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Items: 1 to 50 of 110

1.

Disease Resistance Genetics and Genomics in Octoploid Strawberry.

Barbey C, Lee S, Verma S, Bird KA, Yocca AE, Edger PP, Knapp SJ, Whitaker VM, Folta KM.

G3 (Bethesda). 2019 Aug 16. pii: g3.400597.2019. doi: 10.1534/g3.119.400597. [Epub ahead of print]

2.

Grey mould of strawberry, a devastating disease caused by the ubiquitous necrotrophic fungal pathogen Botrytis cinerea.

Petrasch S, Knapp SJ, van Kan JAL, Blanco-Ulate B.

Mol Plant Pathol. 2019 Jun;20(6):877-892. doi: 10.1111/mpp.12794. Epub 2019 Apr 4. Review.

3.

Infection Strategies Deployed by Botrytis cinerea, Fusarium acuminatum, and Rhizopus stolonifer as a Function of Tomato Fruit Ripening Stage.

Petrasch S, Silva CJ, Mesquida-Pesci SD, Gallegos K, van den Abeele C, Papin V, Fernandez-Acero FJ, Knapp SJ, Blanco-Ulate B.

Front Plant Sci. 2019 Mar 1;10:223. doi: 10.3389/fpls.2019.00223. eCollection 2019.

4.

Author Correction: Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4.

PMID:
30842601
5.

Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Erratum in: Nat Genet. 2019 Apr;51(4):765.

PMID:
30804557
6.

Domestication of Temperate and Coastal Hybrids with Distinct Ancestral Gene Selection in Octoploid Strawberry.

Hardigan MA, Poorten TJ, Acharya CB, Cole GS, Hummer KE, Bassil N, Edger PP, Knapp SJ.

Plant Genome. 2018 Nov;11(3). doi: 10.3835/plantgenome2018.07.0049.

7.

Genome-Wide Association Mapping Uncovers Fw1, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry.

Pincot DDA, Poorten TJ, Hardigan MA, Harshman JM, Acharya CB, Cole GS, Gordon TR, Stueven M, Edger PP, Knapp SJ.

G3 (Bethesda). 2018 May 4;8(5):1817-1828. doi: 10.1534/g3.118.200129.

8.

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.

Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, Mower JP, Slovin JP, Hytönen T, Jiang N, Childs KL, Knapp SJ.

Gigascience. 2018 Feb 1;7(2):1-7. doi: 10.1093/gigascience/gix124.

9.

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution.

Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, Bellec A, Bérard A, Bergès H, Blanchet N, Boniface MC, Brunel D, Catrice O, Chaidir N, Claudel C, Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp SJ, Lai Z, Le Paslier MC, Lippi Y, Lorenzon L, Mandel JR, Marage G, Marchand G, Marquand E, Bret-Mestries E, Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T, Thomas J, Vandecasteele C, Varès D, Vear F, Vautrin S, Crespi M, Mangin B, Burke JM, Salse J, Muños S, Vincourt P, Rieseberg LH, Langlade NB.

Nature. 2017 Jun 1;546(7656):148-152. doi: 10.1038/nature22380. Epub 2017 May 22.

PMID:
28538728
10.

Genes affecting novel seed constituents in Limnanthes alba Benth: transcriptome analysis of developing embryos and a new genetic map of meadowfoam.

Slabaugh MB, Cooper LD, Kishore VK, Knapp SJ, Kling JG.

PeerJ. 2015 May 19;3:e915. doi: 10.7717/peerj.915. eCollection 2015.

11.

Association mapping in sunflower (Helianthus annuus L.) reveals independent control of apical vs. basal branching.

Nambeesan SU, Mandel JR, Bowers JE, Marek LF, Ebert D, Corbi J, Rieseberg LH, Knapp SJ, Burke JM.

BMC Plant Biol. 2015 Mar 11;15:84. doi: 10.1186/s12870-015-0458-9.

12.

Chromosomal evolution and patterns of introgression in helianthus.

