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Items: 1 to 50 of 123

1.

RNA Homopolymers Form Higher-Curvature Virus-Like Particles Than Do Normal-Composition RNAs.

Thurm AR, Beren C, Duran-Meza AL, Knobler CM, Gelbart WM.

Biophys J. 2019 Aug 16. pii: S0006-3495(19)30705-2. doi: 10.1016/j.bpj.2019.08.012. [Epub ahead of print]

PMID:
31514968
2.

Delivery of self-amplifying RNA vaccines in in vitro reconstituted virus-like particles.

Biddlecome A, Habte HH, McGrath KM, Sambanthamoorthy S, Wurm M, Sykora MM, Knobler CM, Lorenz IC, Lasaro M, Elbers K, Gelbart WM.

PLoS One. 2019 Jun 4;14(6):e0215031. doi: 10.1371/journal.pone.0215031. eCollection 2019.

3.

Correction for Cadena-Nava et al., "Self-Assembly of Viral Capsid Protein and RNA Molecules of Different Sizes: Requirement for a Specific High Protein/RNA Mass Ratio".

Cadena-Nava RD, Comas-Garcia M, Garmann RF, Rao ALN, Knobler CM, Gelbart WM.

J Virol. 2019 Feb 5;93(4). pii: e01939-18. doi: 10.1128/JVI.01939-18. Print 2019 Feb 15. No abstract available.

4.

The effect of macromolecular crowding on single-round transcription by Escherichia coli RNA polymerase.

Chung S, Lerner E, Jin Y, Kim S, Alhadid Y, Grimaud LW, Zhang IX, Knobler CM, Gelbart WM, Weiss S.

Nucleic Acids Res. 2019 Feb 20;47(3):1440-1450. doi: 10.1093/nar/gky1277.

5.

Protocol for Efficient Cell-Free Synthesis of Cowpea Chlorotic Mottle Virus-Like Particles Containing Heterologous RNAs.

Garmann RF, Knobler CM, Gelbart WM.

Methods Mol Biol. 2018;1776:249-265. doi: 10.1007/978-1-4939-7808-3_17.

PMID:
29869247
6.

The Effect of RNA Secondary Structure on the Self-Assembly of Viral Capsids.

Beren C, Dreesens LL, Liu KN, Knobler CM, Gelbart WM.

Biophys J. 2017 Jul 25;113(2):339-347. doi: 10.1016/j.bpj.2017.06.038. Epub 2017 Jul 12.

7.

Biography of William M. Gelbart.

Ben-Shaul A, Knobler CM, Liu AJ.

J Phys Chem B. 2016 Jul 7;120(26):5789-93. doi: 10.1021/acs.jpcb.6b03370. No abstract available.

PMID:
27385353
8.

William M. Gelbart: An Appreciation.

Ben-Shaul A, Knobler CM, Liu AJ.

J Phys Chem B. 2016 Jul 7;120(26):5787-8. doi: 10.1021/acs.jpcb.6b03856. No abstract available.

PMID:
27385352
9.

Physical Principles in the Self-Assembly of a Simple Spherical Virus.

Garmann RF, Comas-Garcia M, Knobler CM, Gelbart WM.

Acc Chem Res. 2016 Jan 19;49(1):48-55. doi: 10.1021/acs.accounts.5b00350. Epub 2015 Dec 10.

PMID:
26653769
10.

Role of RNA Branchedness in the Competition for Viral Capsid Proteins.

Singaram SW, Garmann RF, Knobler CM, Gelbart WM, Ben-Shaul A.

J Phys Chem B. 2015 Nov 5;119(44):13991-4002. doi: 10.1021/acs.jpcb.5b06445. Epub 2015 Oct 19.

PMID:
26435053
11.

Controlling the extent of viral genome release by a combination of osmotic stress and polyvalent cations.

Jin Y, Knobler CM, Gelbart WM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022708. Epub 2015 Aug 13.

PMID:
26382433
12.

Bacteriophage P22 ejects all of its internal proteins before its genome.

Jin Y, Sdao SM, Dover JA, Porcek NB, Knobler CM, Gelbart WM, Parent KN.

