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Items: 1 to 50 of 2417

1.

Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians.

Allaband C, McDonald D, Vázquez-Baeza Y, Minich JJ, Tripathi A, Brenner DA, Loomba R, Smarr L, Sandborn WJ, Schnabl B, Dorrestein P, Zarrinpar A, Knight R.

Clin Gastroenterol Hepatol. 2018 Sep 18. pii: S1542-3565(18)31008-5. doi: 10.1016/j.cgh.2018.09.017. [Epub ahead of print] Review.

PMID:
30240894
2.

Human posterior parietal cortex responds to visual stimuli as early as peristriate occipital cortex.

Regev TI, Winawer J, Gerber EM, Knight RT, Deouell LY.

Eur J Neurosci. 2018 Sep 21. doi: 10.1111/ejn.14164. [Epub ahead of print]

PMID:
30240547
3.

Developing and sustaining a Community of Practice through Twitter for work-based learning.

Attenborough J, Knight RA, Brook J.

Evid Based Nurs. 2018 Sep 18. pii: ebnurs-2018-102981. doi: 10.1136/eb-2018-102981. [Epub ahead of print] No abstract available.

PMID:
30228105
4.

Hippocampal CA1 gamma power predicts the precision of spatial memory judgments.

Stevenson RF, Zheng J, Mnatsakanyan L, Vadera S, Knight RT, Lin JJ, Yassa MA.

Proc Natl Acad Sci U S A. 2018 Sep 17. pii: 201805724. doi: 10.1073/pnas.1805724115. [Epub ahead of print]

PMID:
30224452
5.

Encoding of Multiple Reward-Related Computations in Transient and Sustained High-Frequency Activity in Human OFC.

Saez I, Lin J, Stolk A, Chang E, Parvizi J, Schalk G, Knight RT, Hsu M.

Curr Biol. 2018 Aug 18. pii: S0960-9822(18)30975-8. doi: 10.1016/j.cub.2018.07.045. [Epub ahead of print]

PMID:
30220499
6.

Systematic comparison between a wireless EEG system with dry electrodes and a wired EEG system with wet electrodes.

Kam JWY, Griffin S, Shen A, Patel S, Hinrichs H, Heinze HJ, Deouell LY, Knight RT.

Neuroimage. 2018 Sep 12;184:119-129. doi: 10.1016/j.neuroimage.2018.09.012. [Epub ahead of print]

PMID:
30218769
7.

Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus).

Minich JJ, Zhu Q, Xu ZZ, Amir A, Ngochera M, Simwaka M, Allen EE, Zidana H, Knight R.

Microbiologyopen. 2018 Aug 31:e00716. doi: 10.1002/mbo3.716. [Epub ahead of print]

8.

Regional variation limits applications of healthy gut microbiome reference ranges and disease models.

He Y, Wu W, Zheng HM, Li P, McDonald D, Sheng HF, Chen MX, Chen ZH, Ji GY, Zheng ZD, Mujagond P, Chen XJ, Rong ZH, Chen P, Lyu LY, Wang X, Wu CB, Yu N, Xu YJ, Yin J, Raes J, Knight R, Ma WJ, Zhou HW.

Nat Med. 2018 Aug 27. doi: 10.1038/s41591-018-0164-x. [Epub ahead of print]

PMID:
30150716
9.

Neural Mechanisms of Sustained Attention Are Rhythmic.

Helfrich RF, Fiebelkorn IC, Szczepanski SM, Lin JJ, Parvizi J, Knight RT, Kastner S.

Neuron. 2018 Aug 22;99(4):854-865.e5. doi: 10.1016/j.neuron.2018.07.032.

PMID:
30138591
10.

Comparing primary care pediatricians' perceptions of clinics with and without integrated behavioral health.

Lancaster B, Cook A, Bruni T, Sturza J, Sevecke J, Ham H, Knight R, Hoffses K, Wickham CA, Orringer KA.

Prim Health Care Res Dev. 2018 Aug 22:1-5. doi: 10.1017/S1463423618000579. [Epub ahead of print]

PMID:
30132430
11.

Links between environment, diet, and the hunter-gatherer microbiome.

Fragiadakis GK, Smits SA, Sonnenburg ED, Van Treuren W, Reid G, Knight R, Manjurano A, Changalucha J, Dominguez-Bello MG, Leach J, Sonnenburg JL.

Gut Microbes. 2018 Aug 17:1-12. doi: 10.1080/19490976.2018.1494103. [Epub ahead of print]

PMID:
30118385
12.

