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Items: 38

1.

DNA Replication: From Radioisotopes to Click Chemistry.

Ligasová A, Koberna K.

Molecules. 2018 Nov 17;23(11). pii: E3007. doi: 10.3390/molecules23113007. Review.

2.
3.

Looking for ugly ducklings: The role of the stability of BrdU-antibody complex and the improved method of the detection of DNA replication.

Ligasová A, Konečný P, Frydrych I, Koberna K.

PLoS One. 2017 Mar 30;12(3):e0174893. doi: 10.1371/journal.pone.0174893. eCollection 2017.

4.

Dr Jekyll and Mr Hyde: a strange case of 5-ethynyl-2'-deoxyuridine and 5-ethynyl-2'-deoxycytidine.

Ligasová A, Liboska R, Friedecký D, Mičová K, Adam T, Oždian T, Rosenberg I, Koberna K.

Open Biol. 2016 Jan;6(1):150172. doi: 10.1098/rsob.150172.

5.

Tracking Mitochondrial DNA In Situ.

Ligasová A, Koberna K.

Methods Mol Biol. 2016;1351:81-92. doi: 10.1007/978-1-4939-3040-1_7.

PMID:
26530676
6.

The Fingerprint of Anti-Bromodeoxyuridine Antibodies and Its Use for the Assessment of Their Affinity to 5-Bromo-2'-Deoxyuridine in Cellular DNA under Various Conditions.

Ligasová A, Liboska R, Rosenberg I, Koberna K.

PLoS One. 2015 Jul 10;10(7):e0132393. doi: 10.1371/journal.pone.0132393. eCollection 2015.

7.

A fatal combination: a thymidylate synthase inhibitor with DNA damaging activity.

Ligasová A, Strunin D, Friedecký D, Adam T, Koberna K.

PLoS One. 2015 Feb 11;10(2):e0117459. doi: 10.1371/journal.pone.0117459. eCollection 2015.

8.

Tracking DNA and RNA sequences at high resolution.

Cmarko D, Ligasová A, Koberna K.

Methods Mol Biol. 2014;1117:343-66. doi: 10.1007/978-1-62703-776-1_16.

PMID:
24357371
9.

A New Method of the Visualization of the Double-Stranded Mitochondrial and Nuclear DNA.

Ligasová A, Strunin D, Koberna K.

PLoS One. 2013 Jun 18;8(6):e66864. doi: 10.1371/journal.pone.0066864. Print 2013.

10.

Atomic scissors: a new method of tracking the 5-bromo-2'-deoxyuridine-labeled DNA in situ.

Ligasová A, Strunin D, Liboska R, Rosenberg I, Koberna K.

PLoS One. 2012;7(12):e52584. doi: 10.1371/journal.pone.0052584. Epub 2012 Dec 26.

11.

Most anti-BrdU antibodies react with 2'-deoxy-5-ethynyluridine -- the method for the effective suppression of this cross-reactivity.

Liboska R, Ligasová A, Strunin D, Rosenberg I, Koberna K.

PLoS One. 2012;7(12):e51679. doi: 10.1371/journal.pone.0051679. Epub 2012 Dec 18.

12.

Secretory glands in cercaria of the neuropathogenic schistosome Trichobilharzia regenti - ultrastructural characterization, 3-D modelling, volume and pH estimations.

Ligasová A, Bulantová J, Sebesta O, Kašný M, Koberna K, Mikeš L.

Parasit Vectors. 2011 Aug 19;4:162. doi: 10.1186/1756-3305-4-162.

13.

In situ reverse transcription: the magic of strength and anonymity.

Ligasová A, Koberna K.

Nucleic Acids Res. 2010 Sep;38(16):e167. doi: 10.1093/nar/gkq619. Epub 2010 Jul 13.

14.

Organization of human replicon: singles or zipping couples?

Ligasová A, Raska I, Koberna K.

J Struct Biol. 2009 Mar;165(3):204-13. doi: 10.1016/j.jsb.2008.11.004. Epub 2008 Dec 3.

15.

Pontin is localized in nucleolar fibrillar centers.

Cvacková Z, Albring KF, Koberna K, Ligasová A, Huber O, Raska I, Stanek D.

Chromosoma. 2008 Oct;117(5):487-97. doi: 10.1007/s00412-008-0170-8. Epub 2008 Jun 12.

16.

Positioning of NORs and NOR-bearing chromosomes in relation to nucleoli.

Kalmárová M, Smirnov E, Masata M, Koberna K, Ligasová A, Popov A, Raska I.

J Struct Biol. 2007 Oct;160(1):49-56. Epub 2007 Jul 12.

17.
18.

NORs and their transcription competence during the cell cycle.

Smirnov E, Kalmárová M, Koberna K, Zemanová Z, Malínský J, Masata M, Cvacková Z, Michalová K, Raska I.

Folia Biol (Praha). 2006;52(3):59-70.

19.

Potential roles for ubiquitin and the proteasome during ribosome biogenesis.

Stavreva DA, Kawasaki M, Dundr M, Koberna K, Müller WG, Tsujimura-Takahashi T, Komatsu W, Hayano T, Isobe T, Raska I, Misteli T, Takahashi N, McNally JG.

Mol Cell Biol. 2006 Jul;26(13):5131-45. Erratum in: Mol Cell Biol. 2006 Aug;26(16):6308.

20.

Replication-coupled modulation of early replicating chromatin domains detected by anti-actin antibody.

