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Items: 21

1.

Microbial Taxon-Specific Isotope Incorporation with DNA Quantitative Stable Isotope Probing.

Finley BK, Hayer M, Mau RL, Purcell AM, Koch BJ, van Gestel NC, Schwartz E, Hungate BA.

Methods Mol Biol. 2019;2046:137-149. doi: 10.1007/978-1-4939-9721-3_11.

PMID:
31407302
2.

Evolutionary history constrains microbial traits across environmental variation.

Morrissey EM, Mau RL, Hayer M, Liu XA, Schwartz E, Dijkstra P, Koch BJ, Allen K, Blazewicz SJ, Hofmockel K, Pett-Ridge J, Hungate BA.

Nat Ecol Evol. 2019 Jul;3(7):1064-1069. doi: 10.1038/s41559-019-0918-y. Epub 2019 Jun 17.

PMID:
31209289
3.

Predictive genomic traits for bacterial growth in culture versus actual growth in soil.

Li J, Mau RL, Dijkstra P, Koch BJ, Schwartz E, Liu XA, Morrissey EM, Blazewicz SJ, Pett-Ridge J, Stone BW, Hayer M, Hungate BA.

ISME J. 2019 Sep;13(9):2162-2172. doi: 10.1038/s41396-019-0422-z. Epub 2019 May 3.

PMID:
31053828
4.

Quantitative stable isotope probing with H218O reveals that most bacterial taxa in soil synthesize new ribosomal RNA.

Papp K, Mau RL, Hayer M, Koch BJ, Hungate BA, Schwartz E.

ISME J. 2018 Dec;12(12):3043-3045. doi: 10.1038/s41396-018-0233-7. Epub 2018 Jul 24.

5.

Taxonomic patterns in the nitrogen assimilation of soil prokaryotes.

Morrissey EM, Mau RL, Schwartz E, Koch BJ, Hayer M, Hungate BA.

Environ Microbiol. 2018 Mar;20(3):1112-1119. doi: 10.1111/1462-2920.14051. Epub 2018 Mar 14.

PMID:
29411496
6.

The maternal-zygotic transition and zygotic activation of the Mnemiopsis leidyi genome occurs within the first three cleavage cycles.

Davidson PL, Koch BJ, Schnitzler CE, Henry JQ, Martindale MQ, Baxevanis AD, Browne WE.

Mol Reprod Dev. 2017 Nov;84(11):1218-1229. doi: 10.1002/mrd.22926. Epub 2017 Nov 10.

7.

Colonizing opportunistic pathogens (COPs): The beasts in all of us.

Price LB, Hungate BA, Koch BJ, Davis GS, Liu CM.

PLoS Pathog. 2017 Aug 10;13(8):e1006369. doi: 10.1371/journal.ppat.1006369. eCollection 2017 Aug. Review. No abstract available.

8.

Bacterial carbon use plasticity, phylogenetic diversity and the priming of soil organic matter.

Morrissey EM, Mau RL, Schwartz E, McHugh TA, Dijkstra P, Koch BJ, Marks JC, Hungate BA.

ISME J. 2017 Aug;11(8):1890-1899. doi: 10.1038/ismej.2017.43. Epub 2017 Apr 7.

9.

A global database of nitrogen and phosphorus excretion rates of aquatic animals.

Vanni MJ, McIntyre PB, Allen D, Arnott DL, Benstead JP, Berg DJ, Brabrand Å, Brosse S, Bukaveckas PA, Caliman A, Capps KA, Carneiro LS, Chadwick NE, Christian AD, Clarke A, Conroy JD, Cross WF, Culver DA, Dalton CM, Devine JA, Domine LM, Evans-White MA, Faafeng BA, Flecker AS, Gido KB, Godinot C, Guariento RD, Haertel-Borer S, Hall RO, Henry R, Herwig BR, Hicks BJ, Higgins KA, Hood JM, Hopton ME, Ikeda T, James WF, Jansen HM, Johnson CR, Koch BJ, Lamberti GA, Lessard-Pilon S, Maerz JC, Mather ME, McManamay RA, Milanovich JR, Morgan DKJ, Moslemi JM, Naddafi R, Nilssen JP, Pagano M, Pilati A, Post DM, Roopin M, Rugenski AT, Schaus MH, Shostell J, Small GE, Solomon CT, Sterrett SC, Strand Ø, Tarvainen M, Taylor JM, Torres-Gerald LE, Turner CB, Urabe J, Uye SI, Ventelä AM, Villeger S, Whiles MR, Wilhelm FM, Wilson HF, Xenopoulos MA, Zimmer KD.

