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Items: 1 to 50 of 78

1.

Six weeks of strength endurance training decreases circulating senescence-prone T-lymphocytes in cytomegalovirus seropositive but not seronegative older women.

Cao Dinh H, Bautmans I, Beyer I, Onyema OO, Liberman K, De Dobbeleer L, Renmans W, Vander Meeren S, Jochmans K, Delaere A, Knoop V, Njemini R.

Immun Ageing. 2019 Jul 25;16:17. doi: 10.1186/s12979-019-0157-8. eCollection 2019.

2.

The operationalization of fatigue in frailty scales: a systematic review.

Knoop V, Costenoble A, Vella Azzopardi R, Vermeiren S, Debain A, Jansen B, Scafoglieri A, Bautmans I; Gerontopole Brussels Study group.

Ageing Res Rev. 2019 Aug;53:100911. doi: 10.1016/j.arr.2019.100911. Epub 2019 May 25. Review.

PMID:
31136819
3.

Plant-type pentatricopeptide repeat proteins with a DYW domain drive C-to-U RNA editing in Escherichia coli.

Oldenkott B, Yang Y, Lesch E, Knoop V, Schallenberg-Rüdinger M.

Commun Biol. 2019 Mar 1;2:85. doi: 10.1038/s42003-019-0328-3. eCollection 2019.

4.
5.

Strength endurance training but not intensive strength training reduces senescence-prone T-cells in peripheral blood in community-dwelling elderly women.

Cao Dinh H, Njemini R, Onyema OO, Beyer I, Liberman K, De Dobbeleer L, Renmans W, Vander Meeren S, Jochmans K, Delaere A, Knoop V, Bautmans I.

J Gerontol A Biol Sci Med Sci. 2018 Oct 4. doi: 10.1093/gerona/gly229. [Epub ahead of print]

PMID:
30285092
6.

Evaluation of appendicular lean mass using bio impedance in persons aged 80+: A new equation based on the BUTTERFLY-study.

Vermeiren S, Beckwée D, Vella-Azzopardi R, Beyer I, Knoop V, Jansen B, Delaere A, Antoine A, Bautmans I, Scafoglieri A; Gerontopole Brussels Study group.

Clin Nutr. 2019 Aug;38(4):1756-1764. doi: 10.1016/j.clnu.2018.07.029. Epub 2018 Aug 2.

PMID:
30119982
7.

Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0.

Lenz H, Hein A, Knoop V.

BMC Bioinformatics. 2018 Jul 3;19(1):255. doi: 10.1186/s12859-018-2244-9.

9.

A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens.

Schallenberg-Rüdinger M, Oldenkott B, Hiss M, Trinh PL, Knoop V, Rensing SA.

Plant Cell Physiol. 2017 Mar 1;58(3):496-507. doi: 10.1093/pcp/pcw229.

PMID:
28394399
11.

Monilophyte mitochondrial rps1 genes carry a unique group II intron that likely originated from an ancient paralog in rpl2.

Knie N, Grewe F, Knoop V.

RNA. 2016 Sep;22(9):1338-48. doi: 10.1261/rna.056572.116. Epub 2016 Jun 28.

13.

Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution.

Guo W, Grewe F, Fan W, Young GJ, Knoop V, Palmer JD, Mower JP.

Mol Biol Evol. 2016 Jun;33(6):1448-60. doi: 10.1093/molbev/msw024. Epub 2016 Feb 1.

PMID:
26831941
14.
15.

The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling.

Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, Landweber LF, Maric C, Miller D, Noegel AA, Peace R, Pierron G, Sasaki T, Schallenberg-Rüdinger M, Schleicher M, Singh R, Spaller T, Storey KB, Suzuki T, Tomlinson C, Tyson JJ, Warren WC, Werner ER, Werner-Felmayer G, Wilson RK, Winckler T, Gott JM, Glöckner G, Marwan W.

Genome Biol Evol. 2015 Nov 27;8(1):109-25. doi: 10.1093/gbe/evv237.

16.

Horsetails are the sister group to all other monilophytes and Marattiales are sister to leptosporangiate ferns.

Knie N, Fischer S, Grewe F, Polsakiewicz M, Knoop V.

Mol Phylogenet Evol. 2015 Sep;90:140-9. doi: 10.1016/j.ympev.2015.05.008. Epub 2015 May 18.

PMID:
25999055
17.

Horizontal gene transfer of chlamydial-like tRNA genes into early vascular plant mitochondria.

Knie N, Polsakiewicz M, Knoop V.

Mol Biol Evol. 2015 Mar;32(3):629-34. doi: 10.1093/molbev/msu324. Epub 2014 Nov 20.

PMID:
25415968
18.

