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Genome Evolution in Arabideae was Marked by Frequent Centromere Repositioning.

Mandáková T, Hloušková P, Koch MA, Lysak MA.

Plant Cell. 2020 Jan 9. pii: tpc.00557.2019. doi: 10.1105/tpc.19.00557. [Epub ahead of print]


Zahora, a new monotypic genus from tribe Brassiceae (Brassicaceae) endemic to the Moroccan Sahara.

Koch MA, Lemmel C.

PhytoKeys. 2019 Dec 5;135:119-131. doi: 10.3897/phytokeys.135.46946. eCollection 2019.


B cell receptor and Toll-like receptor signaling coordinate to control distinct B-1 responses to both self and the microbiota.

Kreuk LS, Koch MA, Slayden LC, Lind NA, Chu S, Savage HP, Kantor AB, Baumgarth N, Barton GM.

Elife. 2019 Aug 21;8. pii: e47015. doi: 10.7554/eLife.47015.


Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation.

Kiefer C, Willing EM, Jiao WB, Sun H, Piednoël M, Hümann U, Hartwig B, Koch MA, Schneeberger K.

Nat Plants. 2019 Aug;5(8):846-855. doi: 10.1038/s41477-019-0486-9. Epub 2019 Jul 29.


Temporal patterns of diversification in Brassicaceae demonstrate decoupling of rate shifts and mesopolyploidization events.

Huang XC, German DA, Koch MA.

Ann Bot. 2020 Jan 8;125(1):29-47. doi: 10.1093/aob/mcz123.


Efficient determination of axon number in the optic nerve: A stereological approach.

Koschade SE, Koch MA, Braunger BM, Tamm ER.

Exp Eye Res. 2019 Sep;186:107710. doi: 10.1016/j.exer.2019.107710. Epub 2019 Jun 27.


Akkermansia muciniphila induces intestinal adaptive immune responses during homeostasis.

Ansaldo E, Slayden LC, Ching KL, Koch MA, Wolf NK, Plichta DR, Brown EM, Graham DB, Xavier RJ, Moon JJ, Barton GM.

Science. 2019 Jun 21;364(6446):1179-1184. doi: 10.1126/science.aaw7479.


Sex Bias in Sepsis.

Koch MA.

Cell Host Microbe. 2018 Nov 14;24(5):613-615. doi: 10.1016/j.chom.2018.10.014.


The genomic basis of adaptation to calcareous and siliceous soils in Arabidopsis lyrata.

Guggisberg A, Liu X, Suter L, Mansion G, Fischer MC, Fior S, Roumet M, Kretzschmar R, Koch MA, Widmer A.

Mol Ecol. 2018 Dec;27(24):5088-5103. doi: 10.1111/mec.14930. Epub 2018 Dec 10.


The plant model system Arabidopsis set in an evolutionary, systematic, and spatio-temporal context.

Koch MA.

J Exp Bot. 2019 Jan 1;70(1):55-67. doi: 10.1093/jxb/ery340.


Restriction associated DNA-genotyping at multiple spatial scales in Arabidopsis lyrata reveals signatures of pathogen-mediated selection.

Buckley J, Holub EB, Koch MA, Vergeer P, Mable BK.

BMC Genomics. 2018 Jun 27;19(1):496. doi: 10.1186/s12864-018-4806-7.


Ginkgo biloba's footprint of dynamic Pleistocene history dates back only 390,000 years ago.

Hohmann N, Wolf EM, Rigault P, Zhou W, Kiefer M, Zhao Y, Fu CX, Koch MA.

BMC Genomics. 2018 Apr 27;19(1):299. doi: 10.1186/s12864-018-4673-2.


Stillbirth, Inflammatory Markers, and Obesity: Results from the Stillbirth Collaborative Research Network.

Harrison MS, Thorsten VR, Dudley DJ, Parker CB, Koch MA, Hogue CJR, Stoll BJ, Silver RM, Varner MW, Pinar MH, Coustan DR, Saade GR, Bukowski RK, Conway DL, Willinger M, Reddy UM, Goldenberg RL.

Am J Perinatol. 2018 Sep;35(11):1071-1078. doi: 10.1055/s-0038-1639340. Epub 2018 Apr 2.


Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses.

Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC.

Am J Bot. 2018 Mar;105(3):463-469. doi: 10.1002/ajb2.1040. Epub 2018 Mar 25.