Virology. 2015 Nov;485:128-34. doi: 10.1016/j.virol.2015.07.006. Epub 2015 Aug 1.

13.

A Simple RNA-DNA Scaffold Templates the Assembly of Monofunctional Virus-Like Particles.

Garmann RF, Sportsman R, Beren C, Manoharan VN, Knobler CM, Gelbart WM.

J Am Chem Soc. 2015 Jun 24;137(24):7584-7. doi: 10.1021/jacs.5b03770. Epub 2015 Jun 10.

14.

Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy.

Garmann RF, Gopal A, Athavale SS, Knobler CM, Gelbart WM, Harvey SC.

RNA. 2015 May;21(5):877-86. doi: 10.1261/rna.047506.114. Epub 2015 Mar 9.

15.

Viral RNAs are unusually compact.

Gopal A, Egecioglu DE, Yoffe AM, Ben-Shaul A, Rao AL, Knobler CM, Gelbart WM.

PLoS One. 2014 Sep 4;9(9):e105875. doi: 10.1371/journal.pone.0105875. eCollection 2014.

16.

Role of electrostatics in the assembly pathway of a single-stranded RNA virus.

Garmann RF, Comas-Garcia M, Koay MS, Cornelissen JJ, Knobler CM, Gelbart WM.

J Virol. 2014 Sep;88(18):10472-9. doi: 10.1128/JVI.01044-14. Epub 2014 Jun 25.

17.

Characterization of Viral Capsid Protein Self-Assembly around Short Single-Stranded RNA.

Comas-Garcia M, Garmann RF, Singaram SW, Ben-Shaul A, Knobler CM, Gelbart WM.

J Phys Chem B. 2014 Jul 10;118(27):7510-7519. doi: 10.1021/jp503050z. Epub 2014 Jun 30.

PMID:
24933579
18.

Electrophoretic mobilities of a viral capsid, its capsid protein, and their relation to viral assembly.

Vega-Acosta JR, Cadena-Nava RD, Gelbart WM, Knobler CM, Ruiz-García J.

J Phys Chem B. 2014 Feb 27;118(8):1984-9. doi: 10.1021/jp407379t. Epub 2014 Feb 14.

PMID:
24467401
19.

The assembly pathway of an icosahedral single-stranded RNA virus depends on the strength of inter-subunit attractions.

Garmann RF, Comas-Garcia M, Gopal A, Knobler CM, Gelbart WM.

J Mol Biol. 2014 Mar 6;426(5):1050-60. doi: 10.1016/j.jmb.2013.10.017. Epub 2013 Oct 19.

20.

Reconstituted plant viral capsids can release genes to mammalian cells.

Azizgolshani O, Garmann RF, Cadena-Nava R, Knobler CM, Gelbart WM.

Virology. 2013 Jun 20;441(1):12-7. doi: 10.1016/j.virol.2013.03.001. Epub 2013 Apr 19.

21.

In vitro quantification of the relative packaging efficiencies of single-stranded RNA molecules by viral capsid protein.

Comas-Garcia M, Cadena-Nava RD, Rao AL, Knobler CM, Gelbart WM.

J Virol. 2012 Nov;86(22):12271-82. doi: 10.1128/JVI.01695-12. Epub 2012 Sep 5.

22.

Benz[cd]indol-2(1H)-one at 298 and 100 K.

Khan SI, Knobler CB, Maverick EF.

Acta Crystallogr C. 2012 Jan;68(Pt 1):o1-6. doi: 10.1107/S0108270111050281. Epub 2011 Dec 6.

PMID:
22223280
23.

Self-assembly of viral capsid protein and RNA molecules of different sizes: requirement for a specific high protein/RNA mass ratio.

Cadena-Nava RD, Comas-Garcia M, Garmann RF, Rao AL, Knobler CM, Gelbart WM.

J Virol. 2012 Mar;86(6):3318-26. doi: 10.1128/JVI.06566-11. Epub 2011 Dec 28. Erratum in: J Virol. 2019 Feb 5;93(4):.

24.

Visualizing large RNA molecules in solution.

