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Items: 34


Diversity of Methane Cycling Microorganisms in Soils and Their Relation to Oxygen.

Knief C.

Curr Issues Mol Biol. 2019 Jun 5;33:23-56. doi: 10.21775/cimb.033.023. [Epub ahead of print]


Temperature and soil moisture control microbial community composition in an arctic-alpine ecosystem along elevational and micro-topographic gradients.

Frindte K, Pape R, Werner K, Löffler J, Knief C.

ISME J. 2019 Aug;13(8):2031-2043. doi: 10.1038/s41396-019-0409-9. Epub 2019 Apr 5.


Crop Rotation and Straw Application Impact Microbial Communities in Italian and Philippine Soils and the Rhizosphere of Zea mays.

Maarastawi SA, Frindte K, Linnartz M, Knief C.

Front Microbiol. 2018 Jun 15;9:1295. doi: 10.3389/fmicb.2018.01295. eCollection 2018.


Editorial: The Impact of Microorganisms on Consumption of Atmospheric Trace Gases.

Kolb S, Horn MA, Murrell JC, Knief C.

Front Microbiol. 2017 Sep 28;8:1856. doi: 10.3389/fmicb.2017.01856. eCollection 2017. No abstract available.


Characterization of the first rice paddy cluster I isolate, Methyloterricola oryzae gen. nov., sp. nov. and amended description of Methylomagnum ishizawai.

Frindte K, Maarastawi SA, Lipski A, Hamacher J, Knief C.

Int J Syst Evol Microbiol. 2017 Nov;67(11):4507-4514. doi: 10.1099/ijsem.0.002319. Epub 2017 Oct 6.


Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems.

Frindte K, Kalyuzhnaya MG, Bringel F, Dunfield PF, Jetten MSM, Khmelenina VN, Klotz MG, Murrell JC, Op den Camp HJM, Sakai Y, Semrau JD, Shapiro N, DiSpirito AA, Stein LY, Svenning MM, Trotsenko YA, Vuilleumier S, Woyke T, Knief C.

Genome Announc. 2017 Aug 17;5(33). pii: e00526-17. doi: 10.1128/genomeA.00526-17.


Effects of Elevated Tropospheric Ozone Concentration on the Bacterial Community in the Phyllosphere and Rhizoplane of Rice.

Ueda Y, Frindte K, Knief C, Ashrafuzzaman M, Frei M.

PLoS One. 2016 Sep 19;11(9):e0163178. doi: 10.1371/journal.pone.0163178. eCollection 2016.


Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems.

Flynn JD, Hirayama H, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Khmelenina VN, Trotsenko YA, Murrell JC, Semrau JD, Svenning MM, Stein LY, Kyrpides N, Shapiro N, Woyke T, Bringel F, Vuilleumier S, DiSpirito AA, Kalyuzhnaya MG.

Genome Announc. 2016 Jan 21;4(1). pii: e01629-15. doi: 10.1128/genomeA.01629-15.


Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker.

Knief C.

Front Microbiol. 2015 Dec 15;6:1346. doi: 10.3389/fmicb.2015.01346. eCollection 2015. Review.


Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki.

Sharp CE, Smirnova AV, Kalyuzhnaya MG, Bringel F, Hirayama H, Jetten MS, Khmelenina VN, Klotz MG, Knief C, Kyrpides N, Op den Camp HJ, Reshetnikov AS, Sakai Y, Shapiro N, Trotsenko YA, Vuilleumier S, Woyke T, Dunfield PF.

Genome Announc. 2015 Jun 11;3(3). pii: e00644-15. doi: 10.1128/genomeA.00644-15.


Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.

Hamilton R, Kits KD, Ramonovskaya VA, Rozova ON, Yurimoto H, Iguchi H, Khmelenina VN, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Bringel F, Vuilleumier S, Svenning MM, Shapiro N, Woyke T, Trotsenko YA, Stein LY, Kalyuzhnaya MG.

Genome Announc. 2015 Jun 4;3(3). pii: e00515-15. doi: 10.1128/genomeA.00515-15.


Analysis of plant microbe interactions in the era of next generation sequencing technologies.

Knief C.

Front Plant Sci. 2014 May 21;5:216. doi: 10.3389/fpls.2014.00216. eCollection 2014. Review.


Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium.

Khmelenina VN, Beck DA, Munk C, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Scholz M, Teshima H, Xu Y, Chain P, Bringel F, Vuilleumier S, Dispirito A, Dunfield P, Jetten MS, Klotz MG, Knief C, Murrell JC, Op den Camp HJ, Sakai Y, Semrau J, Svenning M, Stein LY, Trotsenko YA, Kalyuzhnaya MG.

Genome Announc. 2013 Jun 27;1(4). pii: e00053-13. doi: 10.1128/genomeA.00053-13.


