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Items: 22

1.

Inter- and Intra-patient Variability Over Time of Lesional Skin Microbiota in Adult Patients with Atopic Dermatitis.

van den Munckhof EHA, Niemeyer-van der Kolk T, van der Wall H, van Alewijk DCJG, van Doorn MBA, Burggraaf J, Buters TP, Becker MJ, Feiss GL, Quint WGV, van Doorn LJ, Knetsch CW, Rissmann R.

Acta Derm Venereol. 2019 Nov 19. doi: 10.2340/00015555-3373. [Epub ahead of print] No abstract available.

2.

Impact of Host DNA and Sequencing Depth on the Taxonomic Resolution of Whole Metagenome Sequencing for Microbiome Analysis.

Pereira-Marques J, Hout A, Ferreira RM, Weber M, Pinto-Ribeiro I, van Doorn LJ, Knetsch CW, Figueiredo C.

Front Microbiol. 2019 Jun 12;10:1277. doi: 10.3389/fmicb.2019.01277. eCollection 2019.

3.

Comparison of Amsel criteria, Nugent score, culture and two CE-IVD marked quantitative real-time PCRs with microbiota analysis for the diagnosis of bacterial vaginosis.

van den Munckhof EHA, van Sitter RL, Boers KE, Lamont RF, Te Witt R, le Cessie S, Knetsch CW, van Doorn LJ, Quint WGV, Molijn A, Leverstein-van Hall MA.

Eur J Clin Microbiol Infect Dis. 2019 May;38(5):959-966. doi: 10.1007/s10096-019-03538-7. Epub 2019 Mar 22.

PMID:
30903536
4.

Dynamics of the Gut Microbiota in Children Receiving Selective or Total Gut Decontamination Treatment during Hematopoietic Stem Cell Transplantation.

Bekker V, Zwittink RD, Knetsch CW, Sanders IMJG, Berghuis D, Heidt PJ, Vossen JMJJ, de Vos WM, Belzer C, Bredius RGM, Van't Hof PJ, Lankester AC, Kuijper EJ.

Biol Blood Marrow Transplant. 2019 Jun;25(6):1164-1171. doi: 10.1016/j.bbmt.2019.01.037. Epub 2019 Feb 5.

PMID:
30731251
5.

Proteomic identification of Axc, a novel beta-lactamase with carbapenemase activity in a meropenem-resistant clinical isolate of Achromobacter xylosoxidans.

Fleurbaaij F, Henneman AA, Corver J, Knetsch CW, Smits WK, Nauta ST, Giera M, Dragan I, Kumar N, Lawley TD, Verhoeven A, van Leeuwen HC, Kuijper EJ, Hensbergen PJ.

Sci Rep. 2018 May 25;8(1):8181. doi: 10.1038/s41598-018-26079-z.

6.

Dietary trehalose enhances virulence of epidemic Clostridium difficile.

Collins J, Robinson C, Danhof H, Knetsch CW, van Leeuwen HC, Lawley TD, Auchtung JM, Britton RA.

Nature. 2018 Jan 18;553(7688):291-294. doi: 10.1038/nature25178. Epub 2018 Jan 3.

7.

Ribotype 078 Clostridium difficile infection incidence in Dutch hospitals is not associated with provincial pig farming: Results from a national sentinel surveillance, 2009-2015.

van Dorp SM, de Greeff SC, Harmanus C, Sanders IMJG, Dekkers OM, Knetsch CW, Kampinga GA, Notermans DW, Kuijper EJ.

PLoS One. 2017 Dec 29;12(12):e0189183. doi: 10.1371/journal.pone.0189183. eCollection 2017.

8.

Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans.

Knetsch CW, Kumar N, Forster SC, Connor TR, Browne HP, Harmanus C, Sanders IM, Harris SR, Turner L, Morris T, Perry M, Miyajima F, Roberts P, Pirmohamed M, Songer JG, Weese JS, Indra A, Corver J, Rupnik M, Wren BW, Riley TV, Kuijper EJ, Lawley TD.

J Clin Microbiol. 2018 Feb 22;56(3). pii: e01384-17. doi: 10.1128/JCM.01384-17. Print 2018 Mar.

9.

An outbreak of Clostridium difficile infections due to new PCR ribotype 826: epidemiologic and microbiologic analyses.

Crobach MJT, Voor In 't Holt AF, Knetsch CW, van Dorp SM, Bras W, Harmanus C, Kuijper EJ, Vos MC.

Clin Microbiol Infect. 2018 Mar;24(3):309.e1-309.e4. doi: 10.1016/j.cmi.2017.08.014. Epub 2017 Aug 19.

10.

Prevalence of colistin resistance gene (mcr-1) containing Enterobacteriaceae in feces of patients attending a tertiary care hospital and detection of a mcr-1 containing, colistin susceptible E. coli.

Terveer EM, Nijhuis RHT, Crobach MJT, Knetsch CW, Veldkamp KE, Gooskens J, Kuijper EJ, Claas ECJ.

PLoS One. 2017 Jun 2;12(6):e0178598. doi: 10.1371/journal.pone.0178598. eCollection 2017.

11.

Fecal Microbiota Transfer for Multidrug-Resistant Gram-Negatives: A Clinical Success Combined With Microbiological Failure.

