawski E, Kefene L, Borgman A, Ruhe AL.

PLoS One. 2012;7(12):e51917. doi: 10.1371/journal.pone.0051917. Epub 2012 Dec 26.

11.

Genome and transcriptome sequencing in prospective metastatic triple-negative breast cancer uncovers therapeutic vulnerabilities.

Craig DW, O'Shaughnessy JA, Kiefer JA, Aldrich J, Sinari S, Moses TM, Wong S, Dinh J, Christoforides A, Blum JL, Aitelli CL, Osborne CR, Izatt T, Kurdoglu A, Baker A, Koeman J, Barbacioru C, Sakarya O, De La Vega FM, Siddiqui A, Hoang L, Billings PR, Salhia B, Tolcher AW, Trent JM, Mousses S, Von Hoff D, Carpten JD.

Mol Cancer Ther. 2013 Jan;12(1):104-16. doi: 10.1158/1535-7163.MCT-12-0781. Epub 2012 Nov 19.

12.

Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events.

Liu J, Lee W, Jiang Z, Chen Z, Jhunjhunwala S, Haverty PM, Gnad F, Guan Y, Gilbert HN, Stinson J, Klijn C, Guillory J, Bhatt D, Vartanian S, Walter K, Chan J, Holcomb T, Dijkgraaf P, Johnson S, Koeman J, Minna JD, Gazdar AF, Stern HM, Hoeflich KP, Wu TD, Settleman J, de Sauvage FJ, Gentleman RC, Neve RM, Stokoe D, Modrusan Z, Seshagiri S, Shames DS, Zhang Z.

Genome Res. 2012 Dec;22(12):2315-27. doi: 10.1101/gr.140988.112. Epub 2012 Oct 2.

13.

Expression of the PTTG1 oncogene is associated with aggressive clear cell renal cell carcinoma.

Wondergem B, Zhang Z, Huang D, Ong CK, Koeman J, Hof DV, Petillo D, Ooi A, Anema J, Lane B, Kahnoski RJ, Furge KA, Teh BT.

Cancer Res. 2012 Sep 1;72(17):4361-71. doi: 10.1158/0008-5472.CAN-11-2330. Epub 2012 Jul 17.

14.

Hepatocyte growth factor (HGF) autocrine activation predicts sensitivity to MET inhibition in glioblastoma.

Xie Q, Bradley R, Kang L, Koeman J, Ascierto ML, Worschech A, De Giorgi V, Wang E, Kefene L, Su Y, Essenburg C, Kaufman DW, DeKoning T, Enter MA, O'Rourke TJ, Marincola FM, Vande Woude GF.

Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):570-5. doi: 10.1073/pnas.1119059109. Epub 2011 Dec 27.

15.

Late infective endocarditis of an atrial septal occluder device presenting as a cystic mass.

Walpot J, Amsel B, Rodrigus I, Pasteuning WH, Koeman J, Hokken R.

Echocardiography. 2011 Jul;28(6):E131-3. doi: 10.1111/j.1540-8175.2011.01387.x. Epub 2011 Jul 1.

PMID:
21718350
16.

Chromosomal amplification of leucine-rich repeat kinase-2 (LRRK2) is required for oncogenic MET signaling in papillary renal and thyroid carcinomas.

Looyenga BD, Furge KA, Dykema KJ, Koeman J, Swiatek PJ, Giordano TJ, West AB, Resau JH, Teh BT, MacKeigan JP.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1439-44. doi: 10.1073/pnas.1012500108. Epub 2011 Jan 10.

17.

Safety evaluation of pectin-derived acidic oligosaccharides (pAOS): genotoxicity and sub-chronic studies.

Garthoff JA, Heemskerk S, Hempenius RA, Lina BA, Krul CA, Koeman JH, Speijers GJ.

Regul Toxicol Pharmacol. 2010 Jun;57(1):31-42. doi: 10.1016/j.yrtph.2009.12.004. Epub 2009 Dec 21.

PMID:
20026148
18.

Met induces diverse mammary carcinomas in mice and is associated with human basal breast cancer.