Gopal A, Zhou ZH, Knobler CM, Gelbart WM.

RNA. 2012 Feb;18(2):284-99. doi: 10.1261/rna.027557.111. Epub 2011 Dec 21.

25.

Metal-organic frameworks of vanadium as catalysts for conversion of methane to acetic acid.

Phan A, Czaja AU, Gándara F, Knobler CB, Yaghi OM.

Inorg Chem. 2011 Aug 15;50(16):7388-90. doi: 10.1021/ic201396m. Epub 2011 Jul 18.

PMID:
21766786
26.

Rescue of infectious particles from preassembled alphavirus nucleocapsid cores.

Snyder JE, Azizgolshani O, Wu B, He Y, Lee AC, Jose J, Suter DM, Knobler CM, Gelbart WM, Kuhn RJ.

J Virol. 2011 Jun;85(12):5773-81. doi: 10.1128/JVI.00039-11. Epub 2011 Apr 6.

27.

Salt-dependent DNA-DNA spacings in intact bacteriophage λ reflect relative importance of DNA self-repulsion and bending energies.

Qiu X, Rau DC, Parsegian VA, Fang LT, Knobler CM, Gelbart WM.

Phys Rev Lett. 2011 Jan 14;106(2):028102. Epub 2011 Jan 12.

28.

Exploiting fluorescent polymers to probe the self-assembly of virus-like particles.

Cadena-Nava RD, Hu Y, Garmann RF, Ng B, Zelikin AN, Knobler CM, Gelbart WM.

J Phys Chem B. 2011 Mar 17;115(10):2386-91. doi: 10.1021/jp1094118. Epub 2011 Feb 22.

PMID:
21338131
29.

Capping-ligand effect on the stability of CdSe quantum dot Langmuir monolayers.

Radhakrishnan C, Lo MK, Knobler CM, Garcia-Garibay MA, Monbouquette HG.

Langmuir. 2011 Mar 15;27(6):2099-103. doi: 10.1021/la104244x. Epub 2011 Feb 17.

PMID:
21329375
30.

Thermal motion of tert-butyl groups III. tert-Butyl substituents in aromatic hydrocarbons, the view from the bottom of the well.

Frey J, Khan SI, Knobler CB, Lightner DA, Maverick EF, Phillips DJ, Rappoport Z, Trueblood KN.

Acta Crystallogr B. 2010 Dec;66(Pt 6):622-38. doi: 10.1107/S0108768110040024. Epub 2010 Nov 10.

PMID:
21099025
31.

Multishell structures of virus coat proteins.

Prinsen P, van der Schoot P, Gelbart WM, Knobler CM.

J Phys Chem B. 2010 Apr 29;114(16):5522-33. doi: 10.1021/jp911040z.

PMID:
20369869
32.

Multiple functional groups of varying ratios in metal-organic frameworks.

Deng H, Doonan CJ, Furukawa H, Ferreira RB, Towne J, Knobler CB, Wang B, Yaghi OM.

Science. 2010 Feb 12;327(5967):846-50. doi: 10.1126/science.1181761.

33.

A metal-organic framework replete with ordered donor-acceptor catenanes.

Li Q, Zhang W, Miljanić OS, Knobler CB, Stoddart JF, Yaghi OM.

Chem Commun (Camb). 2010 Jan 21;46(3):380-2. doi: 10.1039/b919923c. Epub 2009 Dec 3.

PMID:
20066298
34.

Synthesis, structure, and carbon dioxide capture properties of zeolitic imidazolate frameworks.

Phan A, Doonan CJ, Uribe-Romo FJ, Knobler CB, O'Keeffe M, Yaghi OM.

Acc Chem Res. 2010 Jan 19;43(1):58-67. doi: 10.1021/ar900116g.

PMID:
19877580
35.
36.

Synthesis and structure of chemically stable metal-organic polyhedra.

Lu Z, Knobler CB, Furukawa H, Wang B, Liu G, Yaghi OM.

J Am Chem Soc. 2009 Sep 9;131(35):12532-3. doi: 10.1021/ja905101s.

PMID:
19689142
37.

