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Items: 21

1.

Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates.

Arsenault-Labrecque G, Sonah H, Lebreton A, Labbé C, Marchand G, Xue A, Belzile F, Knaus BJ, Grünwald NJ, Bélanger RR.

BMC Biol. 2018 Jul 26;16(1):80. doi: 10.1186/s12915-018-0549-9.

2.

Inferring Variation in Copy Number Using High Throughput Sequencing Data in R.

Knaus BJ, Grünwald NJ.

Front Genet. 2018 Apr 13;9:123. doi: 10.3389/fgene.2018.00123. eCollection 2018.

3.

Best Practices for Population Genetic Analyses.

Grünwald NJ, Everhart SE, Knaus BJ, Kamvar ZN.

Phytopathology. 2017 Sep;107(9):1000-1010. doi: 10.1094/PHYTO-12-16-0425-RVW. Epub 2017 Jul 27.

4.

Genetic Variation within Clonal Lineages of Phytophthora infestans Revealed through Genotyping-By-Sequencing, and Implications for Late Blight Epidemiology.

Hansen ZR, Everts KL, Fry WE, Gevens AJ, Grünwald NJ, Gugino BK, Johnson DA, Johnson SB, Judelson HS, Knaus BJ, McGrath MT, Myers KL, Ristaino JB, Roberts PD, Secor GA, Smart CD.

PLoS One. 2016 Nov 3;11(11):e0165690. doi: 10.1371/journal.pone.0165690. eCollection 2016.

5.

vcfr: a package to manipulate and visualize variant call format data in R.

Knaus BJ, Grünwald NJ.

Mol Ecol Resour. 2017 Jan;17(1):44-53. doi: 10.1111/1755-0998.12549. Epub 2016 Jul 12.

PMID:
27401132
6.

SNP-Based Differentiation of Phytophthora infestans Clonal Lineages Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis.

Hansen ZR, Knaus BJ, Tabima JF, Press CM, Judelson HS, Grünwald NJ, Smart CD.

Plant Dis. 2016 Jul;100(7):1297-1306. doi: 10.1094/PDIS-11-15-1247-RE. Epub 2016 Mar 10.

PMID:
30686206
8.

Loop-mediated isothermal amplification for detection of the tomato and potato late blight pathogen, Phytophthora infestans.

Hansen ZR, Knaus BJ, Tabima JF, Press CM, Judelson HS, Grünwald NJ, Smart CD.

J Appl Microbiol. 2016 Apr;120(4):1010-20. doi: 10.1111/jam.13079. Epub 2016 Mar 7.

9.

Simple sequence repeat markers that identify Claviceps species and strains.

Gilmore BS, Alderman SC, Knaus BJ, Bassil NV, Martin RC, Dombrowski JE, Dung JKS.

Fungal Biol Biotechnol. 2016 Jan 15;3:1. doi: 10.1186/s40694-016-0019-5. eCollection 2016.

10.

Diversity of Foliar Phytophthora Species on Rhododendron in Oregon Nurseries.

Knaus BJ, Fieland VJ, Graham KA, Grünwald NJ.

Plant Dis. 2015 Oct;99(10):1326-1332. doi: 10.1094/PDIS-09-14-0964-RE. Epub 2015 Aug 11.

PMID:
30690987
11.

Microsatellite primers for the Pacific Northwest conifer Callitropsis nootkatensis (Cupressaceae).

Jennings TN, Knaus BJ, Alderman K, Hennon PE, D'Amore DV, Cronn R.

Appl Plant Sci. 2013 Sep 2;1(9). pii: apps.1300025. doi: 10.3732/apps.1300025. eCollection 2013 Sep.

12.

Phytophthora community structure analyses in Oregon nurseries inform systems approaches to disease management.

Parke JL, Knaus BJ, Fieland VJ, Lewis C, Grünwald NJ.

Phytopathology. 2014 Oct;104(10):1052-62. doi: 10.1094/PHYTO-01-14-0014-R.

13.

Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (Pinus subgenus Strobus).

Eckert AJ, Bower AD, Jermstad KD, Wegrzyn JL, Knaus BJ, Syring JV, Neale DB.

Mol Ecol. 2013 Nov;22(22):5635-50. doi: 10.1111/mec.12514. Epub 2013 Oct 18.

PMID:
24134614
14.

SSR_pipeline: a bioinformatic infrastructure for identifying microsatellites from paired-end Illumina high-throughput DNA sequencing data.

Miller MP, Knaus BJ, Mullins TD, Haig SM.

J Hered. 2013 Nov-Dec;104(6):881-5. doi: 10.1093/jhered/est056. Epub 2013 Sep 19.

PMID:
24052535
15.

The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster.

Bushley KE, Raja R, Jaiswal P, Cumbie JS, Nonogaki M, Boyd AE, Owensby CA, Knaus BJ, Elser J, Miller D, Di Y, McPhail KL, Spatafora JW.

PLoS Genet. 2013 Jun;9(6):e1003496. doi: 10.1371/journal.pgen.1003496. Epub 2013 Jun 20.

16.

Targeted enrichment strategies for next-generation plant biology.

Cronn R, Knaus BJ, Liston A, Maughan PJ, Parks M, Syring JV, Udall J.

Am J Bot. 2012 Feb;99(2):291-311. doi: 10.3732/ajb.1100356. Epub 2012 Feb 6.

17.

Microsatellite primers for the Pacific Northwest endemic conifer Chamaecyparis lawsoniana (Cupressaceae).

Jennings TN, Knaus BJ, Kolpak S, Cronn R.

Am J Bot. 2011 Nov;98(11):e323-5. doi: 10.3732/ajb.1100317. Epub 2011 Oct 19.

18.

Multiplexed microsatellite recovery using massively parallel sequencing.

Jennings TN, Knaus BJ, Mullins TD, Haig SM, Cronn RC.

Mol Ecol Resour. 2011 Nov;11(6):1060-7. doi: 10.1111/j.1755-0998.2011.03033.x. Epub 2011 Jun 16.

PMID:
21676207
19.

Morphometric architecture of the most taxon-rich species in the U.S. flora: Astragalus lentiginosus (Fabaceae).

Knaus BJ.

Am J Bot. 2010 Nov;97(11):1816-26. doi: 10.3732/ajb.0900145. Epub 2010 Oct 18.

20.

Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore.

Knaus BJ, Cronn R, Liston A, Pilgrim K, Schwartz MK.

BMC Ecol. 2011 Apr 20;11:10. doi: 10.1186/1472-6785-11-10.

21.

Taxonomic considerations in listing subspecies under the U.S. Endangered Species Act.

Haig SM, Beever EA, Chambers SM, Draheim HM, Dugger BD, Dunham S, Elliott-Smith E, Fontaine JB, Kesler DC, Knaus BJ, Lopes IF, Loschl P, Mullins TD, Sheffield LM.

Conserv Biol. 2006 Dec;20(6):1584-94. Review.

PMID:
17181793

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