Predictors of sleep-disordered breathing in pregnancy.

Louis JM, Koch MA, Reddy UM, Silver RM, Parker CB, Facco FL, Redline S, Nhan-Chang CL, Chung JH, Pien GW, Basner RC, Grobman WA, Wing DA, Simhan HN, Haas DM, Mercer BM, Parry S, Mobley D, Carper B, Saade GR, Schubert FP, Zee PC.

Am J Obstet Gynecol. 2018 May;218(5):521.e1-521.e12. doi: 10.1016/j.ajog.2018.01.031. Epub 2018 Feb 2.


First heating measurements of endovascular stents in magnetic particle imaging.

Wegner F, Friedrich T, Panagiotopoulos N, Valmaa S, Goltz JP, Vogt FM, Koch MA, Buzug TM, Barkhausen J, Haegele J.

Phys Med Biol. 2018 Feb 9;63(4):045005. doi: 10.1088/1361-6560/aaa79c. No abstract available.


Early-Mid Pleistocene genetic differentiation and range expansions as exemplified by invasive Eurasian Bunias orientalis (Brassicaceae) indicates the Caucasus as key region.

Koch MA, Michling F, Walther A, Huang XC, Tewes L, Müller C.

Sci Rep. 2017 Dec 1;7(1):16764. doi: 10.1038/s41598-017-17085-8.


Cryptic gene pools in the Hypericum perforatum-H. maculatum complex: diploid persistence versus trapped polyploid melting.

Scheriau CL, Nuerk NM, Sharbel TF, Koch MA.

Ann Bot. 2017 Nov 28;120(6):955-966. doi: 10.1093/aob/mcx110.


Database Taxonomics as Key to Modern Plant Biology.

Koch MA, German DA, Kiefer M, Franzke A.

Trends Plant Sci. 2018 Jan;23(1):4-6. doi: 10.1016/j.tplants.2017.10.005. Epub 2017 Nov 13.


Molecular Resources from Transcriptomes in the Brassicaceae Family.

Lopez L, Wolf EM, Pires JC, Edger PP, Koch MA.

Front Plant Sci. 2017 Aug 29;8:1488. doi: 10.3389/fpls.2017.01488. eCollection 2017.


Altered fetal growth, placental abnormalities, and stillbirth.

Bukowski R, Hansen NI, Pinar H, Willinger M, Reddy UM, Parker CB, Silver RM, Dudley DJ, Stoll BJ, Saade GR, Koch MA, Hogue C, Varner MW, Conway DL, Coustan D, Goldenberg RL; Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) Stillbirth Collaborative Research Network (SCRN).

PLoS One. 2017 Aug 18;12(8):e0182874. doi: 10.1371/journal.pone.0182874. eCollection 2017.


Fetal death certificate data quality: a tale of two U.S. counties.

Christiansen-Lindquist L, Silver RM, Parker CB, Dudley DJ, Koch MA, Reddy UM, Saade GR, Goldenberg RL, Hogue CJR.

Ann Epidemiol. 2017 Aug;27(8):466-471.e2. doi: 10.1016/j.annepidem.2017.07.001. Epub 2017 Jul 20.


Living in Peace: Host-Microbiota Mutualism in the Skin.

Campbell DJ, Koch MA.

Cell Host Microbe. 2017 Apr 12;21(4):419-420. doi: 10.1016/j.chom.2017.03.012.


Eutrema salsugineum (Cruciferae) new to Mexico: a surprising generic record for the flora of Middle America.

German DA, Koch MA.

PhytoKeys. 2017 Jan 5;(76):13-21. doi: 10.3897/phytokeys.76.9731. eCollection 2017.


Plastome phylogeny and early diversification of Brassicaceae.

Guo X, Liu J, Hao G, Zhang L, Mao K, Wang X, Zhang D, Ma T, Hu Q, Al-Shehbaz IA, Koch MA.

BMC Genomics. 2017 Feb 16;18(1):176. doi: 10.1186/s12864-017-3555-3.


Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data.

Jiao WB, Accinelli GG, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoel M, Woetzel S, Madrid-Herrero E, Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, Clavijo B, Coupland G, Schneeberger K.

Genome Res. 2017 May;27(5):778-786. doi: 10.1101/gr.213652.116. Epub 2017 Feb 3.


