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Items: 20

1.

Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing.

Ávila Robledillo L, Koblížková A, Novák P, Böttinger K, Vrbová I, Neumann P, Schubert I, Macas J.

Sci Rep. 2018 Apr 11;8(1):5838. doi: 10.1038/s41598-018-24196-3.

2.

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.

Novák P, Ávila Robledillo L, Koblížková A, Vrbová I, Neumann P, Macas J.

Nucleic Acids Res. 2017 Jul 7;45(12):e111. doi: 10.1093/nar/gkx257.

3.

Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris).

Kowar T, Zakrzewski F, Macas J, Kobližková A, Viehoever P, Weisshaar B, Schmidt T.

BMC Plant Biol. 2016 May 26;16(1):120. doi: 10.1186/s12870-016-0805-5.

4.

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

Macas J, Novák P, Pellicer J, Čížková J, Koblížková A, Neumann P, Fuková I, Doležel J, Kelly LJ, Leitch IJ.

PLoS One. 2015 Nov 25;10(11):e0143424. doi: 10.1371/journal.pone.0143424. eCollection 2015.

5.

Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species.

Neumann P, Pavlíková Z, Koblížková A, Fuková I, Jedličková V, Novák P, Macas J.

Mol Biol Evol. 2015 Jul;32(7):1862-79. doi: 10.1093/molbev/msv070. Epub 2015 Mar 13.

6.

Genome-wide analysis of repeat diversity across the family Musaceae.

Novák P, Hřibová E, Neumann P, Koblížková A, Doležel J, Macas J.

PLoS One. 2014 Jun 16;9(6):e98918. doi: 10.1371/journal.pone.0098918. eCollection 2014.

7.

Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres.

Zhang H, Koblížková A, Wang K, Gong Z, Oliveira L, Torres GA, Wu Y, Zhang W, Novák P, Buell CR, Macas J, Jiang J.

Plant Cell. 2014 Apr;26(4):1436-1447. Epub 2014 Apr 11.

8.

Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

Gong Z, Wu Y, Koblízková A, Torres GA, Wang K, Iovene M, Neumann P, Zhang W, Novák P, Buell CR, Macas J, Jiang J.

Plant Cell. 2012 Sep;24(9):3559-74. doi: 10.1105/tpc.112.100511. Epub 2012 Sep 11.

9.

Stretching the rules: monocentric chromosomes with multiple centromere domains.

Neumann P, Navrátilová A, Schroeder-Reiter E, Koblížková A, Steinbauerová V, Chocholová E, Novák P, Wanner G, Macas J.

PLoS Genet. 2012;8(6):e1002777. doi: 10.1371/journal.pgen.1002777. Epub 2012 Jun 21.

10.

Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia.

Macas J, Kejnovský E, Neumann P, Novák P, Koblížková A, Vyskot B.

PLoS One. 2011;6(11):e27335. doi: 10.1371/journal.pone.0027335. Epub 2011 Nov 9. Erratum in: PLoS One. 2011;6(12). doi: 10.1371/annotation/4ccaacb2-92d7-445a-87da-313cedf18feb.

11.

Plant centromeric retrotransposons: a structural and cytogenetic perspective.

Neumann P, Navrátilová A, Koblížková A, Kejnovský E, Hřibová E, Hobza R, Widmer A, Doležel J, Macas J.

Mob DNA. 2011 Mar 3;2(1):4. doi: 10.1186/1759-8753-2-4.

12.

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.

Ambrozová K, Mandáková T, Bures P, Neumann P, Leitch IJ, Koblízková A, Macas J, Lysak MA.

Ann Bot. 2011 Feb;107(2):255-68. doi: 10.1093/aob/mcq235. Epub 2010 Dec 14.

13.

Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats.

Macas J, Koblízková A, Navrátilová A, Neumann P.

Gene. 2009 Dec 15;448(2):198-206. doi: 10.1016/j.gene.2009.06.014. Epub 2009 Jun 27.

PMID:
19563868
14.

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.

Cermak T, Kubat Z, Hobza R, Koblizkova A, Widmer A, Macas J, Vyskot B, Kejnovsky E.

Chromosome Res. 2008;16(7):961-76. doi: 10.1007/s10577-008-1254-2. Epub 2008 Oct 15.

PMID:
18853265
15.

Survey of extrachromosomal circular DNA derived from plant satellite repeats.

Navrátilová A, Koblízková A, Macas J.

BMC Plant Biol. 2008 Aug 22;8:90. doi: 10.1186/1471-2229-8-90.

16.

Sequence homogenization and chromosomal localization of VicTR-B satellites differ between closely related Vicia species.

Macas J, Navrátilová A, Koblízková A.

Chromosoma. 2006 Dec;115(6):437-47. Epub 2006 Jun 20.

PMID:
16788823
17.

Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement.

Neumann P, Koblízková A, Navrátilová A, Macas J.

Genetics. 2006 Jun;173(2):1047-56. Epub 2006 Apr 3.

18.
19.

PIGY, a new plant envelope-class LTR retrotransposon.

Neumann P, Pozárková D, Koblízková A, Macas J.

Mol Genet Genomics. 2005 Mar;273(1):43-53. Epub 2005 Jan 25.

PMID:
15668770
20.

Subtraction with 3' modified oligonucleotides eliminates amplification artifacts in DNA libraries enriched for microsatellites.

Koblízková A, Dolezel J, Macas J.

Biotechniques. 1998 Jul;25(1):32-4, 36, 38. No abstract available.

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