Ecology. 2017 May;98(5):1475. doi: 10.1002/ecy.1792. Epub 2017 Apr 18.

10.

pH, Lactate, and Hypoxia: Reciprocity in Regulating High-Affinity Monocarboxylate Transporter Expression in Glioblastoma.

Caruso JP, Koch BJ, Benson PD, Varughese E, Monterey MD, Lee AE, Dave AM, Kiousis S, Sloan AE, Mathupala SP.

Neoplasia. 2017 Feb;19(2):121-134. doi: 10.1016/j.neo.2016.12.011. Epub 2017 Jan 13.

11.

Identification of growing bacteria during litter decomposition in freshwater through H218O quantitative stable isotope probing.

Hayer M, Schwartz E, Marks JC, Koch BJ, Morrissey EM, Schuettenberg AA, Hungate BA.

Environ Microbiol Rep. 2016 Dec;8(6):975-982. doi: 10.1111/1758-2229.12475. Epub 2016 Oct 13.

PMID:
27657357
12.

Stable isotope probing with 18O-water to investigate microbial growth and death in environmental samples.

Schwartz E, Hayer M, Hungate BA, Koch BJ, McHugh TA, Mercurio W, Morrissey EM, Soldanova K.

Curr Opin Biotechnol. 2016 Oct;41:14-18. doi: 10.1016/j.copbio.2016.03.003. Epub 2016 Mar 29. Review.

PMID:
27035052
13.

Phylogenetic organization of bacterial activity.

Morrissey EM, Mau RL, Schwartz E, Caporaso JG, Dijkstra P, van Gestel N, Koch BJ, Liu CM, Hayer M, McHugh TA, Marks JC, Price LB, Hungate BA.

ISME J. 2016 Sep;10(9):2336-40. doi: 10.1038/ismej.2016.28. Epub 2016 Mar 4.

14.

Quantitative microbial ecology through stable isotope probing.

Hungate BA, Mau RL, Schwartz E, Caporaso JG, Dijkstra P, van Gestel N, Koch BJ, Liu CM, McHugh TA, Marks JC, Morrissey EM, Price LB.

Appl Environ Microbiol. 2015 Nov;81(21):7570-81. doi: 10.1128/AEM.02280-15. Epub 2015 Aug 21.

15.

Ominous projections for global antibiotic use in food-animal production.

Price LB, Koch BJ, Hungate BA.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):5554-5. doi: 10.1073/pnas.1505312112. Epub 2015 Apr 28. No abstract available.

16.

A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi.

Moreland RT, Nguyen AD, Ryan JF, Schnitzler CE, Koch BJ, Siewert K, Wolfsberg TG, Baxevanis AD.

BMC Genomics. 2014 Apr 28;15:316. doi: 10.1186/1471-2164-15-316.

17.

The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution.

Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, Koch BJ, Francis WR, Havlak P; NISC Comparative Sequencing Program, Smith SA, Putnam NH, Haddock SH, Dunn CW, Wolfsberg TG, Mullikin JC, Martindale MQ, Baxevanis AD.

Science. 2013 Dec 13;342(6164):1242592. doi: 10.1126/science.1242592.

18.

The diversification of the LIM superclass at the base of the metazoa increased subcellular complexity and promoted multicellular specialization.

Koch BJ, Ryan JF, Baxevanis AD.

PLoS One. 2012;7(3):e33261. doi: 10.1371/journal.pone.0033261. Epub 2012 Mar 15.

19.

Metabolic targeting of lactate efflux by malignant glioma inhibits invasiveness and induces necrosis: an in vivo study.

Colen CB, Shen Y, Ghoddoussi F, Yu P, Francis TB, Koch BJ, Monterey MD, Galloway MP, Sloan AE, Mathupala SP.

Neoplasia. 2011 Jul;13(7):620-32.

20.

Protein farnesylation-dependent Raf/extracellular signal-related kinase signaling links to cytoskeletal remodeling to facilitate glucose-induced insulin secretion in pancreatic beta-cells.

Kowluru A, Veluthakal R, Rhodes CJ, Kamath V, Syed I, Koch BJ.

Diabetes. 2010 Apr;59(4):967-77. doi: 10.2337/db09-1334. Epub 2010 Jan 13.

21.

Universal coupling between metal-clad waveguides and optical ring resonators.

White IM, Suter JD, Oveys H, Fan X, Smith TL, Zhang J, Koch BJ, Haase MA.

Opt Express. 2007 Jan 22;15(2):646-51.

PMID:
19532287

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