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Items: 9


Measuring Cluster Stability in a Large Scale Phylogenetic Analysis of Functional Genes in Metagenomes Using pplacer.

Land TA, Fizzano P, Kodner RB.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Mar-Apr;13(2):341-9. doi: 10.1109/TCBB.2015.2446470.


Identification of G protein-coupled receptor signaling pathway proteins in marine diatoms using comparative genomics.

Port JA, Parker MS, Kodner RB, Wallace JC, Armbrust EV, Faustman EM.

BMC Genomics. 2013 Jul 24;14:503. doi: 10.1186/1471-2164-14-503.


Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability.

Marchetti A, Schruth DM, Durkin CA, Parker MS, Kodner RB, Berthiaume CT, Morales R, Allen AE, Armbrust EV.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):E317-25. doi: 10.1073/pnas.1118408109. Epub 2012 Jan 18.


pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.

Matsen FA, Kodner RB, Armbrust EV.

BMC Bioinformatics. 2010 Oct 30;11:538. doi: 10.1186/1471-2105-11-538.


Large spinose microfossils in Ediacaran rocks as resting stages of early animals.

Cohen PA, Knoll AH, Kodner RB.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6519-24. doi: 10.1073/pnas.0902322106. Epub 2009 Apr 6.


Sterols in a unicellular relative of the metazoans.

Kodner RB, Summons RE, Pearson A, King N, Knoll AH.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9897-902. doi: 10.1073/pnas.0803975105. Epub 2008 Jul 15.


Sterols in red and green algae: quantification, phylogeny, and relevance for the interpretation of geologic steranes.

Kodner RB, Pearson A, Summons RE, Knoll AH.

Geobiology. 2008 Aug;6(4):411-20. doi: 10.1111/j.1472-4669.2008.00167.x. Epub 2008 Jul 9.


Glomalean fungi from the Ordovician.

Redecker D, Kodner R, Graham LE.

Science. 2000 Sep 15;289(5486):1920-1.

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