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Items: 45

1.

A Single-Cell Transcriptome Atlas of the Mouse Glomerulus.

Karaiskos N, Rahmatollahi M, Boltengagen A, Liu H, Hoehne M, Rinschen M, Schermer B, Benzing T, Rajewsky N, Kocks C, Kann M, Müller RU.

J Am Soc Nephrol. 2018 Aug;29(8):2060-2068. doi: 10.1681/ASN.2018030238. Epub 2018 May 24.

2.

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics.

Plass M, Solana J, Wolf FA, Ayoub S, Misios A, Glažar P, Obermayer B, Theis FJ, Kocks C, Rajewsky N.

Science. 2018 May 25;360(6391). pii: eaaq1723. doi: 10.1126/science.aaq1723. Epub 2018 Apr 19.

PMID:
29674432
3.

Single-Molecule Fluorescence In Situ Hybridization (FISH) of Circular RNA CDR1as.

Kocks C, Boltengagen A, Piwecka M, Rybak-Wolf A, Rajewsky N.

Methods Mol Biol. 2018;1724:77-96. doi: 10.1007/978-1-4939-7562-4_7.

PMID:
29322442
4.

Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection.

Wyler E, Menegatti J, Franke V, Kocks C, Boltengagen A, Hennig T, Theil K, Rutkowski A, Ferrai C, Baer L, Kermas L, Friedel C, Rajewsky N, Akalin A, Dölken L, Grässer F, Landthaler M.

Genome Biol. 2017 Oct 31;18(1):209. doi: 10.1186/s13059-017-1329-5.

5.

The Drosophila embryo at single-cell transcriptome resolution.

Karaiskos N, Wahle P, Alles J, Boltengagen A, Ayoub S, Kipar C, Kocks C, Rajewsky N, Zinzen RP.

Science. 2017 Oct 13;358(6360):194-199. doi: 10.1126/science.aan3235. Epub 2017 Aug 31.

PMID:
28860209
6.

Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function.

Piwecka M, Glažar P, Hernandez-Miranda LR, Memczak S, Wolf SA, Rybak-Wolf A, Filipchyk A, Klironomos F, Cerda Jara CA, Fenske P, Trimbuch T, Zywitza V, Plass M, Schreyer L, Ayoub S, Kocks C, Kühn R, Rosenmund C, Birchmeier C, Rajewsky N.

Science. 2017 Sep 22;357(6357). pii: eaam8526. doi: 10.1126/science.aam8526. Epub 2017 Aug 10.

PMID:
28798046
7.

Cell fixation and preservation for droplet-based single-cell transcriptomics.

Alles J, Karaiskos N, Praktiknjo SD, Grosswendt S, Wahle P, Ruffault PL, Ayoub S, Schreyer L, Boltengagen A, Birchmeier C, Zinzen R, Kocks C, Rajewsky N.

BMC Biol. 2017 May 19;15(1):44. doi: 10.1186/s12915-017-0383-5.

8.

Advances in Variable Rate Technology Application in Potato in The Netherlands.

Kempenaar C, Been T, Booij J, van Evert F, Michielsen JM, Kocks C.

Potato Res. 2017;60(3):295-305. doi: 10.1007/s11540-018-9357-4. Epub 2018 Feb 19.

9.

Trehalose biosynthesis promotes Pseudomonas aeruginosa pathogenicity in plants.

Djonović S, Urbach JM, Drenkard E, Bush J, Feinbaum R, Ausubel JL, Traficante D, Risech M, Kocks C, Fischbach MA, Priebe GP, Ausubel FM.

PLoS Pathog. 2013 Mar;9(3):e1003217. doi: 10.1371/journal.ppat.1003217. Epub 2013 Mar 7.

10.

Circular RNAs are a large class of animal RNAs with regulatory potency.

Memczak S, Jens M, Elefsinioti A, Torti F, Krueger J, Rybak A, Maier L, Mackowiak SD, Gregersen LH, Munschauer M, Loewer A, Ziebold U, Landthaler M, Kocks C, le Noble F, Rajewsky N.

Nature. 2013 Mar 21;495(7441):333-8. doi: 10.1038/nature11928. Epub 2013 Feb 27.

PMID:
23446348
11.

Leadless pacing using induction technology: impact of pulse shape and geometric factors on pacing efficiency.

