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Items: 1 to 50 of 93

1.

The rhizobial type III effector ErnA confers the ability to form nodules in legumes.

Teulet A, Busset N, Fardoux J, Gully D, Chaintreuil C, Cartieaux F, Jauneau A, Comorge V, Okazaki S, Kaneko T, Gressent F, Nouwen N, Arrighi JF, Koebnik R, Mergaert P, Deslandes L, Giraud E.

Proc Natl Acad Sci U S A. 2019 Oct 7. pii: 201904456. doi: 10.1073/pnas.1904456116. [Epub ahead of print]

2.

Molecular Typing Reveals High Genetic Diversity of Xanthomonas translucens Strains Infecting Small-Grain Cereals in Iran.

Khojasteh M, Taghavi SM, Khodaygan P, Hamzehzarghani H, Chen G, Bragard C, Koebnik R, Osdaghi E.

Appl Environ Microbiol. 2019 Oct 1;85(20). pii: e01518-19. doi: 10.1128/AEM.01518-19. Print 2019 Oct 15.

PMID:
31420337
3.

A Pathovar of Xanthomonas oryzae Infecting Wild Grasses Provides Insight Into the Evolution of Pathogenicity in Rice Agroecosystems.

Lang JM, Pérez-Quintero AL, Koebnik R, DuCharme E, Sarra S, Doucoure H, Keita I, Ziegle J, Jacobs JM, Oliva R, Koita O, Szurek B, Verdier V, Leach JE.

Front Plant Sci. 2019 Apr 30;10:507. doi: 10.3389/fpls.2019.00507. eCollection 2019.

4.

A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane.

Gómez-Santos N, Glatter T, Koebnik R, Świątek-Połatyńska MA, Søgaard-Andersen L.

Nat Commun. 2019 Mar 25;10(1):1360. doi: 10.1038/s41467-019-09366-9.

5.

An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis.

Rache L, Blondin L, Flores C, Trujillo C, Szurek B, Restrepo S, Koebnik R, Bernal A, Vernière C.

Phytopathology. 2019 May;109(5):859-869. doi: 10.1094/PHYTO-06-18-0210-R. Epub 2019 Mar 25.

PMID:
30908143
6.

Addressing the New Global Threat of Xylella fastidiosa.

Almeida RPP, De La Fuente L, Koebnik R, Lopes JRS, Parnell S, Scherm H.

Phytopathology. 2019 Feb;109(2):172-174. doi: 10.1094/PHYTO-12-18-0488-FI.

PMID:
30721121
7.

Efficient enrichment cloning of TAL effector genes from Xanthomonas.

Tran TT, Doucouré H, Hutin M, Jaimes Niño LM, Szurek B, Cunnac S, Koebnik R.

MethodsX. 2018 Sep 4;5:1027-1032. doi: 10.1016/j.mex.2018.08.014. eCollection 2018.

8.

Functional and Genome Sequence-Driven Characterization of tal Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian Xanthomonas oryzae pv. oryzae Strains.

Doucouré H, Pérez-Quintero AL, Reshetnyak G, Tekete C, Auguy F, Thomas E, Koebnik R, Szurek B, Koita O, Verdier V, Cunnac S.

Front Microbiol. 2018 Aug 6;9:1657. doi: 10.3389/fmicb.2018.01657. eCollection 2018.

9.

Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean.

Chen NWG, Serres-Giardi L, Ruh M, Briand M, Bonneau S, Darrasse A, Barbe V, Gagnevin L, Koebnik R, Jacques MA.

BMC Genomics. 2018 Aug 13;19(1):606. doi: 10.1186/s12864-018-4975-4.

10.

Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice.

Tran TT, Pérez-Quintero AL, Wonni I, Carpenter SCD, Yu Y, Wang L, Leach JE, Verdier V, Cunnac S, Bogdanove AJ, Koebnik R, Hutin M, Szurek B.

PLoS Pathog. 2018 Jun 4;14(6):e1007092. doi: 10.1371/journal.ppat.1007092. eCollection 2018 Jun.

11.

Enterobacter cloacae, an Emerging Plant-Pathogenic Bacterium Affecting Chili Pepper Seedlings.

García-González T, Sáenz-Hidalgo HK, Silva-Rojas HV, Morales-Nieto C, Vancheva T, Koebnik R, Ávila-Quezada GD.

Plant Pathol J. 2018 Feb;34(1):1-10. doi: 10.5423/PPJ.OA.06.2017.0128. Epub 2018 Feb 1.

12.

High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero.

Osdaghi E, Forero Serna N, Bolot S, Fischer-Le Saux M, Jacques MA, Portier P, Carrère S, Koebnik R.

Genome Announc. 2017 Nov 30;5(48). pii: e01378-17. doi: 10.1128/genomeA.01378-17.