Graveel CR, DeGroot JD, Su Y, Koeman J, Dykema K, Leung S, Snider J, Davies SR, Swiatek PJ, Cottingham S, Watson MA, Ellis MJ, Sigler RE, Furge KA, Vande Woude GF.

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12909-14. doi: 10.1073/pnas.0810403106. Epub 2009 Jun 30.

19.

Met amplification and tumor progression in Cdkn2a-deficient melanocytes.

Vanbrocklin MW, Robinson JP, Whitwam T, Guilbeault AR, Koeman J, Swiatek PJ, Vande Woude GF, Khoury JD, Holmen SL.

Pigment Cell Melanoma Res. 2009 Aug;22(4):454-60. doi: 10.1111/j.1755-148X.2009.00576.x. Epub 2009 Apr 29.

20.

Somatic pairing of chromosome 19 in renal oncocytoma is associated with deregulated EGLN2-mediated [corrected] oxygen-sensing response.

Koeman JM, Russell RC, Tan MH, Petillo D, Westphal M, Koelzer K, Metcalf JL, Zhang Z, Matsuda D, Dykema KJ, Houseman HL, Kort EJ, Furge LL, Kahnoski RJ, Richard S, Vieillefond A, Swiatek PJ, Teh BT, Ohh M, Furge KA.

PLoS Genet. 2008 Sep 5;4(9):e1000176. doi: 10.1371/journal.pgen.1000176. Erratum in: PLoS Genet. 2008 Jul;4(7). doi: 10.1371/annotation/7f57058f-cc02-45a6-bfab-a835619e3916.

21.

Identification of copy number alterations and its association with pathological features in clear cell and papillary RCC.

Matsuda D, Khoo SK, Massie A, Iwamura M, Chen J, Petillo D, Wondergem B, Avallone M, Kloostra SJ, Tan MH, Koeman J, Zhang Z, Kahnoski RJ; French Kidney Cancer Study Group, Baba S, Teh BT.

Cancer Lett. 2008 Dec 18;272(2):260-7. doi: 10.1016/j.canlet.2008.06.015. Epub 2008 Aug 3.

PMID:
18682315
22.

[No HIV test: a chance missed].

Koeman J, van den Berge M.

Ned Tijdschr Geneeskd. 2008 Mar 1;152(9):530; author reply 530. Dutch. No abstract available.

PMID:
18389893
23.

Equine biochemical multiple acyl-CoA dehydrogenase deficiency (MADD) as a cause of rhabdomyolysis.

Westermann CM, de Sain-van der Velden MG, van der Kolk JH, Berger R, Wijnberg ID, Koeman JP, Wanders RJ, Lenstra JA, Testerink N, Vaandrager AB, Vianey-Saban C, Acquaviva-Bourdain C, Dorland L.

Mol Genet Metab. 2007 Aug;91(4):362-9. Epub 2007 May 30.

PMID:
17540595
24.

Chromosome instability, chromosome transcriptome, and clonal evolution of tumor cell populations.

Gao C, Furge K, Koeman J, Dykema K, Su Y, Cutler ML, Werts A, Haak P, Vande Woude GF.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):8995-9000. Epub 2007 May 15.

25.

Detection of DNA copy number changes and oncogenic signaling abnormalities from gene expression data reveals MYC activation in high-grade papillary renal cell carcinoma.

Furge KA, Chen J, Koeman J, Swiatek P, Dykema K, Lucin K, Kahnoski R, Yang XJ, Teh BT.

Cancer Res. 2007 Apr 1;67(7):3171-6.

26.

Papillary fibroelastoma of the aortic valve: a rare cause of stroke.

Walpot J, Hans Pasteuning W, Koeman J, Volker P.

Eur J Echocardiogr. 2007 Dec;8(6):489-91. Epub 2006 Sep 7.

PMID:
16962379
27.

Dry gangrene of the extremities in calves associated with Salmonella dublin infection; a possible immune-mediated reaction.

Loeb E, Toussaint MJ, Rutten VP, Koeman JP.

J Comp Pathol. 2006 May;134(4):366-9. Epub 2006 May 16.