Fidlerová H, Masata M, Malínský J, Fialová M, Cvacková Z, Louzecká A, Koberna K, Berezney R, Raska I.

J Cell Biochem. 2005 Apr 1;94(5):899-916.

PMID:
15714458
21.

The chromatin remodeling complex NoRC controls replication timing of rRNA genes.

Li J, Santoro R, Koberna K, Grummt I.

EMBO J. 2005 Jan 12;24(1):120-7. Epub 2004 Dec 2.

22.

Spatio-temporal dynamics at rDNA foci: global switching between DNA replication and transcription.

Pliss A, Koberna K, Vecerová J, Malínský J, Masata M, Fialová M, Raska I, Berezney R.

J Cell Biochem. 2005 Feb 15;94(3):554-65.

PMID:
15543556
23.

Electron microscopy of DNA replication in 3-D: evidence for similar-sized replication foci throughout S-phase.

Koberna K, Ligasová A, Malínský J, Pliss A, Siegel AJ, Cvacková Z, Fidlerová H, Masata M, Fialová M, Raska I, Berezney R.

J Cell Biochem. 2005 Jan 1;94(1):126-38.

PMID:
15523671
24.

The nucleolus and transcription of ribosomal genes.

Raska I, Koberna K, Malínský J, Fidlerová H, Masata M.

Biol Cell. 2004 Oct;96(8):579-94. Review.

PMID:
15519693
25.

Formation of nuclear splicing factor compartments is independent of lamins A/C.

Vecerová J, Koberna K, Malínsky J, Soutoglou E, Sullivan T, Stewart CL, Raska I, Misteli T.

Mol Biol Cell. 2004 Nov;15(11):4904-10. Epub 2004 Sep 8.

26.

Searching for active ribosomal genes in situ: light microscopy in light of the electron beam.

Malínský J, Koberna K, Bednár J, Stulík J, Raska I.

J Struct Biol. 2002 Oct-Dec;140(1-3):227-31.

PMID:
12490170
27.

Ribosomal genes in focus: new transcripts label the dense fibrillar components and form clusters indicative of "Christmas trees" in situ.

Koberna K, Malínský J, Pliss A, Masata M, Vecerova J, Fialová M, Bednár J, Raska I.

J Cell Biol. 2002 May 27;157(5):743-8. Epub 2002 May 28. Erratum in: J Cell Biol 2002 Jul 22;158(2):369.

28.

An ATP-dependent step is required for the translocation of microinjected precursor mRNA into nuclear speckles.

Kopský V, Vecerová J, Melcák I, Pliss A, Stulík J, Koberna K, Tomásková L, Raska I.

Folia Biol (Praha). 2002;48(2):69-72.

PMID:
12002677
29.

Non-isotopic mapping of ribosomal RNA synthesis and processing in the nucleolus.

Stanek D, Koberna K, Pliss A, Malínský J, Masata M, Vecerová J, Risueño MC, Raska I.

Chromosoma. 2001 Dec;110(7):460-70. Epub 2001 Nov 9.

PMID:
11862453
30.

The supply of exogenous deoxyribonucleotides accelerates the speed of the replication fork in early S-phase.

Malínsky J, Koberna K, Stanĕk D, Masata M, Votruba I, Raska I.

J Cell Sci. 2001 Feb;114(Pt 4):747-50.

31.

In situ fluorescence visualization of bromouridine incorporated into newly transcribed nucleolar RNA.

Koberna K, Stanĕk D, Malínský J, Ctrnáctá V, Cermanová S, Novotná J, Kopský V, Raska I.

Acta Histochem. 2000 Feb;102(1):15-20.

PMID:
10726161
32.

Nuclear pre-mRNA compartmentalization: trafficking of released transcripts to splicing factor reservoirs.

Melcák I, Cermanová S, Jirsová K, Koberna K, Malínský J, Raska I.

Mol Biol Cell. 2000 Feb;11(2):497-510.

33.

Nuclear organization studied with the help of a hypotonic shift: its use permits hydrophilic molecules to enter into living cells.

Koberna K, Stanek D, Malínský J, Eltsov M, Pliss A, Ctrnáctá V, Cermanová S, Raska I.

Chromosoma. 1999 Sep;108(5):325-35.

PMID:
10525969
34.

Non-isotopic detection of nucleolar transcription in pre-implantation mouse embryos.

Koberna K, Landa V, Kanka J, Pliss A, Eltsov M, Stanĕk D, Raska I.

Reprod Nutr Dev. 1998 Jan-Feb;38(1):117-26.

PMID:
9606754
35.

The RNA 3' cleavage factors CstF 64 kDa and CPSF 100 kDa are concentrated in nuclear domains closely associated with coiled bodies and newly synthesized RNA.

Schul W, Groenhout B, Koberna K, Takagaki Y, Jenny A, Manders EM, Raska I, van Driel R, de Jong L.

EMBO J. 1996 Jun 3;15(11):2883-92.

36.

Does the synthesis of ribosomal RNA take place within nucleolar fibrillar centers or dense fibrillar components? A critical appraisal.

Raska I, Dundr M, Koberna K, Melcák I, Risueño MC, Török I.

J Struct Biol. 1995 Jan-Feb;114(1):1-22.

PMID:
7772414
37.
38.

Ultrastructural immunolocalization of cyclin/PCNA in synchronized 3T3 cells.

Raska I, Koberna K, Jarník M, Petrasovicová V, Bednár J, Raska K Jr, Bravo R.

Exp Cell Res. 1989 Sep;184(1):81-9.

PMID:
2571512

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