13.

Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens.

Garcia-Seco D, Chiapello M, Bracale M, Pesce C, Bagnaresi P, Dubois E, Moulin L, Vannini C, Koebnik R.

Sci Rep. 2017 Aug 31;7(1):10157. doi: 10.1038/s41598-017-10568-8.

14.

Comparative Genomics Identifies a Novel Conserved Protein, HpaT, in Proteobacterial Type III Secretion Systems that Do Not Possess the Putative Translocon Protein HrpF.

Pesce C, Jacobs JM, Berthelot E, Perret M, Vancheva T, Bragard C, Koebnik R.

Front Microbiol. 2017 Jun 26;8:1177. doi: 10.3389/fmicb.2017.01177. eCollection 2017.

15.

Effector Mimics and Integrated Decoys, the Never-Ending Arms Race between Rice and Xanthomonas oryzae.

Zuluaga P, Szurek B, Koebnik R, Kroj T, Morel JB.

Front Plant Sci. 2017 Mar 28;8:431. doi: 10.3389/fpls.2017.00431. eCollection 2017. Review.

16.

Characterization of the Xanthomonas translucens Complex Using Draft Genomes, Comparative Genomics, Phylogenetic Analysis, and Diagnostic LAMP Assays.

Langlois PA, Snelling J, Hamilton JP, Bragard C, Koebnik R, Verdier V, Triplett LR, Blom J, Tisserat NA, Leach JE.

Phytopathology. 2017 May;107(5):519-527. doi: 10.1094/PHYTO-08-16-0286-R. Epub 2017 Mar 28.

17.

Whole-Genome Sequences of Xanthomonas euvesicatoria Strains Clarify Taxonomy and Reveal a Stepwise Erosion of Type 3 Effectors.

Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R.

Front Plant Sci. 2016 Dec 9;7:1805. doi: 10.3389/fpls.2016.01805. eCollection 2016.

18.

Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases.

Hutin M, Césari S, Chalvon V, Michel C, Tran TT, Boch J, Koebnik R, Szurek B, Kroj T.

Plant J. 2016 Oct;88(1):43-55. doi: 10.1111/tpj.13231. Epub 2016 Aug 18.

19.

High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants.

Robène I, Bolot S, Pruvost O, Arlat M, Noël LD, Carrère S, Jacques MA, Koebnik R, Gagnevin L.

Genome Announc. 2016 Sep 1;4(5). pii: e00902-16. doi: 10.1128/genomeA.00902-16.

20.

Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors.

Blanvillain-Baufumé S, Reschke M, Solé M, Auguy F, Doucoure H, Szurek B, Meynard D, Portefaix M, Cunnac S, Guiderdoni E, Boch J, Koebnik R.

Plant Biotechnol J. 2017 Mar;15(3):306-317. doi: 10.1111/pbi.12613. Epub 2016 Dec 17.

21.

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas.

Jacques MA, Arlat M, Boulanger A, Boureau T, Carrère S, Cesbron S, Chen NW, Cociancich S, Darrasse A, Denancé N, Fischer-Le Saux M, Gagnevin L, Koebnik R, Lauber E, Noël LD, Pieretti I, Portier P, Pruvost O, Rieux A, Robène I, Royer M, Szurek B, Verdier V, Vernière C.

Annu Rev Phytopathol. 2016 Aug 4;54:163-87. doi: 10.1146/annurev-phyto-080615-100147. Epub 2016 Jan 1. Review.

PMID:
27296145
22.

AnnoTALE: bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences.

Grau J, Reschke M, Erkes A, Streubel J, Morgan RD, Wilson GG, Koebnik R, Boch J.

Sci Rep. 2016 Feb 15;6:21077. doi: 10.1038/srep21077.

23.

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome.

Roux B, Bolot S, Guy E, Denancé N, Lautier M, Jardinaud MF, Fischer-Le Saux M, Portier P, Jacques MA, Gagnevin L, Pruvost O, Lauber E, Arlat M, Carrère S, Koebnik R, Noël LD.

BMC Genomics. 2015 Nov 18;16:975. doi: 10.1186/s12864-015-2190-0.

24.

Draft Genome Sequence of Xanthomonas translucens pv. graminis Pathotype Strain CFBP 2053.

Pesce C, Bolot S, Berthelot E, Bragard C, Cunnac S, Fischer-Le Saux M, Portier P, Arlat M, Gagnevin L, Jacques MA, Noël LD, Carrère S, Koebnik R.

Genome Announc. 2015 Oct 8;3(5). pii: e01174-15. doi: 10.1128/genomeA.01174-15.

25.

A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.

Hutin M, Sabot F, Ghesquière A, Koebnik R, Szurek B.

Plant J. 2015 Nov;84(4):694-703. doi: 10.1111/tpj.13042.