PMID:
16707135
28.

The Fell pony immunodeficiency syndrome also occurs in the Netherlands: a review and six cases.

Butler CM, Westermann CM, Koeman JP, Sloet van Oldruitenborgh-Oosterbaan MM.

Tijdschr Diergeneeskd. 2006 Feb 15;131(4):114-8. Review.

PMID:
16514970
29.

Proliferation and invasion: plasticity in tumor cells.

Gao CF, Xie Q, Su YL, Koeman J, Khoo SK, Gustafson M, Knudsen BS, Hay R, Shinomiya N, Vande Woude GF.

Proc Natl Acad Sci U S A. 2005 Jul 26;102(30):10528-33. Epub 2005 Jul 15.

30.

Spectral karyotyping of sarcomas and fibroblasts derived from Ink4a/Arf-deficient mice reveals chromosomal instability in vitro.

Robertson SA, Schoumans J, Looyenga BD, Yuhas JA, Zylstra CR, Koeman JM, Swiatek PJ, Teh BT, Williams BO.

Int J Oncol. 2005 Mar;26(3):629-34.

PMID:
15703817
31.

Androgenic activity in surface water samples detected using the AR-LUX assay: indications for mixture effects.

Blankvoort BM, Rodenburg RJ, Murk AJ, Koeman JH, Schilt R, Aarts JM.

Environ Toxicol Pharmacol. 2005 Feb;19(2):263-72. doi: 10.1016/j.etap.2004.08.004.

PMID:
21783485
32.

Activating Met mutations produce unique tumor profiles in mice with selective duplication of the mutant allele.

Graveel C, Su Y, Koeman J, Wang LM, Tessarollo L, Fiscella M, Birchmeier C, Swiatek P, Bronson R, Vande Woude G.

Proc Natl Acad Sci U S A. 2004 Dec 7;101(49):17198-203. Epub 2004 Nov 22.

33.

Developmental exposure to 4-hydroxy-2,3,3',4',5-pentachlorobiphenyl (4-OH-CB107): long-term effects on brain development, behavior, and brain stem auditory evoked potentials in rats.

Meerts IA, Lilienthal H, Hoving S, van den Berg JH, Weijers BM, Bergman A, Koeman JH, Brouwer A.

Toxicol Sci. 2004 Nov;82(1):207-18. Epub 2004 Aug 13.

PMID:
15310863
34.

Effects of in utero exposure to 4-hydroxy-2,3,3',4',5-pentachlorobiphenyl (4-OH-CB107) on developmental landmarks, steroid hormone levels, and female estrous cyclicity in rats.

Meerts IA, Hoving S, van den Berg JH, Weijers BM, Swarts HJ, van der Beek EM, Bergman A, Koeman JH, Brouwer A.

Toxicol Sci. 2004 Nov;82(1):259-67. Epub 2004 Aug 13.

PMID:
15310862
35.

Mast cells and eosinophils in feline allergic dermatitis: a qualitative and quantitative analysis.

Roosje PJ, Koeman JP, Thepen T, Willemse T.

J Comp Pathol. 2004 Jul;131(1):61-9.

PMID:
15144800
36.

Developmental competence of prepubertal and adult goat oocytes cultured in semi-defined media following laparoscopic recovery.

Koeman J, Keefer CL, Baldassarre H, Downey BR.

Theriogenology. 2003 Sep 15;60(5):879-89.

PMID:
12935865
37.

Activation of the Ah receptor by extracts of dietary herbal supplements, vegetables, and fruits.

Jeuken A, Keser BJ, Khan E, Brouwer A, Koeman J, Denison MS.

J Agric Food Chem. 2003 Aug 27;51(18):5478-87.

PMID:
12926901
38.

Estrogenic and esterase-inhibiting potency in rainwater in relation to pesticide concentrations, sampling season and location.

Hamers T, van den Brink PJ, Mos L, van der Linden SC, Legler J, Koeman JH, Murk AJ.

Environ Pollut. 2003;123(1):47-65.

PMID:
12663205
39.