Stalenhoef JE, Terveer EM, Knetsch CW, Van't Hof PJ, Vlasveld IN, Keller JJ, Visser LG, Kuijper EJ.

Open Forum Infect Dis. 2017 Mar 13;4(2):ofx047. doi: 10.1093/ofid/ofx047. eCollection 2017 Spring.

12.

Molecular typing and antimicrobial susceptibility testing to six antimicrobials of Clostridium difficile isolates from three Czech hospitals in Eastern Bohemia in 2011-2012.

Beran V, Kuijper EJ, Harmanus C, Sanders IM, van Dorp SM, Knetsch CW, Janeckova J, Seidelova A, Barekova L, Tvrdik J, Chmelar D, Ciznar I.

Folia Microbiol (Praha). 2017 Sep;62(5):445-451. doi: 10.1007/s12223-017-0515-x. Epub 2017 Mar 22.

PMID:
28332133
13.

Transmissibility of Clostridium difficile Without Contact Isolation: Results From a Prospective Observational Study With 451 Patients.

Widmer AF, Frei R, Erb S, Stranden A, Kuijper EJ, Knetsch CW, Tschudin-Sutter S.

Clin Infect Dis. 2017 Feb 15;64(4):393-400. doi: 10.1093/cid/ciw758.

PMID:
28172613
14.

Clinical and Microbiological Characteristics of Clostridium difficile Infection Among Hospitalized Children in the Netherlands.

van Dorp SM, Smajlović E, Knetsch CW, Notermans DW, de Greeff SC, Kuijper EJ.

Clin Infect Dis. 2017 Jan 15;64(2):192-198. doi: 10.1093/cid/ciw699. Epub 2016 Oct 19.

PMID:
27986664
15.

An Outbreak of Clostridium difficile Ribotype 027 Associated with Length of Stay in the Intensive Care Unit and Use of Selective Decontamination of the Digestive Tract: A Case Control Study.

van Beurden YH, Dekkers OM, Bomers MK, Kaiser AM, van Houdt R, Knetsch CW, Girbes AR, Mulder CJ, Vandenbroucke-Grauls CM.

PLoS One. 2016 Aug 17;11(8):e0160778. doi: 10.1371/journal.pone.0160778. eCollection 2016.

16.

Typing Pseudomonas aeruginosa Isolates with Ultrahigh Resolution MALDI-FTICR Mass Spectrometry.

Fleurbaaij F, Kraakman ME, Claas EC, Knetsch CW, van Leeuwen HC, van der Burgt YE, Veldkamp KE, Vos MC, Goessens W, Mertens BJ, Kuijper EJ, Hensbergen PJ, Nicolardi S.

Anal Chem. 2016 Jun 7;88(11):5996-6003. doi: 10.1021/acs.analchem.6b01037. Epub 2016 May 10.

PMID:
27123572
17.

Development and validation of an internationally-standardized, high-resolution capillary gel-based electrophoresis PCR-ribotyping protocol for Clostridium difficile.

Fawley WN, Knetsch CW, MacCannell DR, Harmanus C, Du T, Mulvey MR, Paulick A, Anderson L, Kuijper EJ, Wilcox MH.

PLoS One. 2015 Feb 13;10(2):e0118150. doi: 10.1371/journal.pone.0118150. eCollection 2015.

18.

Whole genome sequencing reveals potential spread of Clostridium difficile between humans and farm animals in the Netherlands, 2002 to 2011.

Knetsch CW, Connor TR, Mutreja A, van Dorp SM, Sanders IM, Browne HP, Harris D, Lipman L, Keessen EC, Corver J, Kuijper EJ, Lawley TD.

Euro Surveill. 2014 Nov 13;19(45):20954.

19.

Current application and future perspectives of molecular typing methods to study Clostridium difficile infections.

Knetsch CW, Lawley TD, Hensgens MP, Corver J, Wilcox MW, Kuijper EJ.

Euro Surveill. 2013 Jan 24;18(4):20381. Review.

20.

Comparative analysis of an expanded Clostridium difficile reference strain collection reveals genetic diversity and evolution through six lineages.

Knetsch CW, Terveer EM, Lauber C, Gorbalenya AE, Harmanus C, Kuijper EJ, Corver J, van Leeuwen HC.

Infect Genet Evol. 2012 Oct;12(7):1577-85. doi: 10.1016/j.meegid.2012.06.003. Epub 2012 Jun 15.

PMID:
22705462
21.

Genetic markers for Clostridium difficile lineages linked to hypervirulence.

Knetsch CW, Hensgens MP, Harmanus C, van der Bijl MW, Savelkoul PH, Kuijper EJ, Corver J, van Leeuwen HC.

Microbiology. 2011 Nov;157(Pt 11):3113-23. doi: 10.1099/mic.0.051953-0. Epub 2011 Aug 26.

PMID:
21873406
22.

Comparison of real-time PCR techniques to cytotoxigenic culture methods for diagnosing Clostridium difficile infection.

Knetsch CW, Bakker D, de Boer RF, Sanders I, Hofs S, Kooistra-Smid AM, Corver J, Eastwood K, Wilcox MH, Kuijper EJ.

J Clin Microbiol. 2011 Jan;49(1):227-31. doi: 10.1128/JCM.01743-10. Epub 2010 Oct 27.

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