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Items: 12


rawDiag: An R Package Supporting Rational LC-MS Method Optimization for Bottom-up Proteomics.

Trachsel C, Panse C, Kockmann T, Wolski WE, Grossmann J, Schlapbach R.

J Proteome Res. 2018 Aug 3;17(8):2908-2914. doi: 10.1021/acs.jproteome.8b00173. Epub 2018 Jul 24.


Humidity-regulated CLCA2 protects the epidermis from hyperosmotic stress.

Seltmann K, Meyer M, Sulcova J, Kockmann T, Wehkamp U, Weidinger S, Auf dem Keller U, Werner S.

Sci Transl Med. 2018 May 9;10(440). pii: eaao4650. doi: 10.1126/scitranslmed.aao4650.


A druggable secretory protein maturase of Toxoplasma essential for invasion and egress.

Dogga SK, Mukherjee B, Jacot D, Kockmann T, Molino L, Hammoudi PM, Hartkoorn RC, Hehl AB, Soldati-Favre D.

Elife. 2017 Sep 12;6. pii: e27480. doi: 10.7554/eLife.27480.


Large-Scale Quantitative Proteomics Identifies the Ubiquitin Ligase Nedd4-1 as an Essential Regulator of Liver Regeneration.

Bachofner M, Speicher T, Bogorad RL, Muzumdar S, Derrer CP, Hürlimann F, Böhm F, Nanni P, Kockmann T, Kachaylo E, Meyer M, Padrissa-Altés S, Graf R, Anderson DG, Koteliansky V, Auf dem Keller U, Werner S.

Dev Cell. 2017 Sep 25;42(6):616-625.e8. doi: 10.1016/j.devcel.2017.07.025. Epub 2017 Sep 7.


Autocrine and Paracrine Regulation of Keratinocyte Proliferation through a Novel Nrf2-IL-36γ Pathway.

Kurinna S, Muzumdar S, Köhler UA, Kockmann T, Auf dem Keller U, Schäfer M, Werner S.

J Immunol. 2016 Jun 1;196(11):4663-70. doi: 10.4049/jimmunol.1501447. Epub 2016 Apr 25.


Targeted proteomics coming of age - SRM, PRM and DIA performance evaluated from a core facility perspective.

Kockmann T, Trachsel C, Panse C, Wahlander A, Selevsek N, Grossmann J, Wolski WE, Schlapbach R.

Proteomics. 2016 Aug;16(15-16):2183-92. doi: 10.1002/pmic.201500502. Epub 2016 Jun 8.


Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions.

Schlage P, Kockmann T, Sabino F, Kizhakkedathu JN, Auf dem Keller U.

Mol Cell Proteomics. 2015 Dec;14(12):3234-46. doi: 10.1074/mcp.M115.053520. Epub 2015 Oct 16.


Monitoring matrix metalloproteinase activity at the epidermal-dermal interface by SILAC-iTRAQ-TAILS.

Schlage P, Kockmann T, Kizhakkedathu JN, auf dem Keller U.

Proteomics. 2015 Jul;15(14):2491-502. doi: 10.1002/pmic.201400627. Epub 2015 May 15.


In vivo assessment of protease dynamics in cutaneous wound healing by degradomics analysis of porcine wound exudates.

Sabino F, Hermes O, Egli FE, Kockmann T, Schlage P, Croizat P, Kizhakkedathu JN, Smola H, auf dem Keller U.

Mol Cell Proteomics. 2015 Feb;14(2):354-70. doi: 10.1074/mcp.M114.043414. Epub 2014 Dec 16.


Quantitative in vivo analysis of chromatin binding of Polycomb and Trithorax group proteins reveals retention of ASH1 on mitotic chromatin.

Steffen PA, Fonseca JP, Gänger C, Dworschak E, Kockmann T, Beisel C, Ringrose L.

Nucleic Acids Res. 2013 May 1;41(10):5235-50. doi: 10.1093/nar/gkt217. Epub 2013 Apr 10.


The BET protein FSH functionally interacts with ASH1 to orchestrate global gene activity in Drosophila.

Kockmann T, Gerstung M, Schlumpf T, Xhinzhou Z, Hess D, Beerenwinkel N, Beisel C, Paro R.

Genome Biol. 2013 Feb 25;14(2):R18. doi: 10.1186/gb-2013-14-2-r18.


Binding profiles of chromatin-modifying proteins are predictive for transcriptional activity and promoter-proximal pausing.

Sakoparnig T, Kockmann T, Paro R, Beisel C, Beerenwinkel N.

J Comput Biol. 2012 Feb;19(2):126-38. doi: 10.1089/cmb.2011.0258.


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