Brain abscesses as a metastatic manifestation of strangles: symptomatology and the use of magnetic resonance imaging as a diagnostic aid.

Spoormakers TJ, Ensink JM, Goehring LS, Koeman JP, Ter Braake F, van der Vlugt-Meijer RH, van den Belt AJ.

Equine Vet J. 2003 Mar;35(2):146-51.

PMID:
12638790
40.

Botanical health products, positioning and requirements for effective and safe use.

Bast A, Chandler RF, Choy PC, Delmulle LM, Gruenwald J, Halkes SB, Keller K, Koeman JH, Peters P, Przyrembel H, de Ree EM, Renwick AG, Vermeer IT.

Environ Toxicol Pharmacol. 2002 Nov;12(4):195-211.

PMID:
21782639
41.

Embryotoxic potential of persistent organic pollutants extracted from tissues of guillemots (Uria aalge) from the Baltic Sea and the Atlantic Ocean.

de Roode DF, Gustavsson MB, Rantalainen AL, Klomp AV, Koeman JH, Bosveldt AT.

Environ Toxicol Chem. 2002 Nov;21(11):2401-11.

PMID:
12389920
42.

Lack of a distinct gradient in biomarker responses in small mammals collected at different distances from a highway.

Hamers T, Smit LA, Bosveld AT, van den Berg JH, Koeman JH, van Schooten FJ, Murk AJ.

Arch Environ Contam Toxicol. 2002 Oct;43(3):345-55.

PMID:
12202932
43.

Placental transfer of a hydroxylated polychlorinated biphenyl and effects on fetal and maternal thyroid hormone homeostasis in the rat.

Meerts IA, Assink Y, Cenijn PH, Van Den Berg JH, Weijers BM, Bergman A, Koeman JH, Brouwer A.

Toxicol Sci. 2002 Aug;68(2):361-71.

PMID:
12151632
44.

Detection of estrogenic activity in sediment-associated compounds using in vitro reporter gene assays.

Legler J, Dennekamp M, Vethaak AD, Brouwer A, Koeman JH, van der Burg B, Murk AJ.

Sci Total Environ. 2002 Jul 3;293(1-3):69-83.

PMID:
12109482
45.

The pro-oxidant chemistry of the natural antioxidants vitamin C, vitamin E, carotenoids and flavonoids.

Rietjens IM, Boersma MG, Haan Ld, Spenkelink B, Awad HM, Cnubben NH, van Zanden JJ, Woude Hv, Alink GM, Koeman JH.

Environ Toxicol Pharmacol. 2002 Jul;11(3-4):321-33.

PMID:
21782615
46.

Imposex induction in laboratory reared juvenile Buccinum undatum by tributyltin (TBT).

Mensink BP, Kralt H, Vethaak AD, Ten Hallers-Tjabbes CC, Koeman JH, van Hattum B, Boon JP.

Environ Toxicol Pharmacol. 2002 Jan;11(1):49-65.

PMID:
21782586
47.

Biological and chemical analysis of the toxic potency of pesticides in rainwater.

Hamers T, Smit MG, Murk AJ, Koeman JH.

Chemosphere. 2001 Nov;45(4-5):609-24.

PMID:
11680757
48.

ETAP changes.

Vermeulen NP, Seegal RF, Koeman JH.

Environ Toxicol Pharmacol. 2001 Jun;10(1-2):V. No abstract available.

PMID:
11382557
49.

Contribution of planar (0-1 ortho) and nonplanar (2-4 ortho) fractions of Aroclor 1260 to the induction of altered hepatic foci in female Sprague-Dawley rats.

van der Plas SA, Sundberg H, van den Berg H, Scheu G, Wester P, Jensen S, Bergman A, de Boer J, Koeman JH, Brouwer A.

Toxicol Appl Pharmacol. 2000 Dec 15;169(3):255-68.

PMID:
11133348
50.

The application of reporter gene assays for the determination of the toxic potency of diffuse air pollution.

Hamers T, van Schaardenburg, Felzel EC, Murk AJ, Koeman JH.

Sci Total Environ. 2000 Oct 30;262(1-2):159-74.

PMID:
11059851

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