26.

Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas.

Jacobs JM, Pesce C, Lefeuvre P, Koebnik R.

Front Plant Sci. 2015 Jun 16;6:431. doi: 10.3389/fpls.2015.00431. eCollection 2015.

27.

High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

Pesce C, Bolot S, Cunnac S, Portier P, Fischer-Le Saux M, Jacques MA, Gagnevin L, Arlat M, Noël LD, Carrère S, Bragard C, Koebnik R.

Genome Announc. 2015 Feb 12;3(1). pii: e01574-14. doi: 10.1128/genomeA.01574-14.

28.

Draft Genome Sequences of Two Xanthomonas vesicatoria Strains from the Balkan Peninsula.

Vancheva T, Bogatzevska N, Moncheva P, Lefeuvre P, Koebnik R.

Genome Announc. 2015 Feb 12;3(1). pii: e01558-14. doi: 10.1128/genomeA.01558-14.

29.

Draft Genome Sequences of Two Xanthomonas euvesicatoria Strains from the Balkan Peninsula.

Vancheva T, Lefeuvre P, Bogatzevska N, Moncheva P, Koebnik R.

Genome Announc. 2015 Feb 5;3(1). pii: e01528-14. doi: 10.1128/genomeA.01528-14.

30.

New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae.

Poulin L, Grygiel P, Magne M, Gagnevin L, Rodriguez-R LM, Forero Serna N, Zhao S, El Rafii M, Dao S, Tekete C, Wonni I, Koita O, Pruvost O, Verdier V, Vernière C, Koebnik R.

Appl Environ Microbiol. 2015 Jan;81(2):688-98. doi: 10.1128/AEM.02768-14. Epub 2014 Nov 14.

31.

First Report of Xanthomonas oryzae pv. oryzicola Causing Bacterial Leaf Streak of Rice in Uganda.

Afolabi O, Milan B, Poulin L, Ongom J, Szurek B, Koebnik R, Silue D.

Plant Dis. 2014 Nov;98(11):1579. doi: 10.1094/PDIS-07-14-0745-PDN.

PMID:
30699834
32.

Draft Genome Sequence of the Flagellated Xanthomonas fuscans subsp. fuscans Strain CFBP 4884.

Indiana A, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Portier P, Darrasse A, Jacques MA.

Genome Announc. 2014 Sep 25;2(5). pii: e00966-14. doi: 10.1128/genomeA.00966-14.

33.

Confirmation of Bacterial Leaf Streak Caused by Xanthomonas oryzae pv. oryzicola on Rice in Madagascar.

Poulin L, Raveloson H, Sester M, Raboin LM, Silué D, Koebnik R, Szurek B.

Plant Dis. 2014 Oct;98(10):1423. doi: 10.1094/PDIS-02-14-0132-PDN.

PMID:
30703983
34.

First Report of Xanthomonas oryzae pv. oryzicola Causing Bacterial Leaf Streak of Rice in Burundi.

Afolabi O, Milan B, Amoussa R, Koebnik R, Poulin L, Szurek B, Habarugira G, Bigirimana J, Silue D.

Plant Dis. 2014 Oct;98(10):1426. doi: 10.1094/PDIS-05-14-0504-PDN.

PMID:
30703943
35.

Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369.

Gagnevin L, Bolot S, Gordon JL, Pruvost O, Vernière C, Robène I, Arlat M, Noël LD, Carrère S, Jacques MA, Koebnik R.

Genome Announc. 2014 Jul 31;2(4). pii: e00727-14. doi: 10.1128/genomeA.00727-14.

36.

Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers.

Trujillo CA, Arias-Rojas N, Poulin L, Medina CA, Tapiero A, Restrepo S, Koebnik R, Bernal AJ.

BMC Microbiol. 2014 Jun 19;14:161. doi: 10.1186/1471-2180-14-161.

37.

A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage.

Pruvost O, Magne M, Boyer K, Leduc A, Tourterel C, Drevet C, Ravigné V, Gagnevin L, Guérin F, Chiroleu F, Koebnik R, Verdier V, Vernière C.

PLoS One. 2014 Jun 4;9(6):e98129. doi: 10.1371/journal.pone.0098129. eCollection 2014.

38.

The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles.

Bahar O, Pruitt R, Luu DD, Schwessinger B, Daudi A, Liu F, Ruan R, Fontaine-Bodin L, Koebnik R, Ronald P.

PeerJ. 2014 Jan 7;2:e242. doi: 10.7717/peerj.242. eCollection 2014.

39.

High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.

Darrasse A, Bolot S, Serres-Giardi L, Charbit E, Boureau T, Fisher-Le Saux M, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Carrère S, Jacques MA.

Genome Announc. 2013 Dec 12;1(6). pii: e01036-13. doi: 10.1128/genomeA.01036-13.