Chloroplast RNA editing going extreme: more than 3400 events of C-to-U editing in the chloroplast transcriptome of the lycophyte Selaginella uncinata.

Oldenkott B, Yamaguchi K, Tsuji-Tsukinoki S, Knie N, Knoop V.

RNA. 2014 Oct;20(10):1499-506. doi: 10.1261/rna.045575.114. Epub 2014 Aug 20.

19.

A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype.

Schallenberg-Rüdinger M, Kindgren P, Zehrmann A, Small I, Knoop V.

Plant J. 2013 Nov;76(3):420-32. doi: 10.1111/tpj.12304. Epub 2013 Sep 10.

20.

A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes.

Schallenberg-Rüdinger M, Lenz H, Polsakiewicz M, Gott JM, Knoop V.

RNA Biol. 2013;10(9):1549-56. doi: 10.4161/rna.25755. Epub 2013 Jul 16.

21.

Membrane protein interactions between different Arabidopsis thaliana MRS2-type magnesium transporters are highly permissive.

Schmitz J, Tierbach A, Lenz H, Meschenmoser K, Knoop V.

Biochim Biophys Acta. 2013 Sep;1828(9):2032-40. doi: 10.1016/j.bbamem.2013.05.019. Epub 2013 May 31.

22.

Magnesium deficiency phenotypes upon multiple knockout of Arabidopsis thaliana MRS2 clade B genes can be ameliorated by concomitantly reduced calcium supply.

Lenz H, Dombinov V, Dreistein J, Reinhard MR, Gebert M, Knoop V.

Plant Cell Physiol. 2013 Jul;54(7):1118-31. doi: 10.1093/pcp/pct062. Epub 2013 Apr 29.

PMID:
23628997
23.
24.

Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.

Rüdinger M, Volkmar U, Lenz H, Groth-Malonek M, Knoop V.

J Mol Evol. 2012 Feb;74(1-2):37-51. doi: 10.1007/s00239-012-9486-3.

PMID:
22302222
25.

Plant-type mitochondrial RNA editing in the protist Naegleria gruberi.

Rüdinger M, Fritz-Laylin L, Polsakiewicz M, Knoop V.

RNA. 2011 Dec;17(12):2058-62. doi: 10.1261/rna.02962911. Epub 2011 Oct 24.

26.

Exclusive conservation of mitochondrial group II intron nad4i548 among liverworts and its use for phylogenetic studies in this ancient plant clade.

Volkmar U, Groth-Malonek M, Heinrichs J, Muhle H, Polsakiewicz M, Knoop V.

Plant Biol (Stuttg). 2012 Mar;14(2):382-91. doi: 10.1111/j.1438-8677.2011.00499.x. Epub 2011 Aug 25.

PMID:
21973214
27.

Slugs' last meals: molecular identification of sequestered chloroplasts from different algal origins in Sacoglossa (Opisthobranchia, Gastropoda).

Händeler K, Wägele H, Wahrmund U, Rüdinger M, Knoop V.

Mol Ecol Resour. 2010 Nov;10(6):968-78. doi: 10.1111/j.1755-0998.2010.02853.x.

PMID:
21565106
28.

Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica.

Rüdinger M, Szövényi P, Rensing SA, Knoop V.

Plant J. 2011 Jul;67(2):370-80. doi: 10.1111/j.1365-313X.2011.04600.x. Epub 2011 May 11.

30.

A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii.

Grewe F, Herres S, Viehöver P, Polsakiewicz M, Weisshaar B, Knoop V.

Nucleic Acids Res. 2011 Apr;39(7):2890-902. doi: 10.1093/nar/gkq1227. Epub 2010 Dec 7.

31.

When you can't trust the DNA: RNA editing changes transcript sequences.

Knoop V.

Cell Mol Life Sci. 2011 Feb;68(4):567-86. doi: 10.1007/s00018-010-0538-9. Epub 2010 Oct 12. Review.

PMID:
20938709
32.

DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer?

Knoop V, Rüdinger M.

FEBS Lett. 2010 Oct 22;584(20):4287-91. doi: 10.1016/j.febslet.2010.09.041. Epub 2010 Oct 2.

33.

Introducing intron locus cox1i624 for phylogenetic analyses in Bryophytes: on the issue of Takakia as sister genus to all other extant mosses.

Volkmar U, Knoop V.

J Mol Evol. 2010 May;70(5):506-18. doi: 10.1007/s00239-010-9348-9. Epub 2010 May 16.

PMID:
20473660
34.

Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature.

Lenz H, Rüdinger M, Volkmar U, Fischer S, Herres S, Grewe F, Knoop V.

Curr Genet. 2010 Apr;56(2):189-201. doi: 10.1007/s00294-009-0283-5. Epub 2009 Dec 30.