Wieneke H, Rickers S, Velleuer J, Bruck G, Bai Z, Kocks C, Grandjean PA, Lenihan T, Jung P, Erbel R, Prinzen FW, Kisker E.

Europace. 2013 Mar;15(3):453-9. doi: 10.1093/europace/eus308. Epub 2012 Oct 1.

PMID:
23027843
12.

Genes involved in the evolution of herbivory by a leaf-mining, Drosophilid fly.

Whiteman NK, Gloss AD, Sackton TB, Groen SC, Humphrey PT, Lapoint RT, Sønderby IE, Halkier BA, Kocks C, Ausubel FM, Pierce NE.

Genome Biol Evol. 2012;4(9):900-16. doi: 10.1093/gbe/evs063. Epub 2012 Jul 19.

13.

Phagocytosis of bacterial pathogens.

Chung YS, Kocks C.

Fly (Austin). 2012 Jan-Mar;6(1):21-5. doi: 10.4161/fly.18497. Epub 2012 Jan 1.

14.

Pseudomonas aeruginosa RhlR is required to neutralize the cellular immune response in a Drosophila melanogaster oral infection model.

Limmer S, Haller S, Drenkard E, Lee J, Yu S, Kocks C, Ausubel FM, Ferrandon D.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17378-83. doi: 10.1073/pnas.1114907108. Epub 2011 Oct 10.

15.

Recognition of pathogenic microbes by the Drosophila phagocytic pattern recognition receptor Eater.

Chung YS, Kocks C.

J Biol Chem. 2011 Jul 29;286(30):26524-32. doi: 10.1074/jbc.M110.214007. Epub 2011 May 25. Erratum in: J Biol Chem. 2011 Nov 11;286(45):39674.

16.

Relative roles of the cellular and humoral responses in the Drosophila host defense against three gram-positive bacterial infections.

Nehme NT, Quintin J, Cho JH, Lee J, Lafarge MC, Kocks C, Ferrandon D.

PLoS One. 2011 Mar 3;6(3):e14743. doi: 10.1371/journal.pone.0014743.

17.

Cofilin regulator 14-3-3zeta is an evolutionarily conserved protein required for phagocytosis and microbial resistance.

Ulvila J, Vanha-aho LM, Kleino A, Vähä-Mäkilä M, Vuoksio M, Eskelinen S, Hultmark D, Kocks C, Hallman M, Parikka M, Rämet M.

J Leukoc Biol. 2011 May;89(5):649-59. doi: 10.1189/jlb.0410195. Epub 2011 Jan 4.

PMID:
21208897
18.

Adapter protein SH2-Bbeta stimulates actin-based motility of Listeria monocytogenes in a vasodilator-stimulated phosphoprotein (VASP)-dependent fashion.

Diakonova M, Helfer E, Seveau S, Swanson JA, Kocks C, Rui L, Carlier MF, Carter-Su C.

Infect Immun. 2007 Jul;75(7):3581-93. Epub 2007 Apr 23.

19.

A systems biology analysis of the Drosophila phagosome.

Stuart LM, Boulais J, Charriere GM, Hennessy EJ, Brunet S, Jutras I, Goyette G, Rondeau C, Letarte S, Huang H, Ye P, Morales F, Kocks C, Bader JS, Desjardins M, Ezekowitz RA.

Nature. 2007 Jan 4;445(7123):95-101. Epub 2006 Dec 6.

PMID:
17151602
20.

Double-stranded RNA is internalized by scavenger receptor-mediated endocytosis in Drosophila S2 cells.

Ulvila J, Parikka M, Kleino A, Sormunen R, Ezekowitz RA, Kocks C, Rämet M.

J Biol Chem. 2006 May 19;281(20):14370-5. Epub 2006 Mar 10.

21.

Eater, a transmembrane protein mediating phagocytosis of bacterial pathogens in Drosophila.

Kocks C, Cho JH, Nehme N, Ulvila J, Pearson AM, Meister M, Strom C, Conto SL, Hetru C, Stuart LM, Stehle T, Hoffmann JA, Reichhart JM, Ferrandon D, Rämet M, Ezekowitz RA.

Cell. 2005 Oct 21;123(2):335-46.

22.

How VASP enhances actin-based motility.