Complete genome sequences of six strains of the genus Methylobacterium.

Marx CJ, Bringel F, Chistoserdova L, Moulin L, Farhan Ul Haque M, Fleischman DE, Gruffaz C, Jourand P, Knief C, Lee MC, Muller EE, Nadalig T, Peyraud R, Roselli S, Russ L, Goodwin LA, Ivanova N, Kyrpides N, Lajus A, Land ML, Médigue C, Mikhailova N, Nolan M, Woyke T, Stolyar S, Vorholt JA, Vuilleumier S.

J Bacteriol. 2012 Sep;194(17):4746-8. doi: 10.1128/JB.01009-12.


Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice.

Knief C, Delmotte N, Chaffron S, Stark M, Innerebner G, Wassmann R, von Mering C, Vorholt JA.

ISME J. 2012 Jul;6(7):1378-90. doi: 10.1038/ismej.2011.192. Epub 2011 Dec 22.


Characterization of Methylobacterium strains isolated from the phyllosphere and description of Methylobacterium longum sp. nov.

Knief C, Dengler V, Bodelier PL, Vorholt JA.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):169-83. doi: 10.1007/s10482-011-9650-6. Epub 2011 Oct 11.


Bacterial adaptation to life in association with plants - A proteomic perspective from culture to in situ conditions.

Knief C, Delmotte N, Vorholt JA.

Proteomics. 2011 Aug;11(15):3086-105. doi: 10.1002/pmic.201000818. Epub 2011 May 5. Review.


Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system.

Innerebner G, Knief C, Vorholt JA.

Appl Environ Microbiol. 2011 May;77(10):3202-10. doi: 10.1128/AEM.00133-11. Epub 2011 Mar 18.


Competitiveness of diverse Methylobacterium strains in the phyllosphere of Arabidopsis thaliana and identification of representative models, including M. extorquens PA1.

Knief C, Frances L, Vorholt JA.

Microb Ecol. 2010 Aug;60(2):440-52. doi: 10.1007/s00248-010-9725-3. Epub 2010 Aug 11.


Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere.

Knief C, Ramette A, Frances L, Alonso-Blanco C, Vorholt JA.

ISME J. 2010 Jun;4(6):719-28. doi: 10.1038/ismej.2010.9. Epub 2010 Feb 18.


An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules.

Delmotte N, Ahrens CH, Knief C, Qeli E, Koch M, Fischer HM, Vorholt JA, Hennecke H, Pessi G.

Proteomics. 2010 Apr;10(7):1391-400. doi: 10.1002/pmic.200900710.


Community proteogenomics reveals insights into the physiology of phyllosphere bacteria.

Delmotte N, Knief C, Chaffron S, Innerebner G, Roschitzki B, Schlapbach R, von Mering C, Vorholt JA.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16428-33. doi: 10.1073/pnas.0905240106. Epub 2009 Sep 4.


Cultivation-independent characterization of methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis.

Knief C, Frances L, Cantet F, Vorholt JA.

Appl Environ Microbiol. 2008 Apr;74(7):2218-28. doi: 10.1128/AEM.02532-07. Epub 2008 Feb 8.


The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration.

Knief C, Kolb S, Bodelier PL, Lipski A, Dunfield PF.

Environ Microbiol. 2006 Feb;8(2):321-33.


Response and adaptation of different methanotrophic bacteria to low methane mixing ratios.

Knief C, Dunfield PF.

Environ Microbiol. 2005 Sep;7(9):1307-17.


Diversity of methanotrophic bacteria in tropical upland soils under different land uses.

Knief C, Vanitchung S, Harvey NW, Conrad R, Dunfield PF, Chidthaisong A.

Appl Environ Microbiol. 2005 Jul;71(7):3826-31.


Methylocella species are facultatively methanotrophic.

Dedysh SN, Knief C, Dunfield PF.

J Bacteriol. 2005 Jul;187(13):4665-70.


Methanotrophic bacteria in boreal forest soil after fire.

Jaatinen K, Knief C, Dunfield PF, Yrjålå K, Fritze H.

FEMS Microbiol Ecol. 2004 Nov 1;50(3):195-202. doi: 10.1016/j.femsec.2004.06.013.


Diversity and activity of methanotrophic bacteria in different upland soils.

Knief C, Lipski A, Dunfield PF.

Appl Environ Microbiol. 2003 Nov;69(11):6703-14.


Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays.

Kolb S, Knief C, Stubner S, Conrad R.

Appl Environ Microbiol. 2003 May;69(5):2423-9.


Stable-isotope-based labeling of styrene-degrading microorganisms in biofilters.

Alexandrino M, Knief C, Lipski A.

Appl Environ Microbiol. 2001 Oct;67(10):4796-804.

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