Post-mortem magnetic resonance imaging in patients with suspected prion disease: Pathological confirmation, sensitivity, specificity and observer reliability. A national registry.

Gibson LM, Chappell FM, Summers D, Collie DA, Sellar R, Best J, Knight R, Ironside JW, Wardlaw JM.

PLoS One. 2018 Aug 7;13(8):e0201434. doi: 10.1371/journal.pone.0201434. eCollection 2018.

13.

Are microbiome studies ready for hypothesis-driven research?

Tripathi A, Marotz C, Gonzalez A, Vázquez-Baeza Y, Song SJ, Bouslimani A, McDonald D, Zhu Q, Sanders JG, Smarr L, Dorrestein PC, Knight R.

Curr Opin Microbiol. 2018 Jul 27;44:61-69. doi: 10.1016/j.mib.2018.07.002. [Epub ahead of print] Review.

PMID:
30059804
14.

Corruption practices in drug prescribing in Vietnam - an analysis based on qualitative interviews.

Nguyen TA, Knight R, Mant A, Razee H, Brooks G, Dang TH, Roughead EE.

BMC Health Serv Res. 2018 Jul 28;18(1):587. doi: 10.1186/s12913-018-3384-3.

15.

Criminalization of HIV non-disclosure: Narratives from young men living in Vancouver, Canada.

Knight R, Krüsi A, Carson A, Fast D, Shannon K, Shoveller J.

PLoS One. 2018 Jul 24;13(7):e0201110. doi: 10.1371/journal.pone.0201110. eCollection 2018.

16.

Who's challenging who training for staff empathy towards adults with challenging behaviour: cluster randomised controlled trial.

Hastings RP, Gillespie D, Flynn S, McNamara R, Taylor Z, Knight R, Randell E, Richards L, Moody G, Mitchell A, Przybylak P, Williams B, Hunt PH.

J Intellect Disabil Res. 2018 Sep;62(9):798-813. doi: 10.1111/jir.12536. Epub 2018 Jul 23.

PMID:
30033655
17.

Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism.

Zarrinpar A, Chaix A, Xu ZZ, Chang MW, Marotz CA, Saghatelian A, Knight R, Panda S.

Nat Commun. 2018 Jul 20;9(1):2872. doi: 10.1038/s41467-018-05336-9.

18.

Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota.

Hua ZS, Qu YN, Zhu Q, Zhou EM, Qi YL, Yin YR, Rao YZ, Tian Y, Li YX, Liu L, Castelle CJ, Hedlund BP, Shu WS, Knight R, Li WJ.

Nat Commun. 2018 Jul 19;9(1):2832. doi: 10.1038/s41467-018-05284-4.

19.

Unexplained fever after pancreas transplantation.

Klasek R, Kuten SA, Patel SJ, Graviss EA, Nguyen DT, Hobeika MJ, Gaber OA, Podder H, Knight RJ.

Clin Transplant. 2018 Jul 17:e13351. doi: 10.1111/ctr.13351. [Epub ahead of print]

PMID:
30019349
20.

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.

Amato KR, G Sanders J, Song SJ, Nute M, Metcalf JL, Thompson LR, Morton JT, Amir A, J McKenzie V, Humphrey G, Gogul G, Gaffney J, L Baden A, A O Britton G, P Cuozzo F, Di Fiore A, J Dominy N, L Goldberg T, Gomez A, Kowalewski MM, J Lewis R, Link A, L Sauther M, Tecot S, A White B, E Nelson K, M Stumpf R, Knight R, R Leigh S.

ISME J. 2018 Jul 11. doi: 10.1038/s41396-018-0175-0. [Epub ahead of print]

PMID:
29995839
21.

Integrated analysis of anatomical and electrophysiological human intracranial data.

Stolk A, Griffin S, van der Meij R, Dewar C, Saez I, Lin JJ, Piantoni G, Schoffelen JM, Knight RT, Oostenveld R.

Nat Protoc. 2018 Jul;13(7):1699-1723. doi: 10.1038/s41596-018-0009-6.

PMID:
29988107
22.

Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus.

Lavrinienko A, Mappes T, Tukalenko E, Mousseau TA, Møller AP, Knight R, Morton JT, Thompson LR, Watts PC.

ISME J. 2018 Jul 9. doi: 10.1038/s41396-018-0214-x. [Epub ahead of print]

PMID:
29988064
23.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
24.