Underexplored biodiversity of Eastern Mediterranean biota: systematics and evolutionary history of the genus Aubrieta (Brassicaceae).

Koch MA, Karl R, German DA.

Ann Bot. 2017 Jan;119(1):39-57. doi: 10.1093/aob/mcw204. Epub 2016 Dec 10.


Association Between Sleep-Disordered Breathing and Hypertensive Disorders of Pregnancy and Gestational Diabetes Mellitus.

Facco FL, Parker CB, Reddy UM, Silver RM, Koch MA, Louis JM, Basner RC, Chung JH, Nhan-Chang CL, Pien GW, Redline S, Grobman WA, Wing DA, Simhan HN, Haas DM, Mercer BM, Parry S, Mobley D, Hunter S, Saade GR, Schubert FP, Zee PC.

Obstet Gynecol. 2017 Jan;129(1):31-41. doi: 10.1097/AOG.0000000000001805.


Mutated olfactomedin 1 in the interphotoreceptor matrix of the mouse retina causes functional deficits and vulnerability to light damage.

Koch MA, Rosenhammer B, Paper W, Volz C, Braunger BM, Hausberger J, Jägle H, Tamm ER.

Histochem Cell Biol. 2017 Apr;147(4):453-469. doi: 10.1007/s00418-016-1510-z. Epub 2016 Oct 27.


Glucosinolate diversity within a phylogenetic framework of the tribe Cardamineae (Brassicaceae) unraveled with HPLC-MS/MS and NMR-based analytical distinction of 70 desulfoglucosinolates.

Olsen CE, Huang XC, Hansen CIC, Cipollini D, Ørgaard M, Matthes A, Geu-Flores F, Koch MA, Agerbirk N.

Phytochemistry. 2016 Dec;132:33-56. doi: 10.1016/j.phytochem.2016.09.013. Epub 2016 Oct 13.


Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.

Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, Sese J, Shimizu KK, Weigel D, Krämer U, Koch MA, Nordborg M.

Nat Genet. 2016 Sep;48(9):1077-82. doi: 10.1038/ng.3617. Epub 2016 Jul 18.


Diversity hotspots of the laurel forest on Tenerife, Canary Islands: a phylogeographic study of Laurus and Ixanthus.

Betzin A, Thiv M, Koch MA.

Ann Bot. 2016 Sep;118(3):495-510. doi: 10.1093/aob/mcw124. Epub 2016 Jul 6.


Stillbirth, hypertensive disorders of pregnancy, and placental pathology.

Gibbins KJ, Silver RM, Pinar H, Reddy UM, Parker CB, Thorsten V, Willinger M, Dudley DJ, Bukowski R, Saade GR, Koch MA, Conway D, Hogue CJ, Stoll BJ, Goldenberg RL.

Placenta. 2016 Jul;43:61-8. doi: 10.1016/j.placenta.2016.04.020. Epub 2016 May 7.


Maternal IgG and IgA Antibodies Dampen Mucosal T Helper Cell Responses in Early Life.

Koch MA, Reiner GL, Lugo KA, Kreuk LS, Stanbery AG, Ansaldo E, Seher TD, Ludington WB, Barton GM.

Cell. 2016 May 5;165(4):827-41. doi: 10.1016/j.cell.2016.04.055.


Incongruent range dynamics between co-occurring Asian temperate tree species facilitated by life history traits.

Zhao YP, Yan XL, Muir G, Dai QY, Koch MA, Fu CX.

Ecol Evol. 2016 Mar 6;6(8):2346-58. doi: 10.1002/ece3.2014. eCollection 2016 Apr.


Ultrasound Measurement of the Fetal Adrenal Gland as a Predictor of Spontaneous Preterm Birth.

Hoffman MK, Turan OM, Parker CB, Wapner RJ, Wing DA, Haas DM, Esplin MS, Parry S, Grobman WA, Simhan HN, Myers S, Holder TE Jr, Rumney P, Litton CG, Silver RM, Elovitz MA, Peaceman AM, Emery S, Mercer BM, Koch MA, Saade GR; Nulliparous Pregnancy Outcomes Study: Monitoring Mothers-to-Be (nuMoM2b) Network.

Obstet Gynecol. 2016 Apr;127(4):726-34. doi: 10.1097/AOG.0000000000001342.