Docking in metal-organic frameworks.

Li Q, Zhang W, Miljanić OS, Sue CH, Zhao YL, Liu L, Knobler CB, Stoddart JF, Yaghi OM.

Science. 2009 Aug 14;325(5942):855-9. doi: 10.1126/science.1175441.

38.

Phase diagram of self-assembled viral capsid protein polymorphs.

Lavelle L, Gingery M, Phillips M, Gelbart WM, Knobler CM, Cadena-Nava RD, Vega-Acosta JR, Pinedo-Torres LA, Ruiz-Garcia J.

J Phys Chem B. 2009 Mar 26;113(12):3813-9.

PMID:
19673134
39.

Virology. Pressurized viruses.

Gelbart WM, Knobler CM.

Science. 2009 Mar 27;323(5922):1682-3. doi: 10.1126/science.1170645. No abstract available.

PMID:
19325104
40.

The force acting on a polymer partially confined in a tube.

Prinsen P, Fang LT, Yoffe AM, Knobler CM, Gelbart WM.

J Phys Chem B. 2009 Mar 26;113(12):3873-9. doi: 10.1021/jp808047u.

PMID:
19296704
41.

Control of pore size and functionality in isoreticular zeolitic imidazolate frameworks and their carbon dioxide selective capture properties.

Banerjee R, Furukawa H, Britt D, Knobler C, O'Keeffe M, Yaghi OM.

J Am Chem Soc. 2009 Mar 25;131(11):3875-7. doi: 10.1021/ja809459e.

PMID:
19292488
42.

Curvature dependence of viral protein structures on encapsidated nanoemulsion droplets.

Chang CB, Knobler CM, Gelbart WM, Mason TG.

ACS Nano. 2008 Feb;2(2):281-6. doi: 10.1021/nn700385z.

PMID:
19206628
43.

Physical chemistry of DNA viruses.

Knobler CM, Gelbart WM.

Annu Rev Phys Chem. 2009;60:367-83. doi: 10.1146/annurev.physchem.59.032607.093728. Review.

PMID:
19046126
44.

Predicting the sizes of large RNA molecules.

Yoffe AM, Prinsen P, Gopal A, Knobler CM, Gelbart WM, Ben-Shaul A.

Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16153-8. doi: 10.1073/pnas.0808089105. Epub 2008 Oct 9.

45.

Synthesis and structure of a new heptaborate oxoanion isomer: B7O9(OH)5(2-).

Schubert DM, Visi MZ, Khan S, Knobler CB.

Inorg Chem. 2008 Jun 2;47(11):4740-5. doi: 10.1021/ic800068t. Epub 2008 Apr 17.

PMID:
18416525
46.

High-throughput synthesis of zeolitic imidazolate frameworks and application to CO2 capture.

Banerjee R, Phan A, Wang B, Knobler C, Furukawa H, O'Keeffe M, Yaghi OM.

Science. 2008 Feb 15;319(5865):939-43. doi: 10.1126/science.1152516.

47.

Crystalline alcoholamine borates and the triborate monoanion.

Schubert DM, Visi MZ, Knobler CB.

Inorg Chem. 2008 Mar 17;47(6):2017-23. doi: 10.1021/ic7020098. Epub 2008 Feb 14.

PMID:
18271534
48.

Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size.

Hu Y, Zandi R, Anavitarte A, Knobler CM, Gelbart WM.

Biophys J. 2008 Feb 15;94(4):1428-36. Epub 2007 Nov 2.

49.

Effects of salt concentrations and bending energy on the extent of ejection of phage genomes.

Evilevitch A, Fang LT, Yoffe AM, Castelnovo M, Rau DC, Parsegian VA, Gelbart WM, Knobler CM.

Biophys J. 2008 Feb 1;94(3):1110-20. Epub 2007 Sep 21.

50.

Failure of viral shells.

Klug WS, Bruinsma RF, Michel JP, Knobler CM, Ivanovska IL, Schmidt CF, Wuite GJ.

Phys Rev Lett. 2006 Dec 1;97(22):228101. Epub 2006 Nov 27.

PMID:
17155845

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