Decoding Inner Speech Using Electrocorticography: Progress and Challenges Toward a Speech Prosthesis.

Martin S, Iturrate I, Millán JDR, Knight RT, Pasley BN.

Front Neurosci. 2018 Jun 21;12:422. doi: 10.3389/fnins.2018.00422. eCollection 2018. Review.

25.

Author Correction: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity.

Shalapour S, Lin XJ, Bastian IN, Brain J, Burt AD, Aksenov AA, Vrbanac AF, Li W, Perkins A, Matsutani T, Zhong Z, Dhar D, Navas-Molina JA, Xu J, Loomba R, Downes M, Yu RT, Evans RM, Dorrestein PC, Knight R, Benner C, Anstee QM, Karin M.

Nature. 2018 Sep;561(7721):E1. doi: 10.1038/s41586-018-0304-y.

PMID:
29973714
26.

Persistent neuronal activity in human prefrontal cortex links perception and action.

Haller M, Case J, Crone NE, Chang EF, King-Stephens D, Laxer KD, Weber PB, Parvizi J, Knight RT, Shestyuk AY.

Nat Hum Behav. 2018 Jan;2(1):80-91. doi: 10.1038/s41562-017-0267-2. Epub 2017 Dec 18.

27.

Ancient Thali Diet: Gut Microbiota, Immunity, and Health.

Shondelmyer K, Knight R, Sanivarapu A, Ogino S, Vanamala JKP.

Yale J Biol Med. 2018 Jun 28;91(2):177-184. eCollection 2018 Jun. Review.

28.

Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell 'Omics.

Maurer-Alcalá XX, Yan Y, Pilling OA, Knight R, Katz LA.

Genome Biol Evol. 2018 Aug 1;10(8):1927-1939. doi: 10.1093/gbe/evy133.

29.

ZNF281 inhibits neuronal differentiation and is a prognostic marker for neuroblastoma.

Pieraccioli M, Nicolai S, Pitolli C, Agostini M, Antonov A, Malewicz M, Knight RA, Raschellà G, Melino G.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):7356-7361. doi: 10.1073/pnas.1801435115. Epub 2018 Jun 25.

30.

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

Walters WA, Jin Z, Youngblut N, Wallace JG, Sutter J, Zhang W, González-Peña A, Peiffer J, Koren O, Shi Q, Knight R, Glavina Del Rio T, Tringe SG, Buckler ES, Dangl JL, Ley RE.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):7368-7373. doi: 10.1073/pnas.1800918115. Epub 2018 Jun 25.

31.

In silico and ex vivo approaches indicate immune pressure on capsid and non-capsid regions of coxsackie B viruses in the human system.

Kundu R, Knight R, Dunga M, Peakman M.

PLoS One. 2018 Jun 20;13(6):e0199323. doi: 10.1371/journal.pone.0199323. eCollection 2018.

32.

Low-frequency cortical activity is a neuromodulatory target that tracks recovery after stroke.

Ramanathan DS, Guo L, Gulati T, Davidson G, Hishinuma AK, Won SJ, Knight RT, Chang EF, Swanson RA, Ganguly K.

Nat Med. 2018 Aug;24(8):1257-1267. doi: 10.1038/s41591-018-0058-y. Epub 2018 Jun 18.

PMID:
29915259
33.

Diagnosis of Methionine/Valine Variant Creutzfeldt-Jakob Disease by Protein Misfolding Cyclic Amplification.

Bougard D, Bélondrade M, Mayran C, Bruyère-Ostells L, Lehmann S, Fournier-Wirth C, Knight RS, Will RG, Green AJE.

Emerg Infect Dis. 2018 Jul;24(7):1364-1366. doi: 10.3201/eid2407.172105.

34.

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.

Tripathi A, Melnik AV, Xue J, Poulsen O, Meehan MJ, Humphrey G, Jiang L, Ackermann G, McDonald D, Zhou D, Knight R, Dorrestein PC, Haddad GG.

mSystems. 2018 Jun 5;3(3). pii: e00020-18. doi: 10.1128/mSystems.00020-18. eCollection 2018 May-Jun.

35.

Short- and midterm results for internal jugular vein extension for short right renal vein kidney transplant.

Lu T, Yi SG, Bismuth J, Knight RJ, Gaber AO, Bechara CF.

Clin Transplant. 2018 Aug;32(8):e13312. doi: 10.1111/ctr.13312. Epub 2018 Jun 29.

PMID:
29888810
36.

Variant Creutzfeldt-Jakob disease.