Turnip Time Travels: Age Estimates in Brassicaceae.

Franzke A, Koch MA, Mummenhoff K.

Trends Plant Sci. 2016 Jul;21(7):554-561. doi: 10.1016/j.tplants.2016.01.024. Epub 2016 Feb 23. Review.


Pregnancy as a Window to Future Cardiovascular Health: Design and Implementation of the nuMoM2b Heart Health Study.

Haas DM, Ehrenthal DB, Koch MA, Catov JM, Barnes SE, Facco F, Parker CB, Mercer BM, Bairey-Merz CN, Silver RM, Wapner RJ, Simhan HN, Hoffman MK, Grobman WA, Greenland P, Wing DA, Saade GR, Parry S, Zee PC, Reddy UM, Pemberton VL, Burwen DR; National Heart, Lung, and Blood Institute nuMoM2b Heart Health Study Network.

Am J Epidemiol. 2016 Mar 15;183(6):519-30. doi: 10.1093/aje/kwv309. Epub 2016 Jan 28.


In Vivo Analysis of Disease-Associated Point Mutations Unveils Profound Differences in mRNA Splicing of Peripherin-2 in Rod and Cone Photoreceptors.

Becirovic E, Böhm S, Nguyen ON, Riedmayr LM, Koch MA, Schulze E, Kohl S, Borsch O, Santos-Ferreira T, Ader M, Michalakis S, Biel M.

PLoS Genet. 2016 Jan 21;12(1):e1005811. doi: 10.1371/journal.pgen.1005811. eCollection 2016 Jan.


Pharmaceutical Market Access: current state of affairs and key challenges - results of the Market Access Launch Excellence Inventory (MALEI).

Koch MA.

J Mark Access Health Policy. 2015 Dec 21;3(1):29679. doi: 10.3402/jmahp.v3.29679. eCollection 2015.


Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution.

Huang CH, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan DY, Zhong Y, Ma H.

Mol Biol Evol. 2016 Feb;33(2):394-412. doi: 10.1093/molbev/msv226. Epub 2015 Oct 29.


Mining microsatellite markers from public expressed sequence tags databases for the study of threatened plants.

Lopez L, Barreiro R, Fischer M, Koch MA.

BMC Genomics. 2015 Oct 13;16:781. doi: 10.1186/s12864-015-2031-1.


Conventions and nomenclature for double diffusion encoding NMR and MRI.

Shemesh N, Jespersen SN, Alexander DC, Cohen Y, Drobnjak I, Dyrby TB, Finsterbusch J, Koch MA, Kuder T, Laun F, Lawrenz M, Lundell H, Mitra PP, Nilsson M, Özarslan E, Topgaard D, Westin CF.

Magn Reson Med. 2016 Jan;75(1):82-7. doi: 10.1002/mrm.25901. Epub 2015 Sep 29. Review.


A Time-Calibrated Road Map of Brassicaceae Species Radiation and Evolutionary History.

Hohmann N, Wolf EM, Lysak MA, Koch MA.

Plant Cell. 2015 Oct;27(10):2770-84. doi: 10.1105/tpc.15.00482. Epub 2015 Sep 26.


A new chromosome was born: comparative chromosome painting in Boechera.

Koch MA.

Trends Plant Sci. 2015 Sep;20(9):533-5. doi: 10.1016/j.tplants.2015.07.001. Epub 2015 Jul 27.


Biogeography of Mediterranean Hotspot Biodiversity: Re-Evaluating the 'Tertiary Relict' Hypothesis of Macaronesian Laurel Forests.

Kondraskov P, Schütz N, Schüßler C, de Sequeira MM, Guerra AS, Caujapé-Castells J, Jaén-Molina R, Marrero-Rodríguez Á, Koch MA, Linder P, Kovar-Eder J, Thiv M.

PLoS One. 2015 Jul 14;10(7):e0132091. doi: 10.1371/journal.pone.0132091. eCollection 2015.


Exogenous selection rather than cytonuclear incompatibilities shapes asymmetrical fitness of reciprocal Arabidopsis hybrids.

Muir G, Ruiz-Duarte P, Hohmann N, Mable BK, Novikova P, Schmickl R, Guggisberg A, Koch MA.

Ecol Evol. 2015 Apr;5(8):1734-45. doi: 10.1002/ece3.1474. Epub 2015 Mar 25.

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