Samarin S, Romero S, Kocks C, Didry D, Pantaloni D, Carlier MF.

J Cell Biol. 2003 Oct 13;163(1):131-42.

23.

Functional proteomics of the active cysteine protease content in Drosophila S2 cells.

Kocks C, Maehr R, Overkleeft HS, Wang EW, Iyer LK, Lennon-Dumenil AM, Ploegh HL, Kessler BM.

Mol Cell Proteomics. 2003 Nov;2(11):1188-97. Epub 2003 Sep 16.

24.

Listeria protein ActA mimics WASp family proteins: it activates filament barbed end branching by Arp2/3 complex.

Boujemaa-Paterski R, Gouin E, Hansen G, Samarin S, Le Clainche C, Didry D, Dehoux P, Cossart P, Kocks C, Carlier MF, Pantaloni D.

Biochemistry. 2001 Sep 25;40(38):11390-404.

PMID:
11560487
26.

Actin and phosphoinositide binding by the ActA protein of the bacterial pathogen Listeria monocytogenes.

Cicchetti G, Maurer P, Wagener P, Kocks C.

J Biol Chem. 1999 Nov 19;274(47):33616-26.

27.

Generation of Cre recombinase-specific monoclonal antibodies, able to characterize the pattern of Cre expression in cre-transgenic mouse strains.

Schwenk F, Sauer B, Kukoc N, Hoess R, Müller W, Kocks C, Kühn R, Rajewsky K.

J Immunol Methods. 1997 Sep 24;207(2):203-12.

PMID:
9368647
28.
29.
30.
31.

The actin-based motility of the facultative intracellular pathogen Listeria monocytogenes.

Cossart P, Kocks C.

Mol Microbiol. 1994 Aug;13(3):395-402. Review.

PMID:
7997157
32.

Intracellular motility. Profilin puts pathogens on the actin drive.

Kocks C.

Curr Biol. 1994 May 1;4(5):465-8. Review.

PMID:
7922367
33.

Molecular and genetic determinants of the Listeria monocytogenes infectious process.

Sheehan B, Kocks C, Dramsi S, Gouin E, Klarsfeld AD, Mengaud J, Cossart P.

Curr Top Microbiol Immunol. 1994;192:187-216. Review. No abstract available.

PMID:
7859506
34.

Induction of phagocytic behaviour in human epithelial cells by Escherichia coli cytotoxic necrotizing factor type 1.

Falzano L, Fiorentini C, Donelli G, Michel E, Kocks C, Cossart P, Cabanié L, Oswald E, Boquet P.

Mol Microbiol. 1993 Sep;9(6):1247-54.

PMID:
7934938
37.

Polarized distribution of Listeria monocytogenes surface protein ActA at the site of directional actin assembly.

Kocks C, Hellio R, Gounon P, Ohayon H, Cossart P.

J Cell Sci. 1993 Jul;105 ( Pt 3):699-710.

38.
39.

L. monocytogenes-induced actin assembly requires the actA gene product, a surface protein.

Kocks C, Gouin E, Tabouret M, Berche P, Ohayon H, Cossart P.

Cell. 1992 Feb 7;68(3):521-31.

PMID:
1739966
40.

Nucleotide sequence of the lecithinase operon of Listeria monocytogenes and possible role of lecithinase in cell-to-cell spread.

Vazquez-Boland JA, Kocks C, Dramsi S, Ohayon H, Geoffroy C, Mengaud J, Cossart P.

Infect Immun. 1992 Jan;60(1):219-30.

41.

Stable expression and somatic hypermutation of antibody V regions in B-cell developmental pathways.

Kocks C, Rajewsky K.

Annu Rev Immunol. 1989;7:537-59. Review. No abstract available.

PMID:
2653375
42.

Stepwise intraclonal maturation of antibody affinity through somatic hypermutation.

Kocks C, Rajewsky K.

Proc Natl Acad Sci U S A. 1988 Nov;85(21):8206-10.

43.

Timing, genetic requirements and functional consequences of somatic hypermutation during B-cell development.

Allen D, Cumano A, Dildrop R, Kocks C, Rajewsky K, Rajewsky N, Roes J, Sablitzky F, Siekevitz M.

Immunol Rev. 1987 Apr;96:5-22. Review.

PMID:
3298009
44.
45.

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