Brandel JP, Knight R.

Handb Clin Neurol. 2018;153:191-205. doi: 10.1016/B978-0-444-63945-5.00011-8.

PMID:
29887136
37.

HIV Incidence Among Men Who Have Sex with Men and Inject Drugs in a Canadian Setting.

Scheim AI, Nosova E, Knight R, Hayashi K, Kerr T.

AIDS Behav. 2018 Jun 6. doi: 10.1007/s10461-018-2185-3. [Epub ahead of print]

PMID:
29876756
38.

Overpumping leads to California groundwater arsenic threat.

Smith R, Knight R, Fendorf S.

Nat Commun. 2018 Jun 5;9(1):2089. doi: 10.1038/s41467-018-04475-3.

39.

Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis.

He Y, Kosciolek T, Tang J, Zhou Y, Li Z, Ma X, Zhu Q, Yuan N, Yuan L, Li C, Jin K, Knight R, Tsuang MT, Chen X.

Eur Psychiatry. 2018 Sep;53:37-45. doi: 10.1016/j.eurpsy.2018.05.011. Epub 2018 Jun 2.

PMID:
29870894
41.

The gut microbiome of nonhuman primates: Lessons in ecology and evolution.

Clayton JB, Gomez A, Amato K, Knights D, Travis DA, Blekhman R, Knight R, Leigh S, Stumpf R, Wolf T, Glander KE, Cabana F, Johnson TJ.

Am J Primatol. 2018 Jun;80(6):e22867. doi: 10.1002/ajp.22867. Epub 2018 Jun 4. Review.

PMID:
29862519
42.

A lexical semantic hub for heteromodal naming in middle fusiform gyrus.

Forseth KJ, Kadipasaoglu CM, Conner CR, Hickok G, Knight RT, Tandon N.

Brain. 2018 Jul 1;141(7):2112-2126. doi: 10.1093/brain/awy120.

PMID:
29860298
43.

TAp73 contributes to the oxidative stress response by regulating protein synthesis.

Marini A, Rotblat B, Sbarrato T, Niklison-Chirou MV, Knight JRP, Dudek K, Jones C, Bushell M, Knight RA, Amelio I, Willis AE, Melino G.

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):6219-6224. doi: 10.1073/pnas.1718531115. Epub 2018 May 29.

44.

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium , Knight R.

mSystems. 2018 May 15;3(3). pii: e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.

45.

Methods for phylogenetic analysis of microbiome data.

Washburne AD, Morton JT, Sanders J, McDonald D, Zhu Q, Oliverio AM, Knight R.

Nat Microbiol. 2018 Jun;3(6):652-661. doi: 10.1038/s41564-018-0156-0. Epub 2018 May 24. Review.

PMID:
29795540
46.

Best practices for analysing microbiomes.

Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, Swafford AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG, Dorrestein PC.

Nat Rev Microbiol. 2018 Jul;16(7):410-422. doi: 10.1038/s41579-018-0029-9. Review.

PMID:
29795328
47.

Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.

Michaud JM, Thompson LR, Kaul D, Espinoza JL, Richter RA, Xu ZZ, Lee C, Pham KM, Beall CM, Malfatti F, Azam F, Knight R, Burkart MD, Dupont CL, Prather KA.

Nat Commun. 2018 May 22;9(1):2017. doi: 10.1038/s41467-018-04409-z.

48.

Bacterial community changes in an industrial algae production system.

Fulbright SP, Robbins-Pianka A, Berg-Lyons D, Knight R, Reardon KF, Chisholm ST.

Algal Res. 2018 Apr;31:147-156. doi: 10.1016/j.algal.2017.09.010. Epub 2018 Feb 21.

PMID:
29785358
49.

Publisher Correction: The gut-liver axis and the intersection with the microbiome.

Tripathi A, Debelius J, Brenner DA, Karin M, Loomba R, Schnabl B, Knight R.

Nat Rev Gastroenterol Hepatol. 2018 May 21. doi: 10.1038/s41575-018-0031-8. [Epub ahead of print]

PMID:
29785003
50.

Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas.

Lapek JD Jr, Mills RH, Wozniak JM, Campeau A, Fang RH, Wei X, van de Groep K, Perez-Lopez A, van Sorge NM, Raffatellu M, Knight R, Zhang L, Gonzalez DJ.

Cell Syst. 2018 May 23;6(5):579-592.e4. doi: 10.1016/j.cels.2018.04.010. Epub 2018 May 16.

PMID:
29778837

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