PMID:
20041252
35.

A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments.

Gebert M, Meschenmoser K, Svidová S, Weghuber J, Schweyen R, Eifler K, Lenz H, Weyand K, Knoop V.

Plant Cell. 2009 Dec;21(12):4018-30. doi: 10.1105/tpc.109.070557. Epub 2009 Dec 4.

36.

The phylogeny of mosses - addressing open issues with a new mitochondrial locus: group I intron cobi420.

Wahrmund U, Quandt D, Knoop V.

Mol Phylogenet Evol. 2010 Feb;54(2):417-26. doi: 10.1016/j.ympev.2009.09.031. Epub 2009 Oct 21.

PMID:
19853052
37.

A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii.

Grewe F, Viehoever P, Weisshaar B, Knoop V.

Nucleic Acids Res. 2009 Aug;37(15):5093-104. doi: 10.1093/nar/gkp532. Epub 2009 Jun 23.

38.

RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal.

Rüdinger M, Funk HT, Rensing SA, Maier UG, Knoop V.

Mol Genet Genomics. 2009 May;281(5):473-81. doi: 10.1007/s00438-009-0424-z. Epub 2009 Jan 24.

PMID:
19169711
39.

Tracing plant Mitochondrial DNA evolution: rearrangements of the ancient mitochondrial gene cluster trnA-trnT-nad7 in liverwort phylogeny.

Wahrmund U, Groth-Malonek M, Knoop V.

J Mol Evol. 2008 Jun;66(6):621-9. doi: 10.1007/s00239-008-9114-4. Epub 2008 May 17.

PMID:
18488263
40.

Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts.

Rüdinger M, Polsakiewicz M, Knoop V.

Mol Biol Evol. 2008 Jul;25(7):1405-14. doi: 10.1093/molbev/msn084. Epub 2008 Apr 9.

PMID:
18400790
41.

Clavicipitaceous fungi associated with ergoline alkaloid-containing convolvulaceae.

Ahimsa-Müller MA, Markert A, Hellwig S, Knoop V, Steiner U, Drewke C, Leistner E.

J Nat Prod. 2007 Dec;70(12):1955-60. Epub 2007 Nov 22.

PMID:
18031017
42.

A hypothesis on the identification of the editing enzyme in plant organelles.

Salone V, Rüdinger M, Polsakiewicz M, Hoffmann B, Groth-Malonek M, Szurek B, Small I, Knoop V, Lurin C.

FEBS Lett. 2007 Sep 4;581(22):4132-8. Epub 2007 Aug 10.

43.
44.

The deepest divergences in land plants inferred from phylogenomic evidence.

Qiu YL, Li L, Wang B, Chen Z, Knoop V, Groth-Malonek M, Dombrovska O, Lee J, Kent L, Rest J, Estabrook GF, Hendry TA, Taylor DW, Testa CM, Ambros M, Crandall-Stotler B, Duff RJ, Stech M, Frey W, Quandt D, Davis CC.

Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15511-6. Epub 2006 Oct 9.

45.

Molecular characterization of a seed transmitted clavicipitaceous fungus occurring on dicotyledoneous plants (Convolvulaceae).

Steiner U, Ahimsa-Müller MA, Markert A, Kucht S, Gross J, Kauf N, Kuzma M, Zych M, Lamshöft M, Furmanowa M, Knoop V, Drewke C, Leistner E.

Planta. 2006 Aug;224(3):533-44. Epub 2006 Mar 9.

PMID:
16525783
46.

Transport of magnesium and other divalent cations: evolution of the 2-TM-GxN proteins in the MIT superfamily.

Knoop V, Groth-Malonek M, Gebert M, Eifler K, Weyand K.

Mol Genet Genomics. 2005 Oct;274(3):205-16. Epub 2005 Oct 20.

PMID:
16179994
48.

Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants.

Groth-Malonek M, Pruchner D, Grewe F, Knoop V.

Mol Biol Evol. 2005 Jan;22(1):117-25. Epub 2004 Sep 8.

PMID:
15356283
49.

The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective.

Knoop V.

Curr Genet. 2004 Sep;46(3):123-39. Epub 2004 Aug 6. Review.

PMID:
15300404
50.

Nef proteins from simian immunodeficiency virus-infected chimpanzees interact with p21-activated kinase 2 and modulate cell surface expression of various human receptors.

Kirchhoff F, Schindler M, Bailer N, Renkema GH, Saksela K, Knoop V, Müller-Trutwin MC, Santiago ML, Bibollet-Ruche F, Dittmar MT, Heeney JL, Hahn BH, Münch J.

J Virol. 2004 Jul;78(13):6864-74.

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