40.

High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836.

Jacques MA, Bolot S, Charbit E, Darrasse A, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Portier P, Carrère S, Boureau T.

Genome Announc. 2013 Dec 12;1(6). pii: e01035-13. doi: 10.1128/genomeA.01035-13.

41.

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

Arrieta-Ortiz ML, Rodríguez-R LM, Pérez-Quintero Á, Poulin L, Díaz AC, Arias Rojas N, Trujillo C, Restrepo Benavides M, Bart R, Boch J, Boureau T, Darrasse A, David P, Dugé de Bernonville T, Fontanilla P, Gagnevin L, Guérin F, Jacques MA, Lauber E, Lefeuvre P, Medina C, Medina E, Montenegro N, Muñoz Bodnar A, Noël LD, Ortiz Quiñones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Robène-Soustrade I, Ryan RP, Tabima J, Urrego Morales OG, Vernière C, Carrere S, Verdier V, Szurek B, Restrepo S, López C, Koebnik R, Bernal A.

PLoS One. 2013 Nov 22;8(11):e79704. doi: 10.1371/journal.pone.0079704. eCollection 2013.

42.

Analysis of Xanthomonas oryzae pv. oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity.

Wonni I, Cottyn B, Detemmerman L, Dao S, Ouedraogo L, Sarra S, Tekete C, Poussier S, Corral R, Triplett L, Koita O, Koebnik R, Leach J, Szurek B, Maes M, Verdier V.

Phytopathology. 2014 May;104(5):520-31. doi: 10.1094/PHYTO-07-13-0213-R.

43.

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads.

Darrasse A, Carrère S, Barbe V, Boureau T, Arrieta-Ortiz ML, Bonneau S, Briand M, Brin C, Cociancich S, Durand K, Fouteau S, Gagnevin L, Guérin F, Guy E, Indiana A, Koebnik R, Lauber E, Munoz A, Noël LD, Pieretti I, Poussier S, Pruvost O, Robène-Soustrade I, Rott P, Royer M, Serres-Giardi L, Szurek B, van Sluys MA, Verdier V, Vernière C, Arlat M, Manceau C, Jacques MA.

BMC Genomics. 2013 Nov 6;14:761. doi: 10.1186/1471-2164-14-761.

44.

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides.

Royer M, Koebnik R, Marguerettaz M, Barbe V, Robin GP, Brin C, Carrere S, Gomez C, Hügelland M, Völler GH, Noëll J, Pieretti I, Rausch S, Verdier V, Poussier S, Rott P, Süssmuth RD, Cociancich S.

BMC Genomics. 2013 Sep 27;14:658. doi: 10.1186/1471-2164-14-658.

45.

Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642.

Bolot S, Munoz Bodnar A, Cunnac S, Ortiz E, Szurek B, Noël LD, Arlat M, Jacques MA, Gagnevin L, Portier P, Fischer-Le Saux M, Carrere S, Koebnik R.

Genome Announc. 2013 Aug 29;1(4). pii: e00679-13. doi: 10.1128/genomeA.00679-13.

46.

High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

Cunnac S, Bolot S, Forero Serna N, Ortiz E, Szurek B, Noël LD, Arlat M, Jacques MA, Gagnevin L, Carrere S, Nicole M, Koebnik R.

Genome Announc. 2013 Aug 29;1(4). pii: e00674-13. doi: 10.1128/genomeA.00674-13.

47.

Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae.

Streubel J, Pesce C, Hutin M, Koebnik R, Boch J, Szurek B.

New Phytol. 2013 Nov;200(3):808-19. doi: 10.1111/nph.12411. Epub 2013 Jul 24.

48.

An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains.

Pérez-Quintero AL, Rodriguez-R LM, Dereeper A, López C, Koebnik R, Szurek B, Cunnac S.

PLoS One. 2013 Jul 15;8(7):e68464. doi: 10.1371/journal.pone.0068464. Print 2013.

49.

Comparative proteomics reveal new HrpX-regulated proteins of Xanthomonas oryzae pv. oryzae.

Robin GP, Ortiz E, Szurek B, Brizard JP, Koebnik R.

J Proteomics. 2014 Jan 31;97:256-64. doi: 10.1016/j.jprot.2013.04.010. Epub 2013 Apr 18.

PMID:
23603630
50.

Identification of non-TAL effectors in Xanthomonas oryzae pv. oryzae Chinese strain 13751 and analysis of their role in the bacterial virulence.

Zhao S, Mo WL, Wu F, Tang W, Tang JL, Szurek B, Verdier V, Koebnik R, Feng JX.

World J Microbiol Biotechnol. 2013 Apr;29(4):733-44. doi: 10.1007/s11274-012-1229-5. Epub 2013 Jan 8.

PMID:
23296915

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