Barb JG, Bowers JE, Renaut S, Rey JI, Knapp SJ, Rieseberg LH, Burke JM.

Genetics. 2014 Jul;197(3):969-79. doi: 10.1534/genetics.114.165548. Epub 2014 Apr 26.

13.

BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower.

Livaja M, Wang Y, Wieckhorst S, Haseneyer G, Seidel M, Hahn V, Knapp SJ, Taudien S, Schön CC, Bauer E.

BMC Genomics. 2013 Sep 17;14:628. doi: 10.1186/1471-2164-14-628.

14.

The use of SNP markers for linkage mapping in diploid and tetraploid peanuts.

Bertioli DJ, Ozias-Akins P, Chu Y, Dantas KM, Santos SP, Gouvea E, Guimarães PM, Leal-Bertioli SC, Knapp SJ, Moretzsohn MC.

G3 (Bethesda). 2014 Jan 10;4(1):89-96. doi: 10.1534/g3.113.007617.

15.

Genetic architecture of floral traits in Iris hexagona and Iris fulva.

Brothers AN, Barb JG, Ballerini ES, Drury DW, Knapp SJ, Arnold ML.

J Hered. 2013 Nov-Dec;104(6):853-61. doi: 10.1093/jhered/est059. Epub 2013 Sep 27.

PMID:
24078678
16.

Association mapping and the genomic consequences of selection in sunflower.

Mandel JR, Nambeesan S, Bowers JE, Marek LF, Ebert D, Rieseberg LH, Knapp SJ, Burke JM.

PLoS Genet. 2013 Mar;9(3):e1003378. doi: 10.1371/journal.pgen.1003378. Epub 2013 Mar 21.

17.

The EPICS Family Bundle and its effects on stress and coping of families of critically ill trauma patients.

Knapp SJ, Sole ML, Byers JF.

Appl Nurs Res. 2013 May;26(2):51-7. doi: 10.1016/j.apnr.2012.11.002. Epub 2013 Mar 16.

PMID:
23507239
18.

Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms.

Bowers JE, Nambeesan S, Corbi J, Barker MS, Rieseberg LH, Knapp SJ, Burke JM.

PLoS One. 2012;7(12):e51360. doi: 10.1371/journal.pone.0051360. Epub 2012 Dec 19.

19.

Comparative mapping in intraspecific populations uncovers a high degree of macrosynteny between A- and B-genome diploid species of peanut.

Guo Y, Khanal S, Tang S, Bowers JE, Heesacker AF, Khalilian N, Nagy ED, Zhang D, Taylor CA, Stalker HT, Ozias-Akins P, Knapp SJ.

BMC Genomics. 2012 Nov 10;13:608. doi: 10.1186/1471-2164-13-608.

20.

Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion.

Chen X, Zhu W, Azam S, Li H, Zhu F, Li H, Hong Y, Liu H, Zhang E, Wu H, Yu S, Zhou G, Li S, Zhong N, Wen S, Li X, Knapp SJ, Ozias-Akins P, Varshney RK, Liang X.

Plant Biotechnol J. 2013 Jan;11(1):115-27. doi: 10.1111/pbi.12018. Epub 2012 Nov 6.

21.

Sunflower genetic, genomic and ecological resources.

Kane NC, Burke JM, Marek L, Seiler G, Vear F, Baute G, Knapp SJ, Vincourt P, Rieseberg LH.

Mol Ecol Resour. 2013 Jan;13(1):10-20. doi: 10.1111/1755-0998.12023. Epub 2012 Oct 8. Review.

PMID:
23039950
22.

A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut.

Nagy ED, Guo Y, Tang S, Bowers JE, Okashah RA, Taylor CA, Zhang D, Khanal S, Heesacker AF, Khalilian N, Farmer AD, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Stalker HT, Nielsen N, Ozias-Akins P, Knapp SJ.

BMC Genomics. 2012 Sep 11;13:469. doi: 10.1186/1471-2164-13-469.

23.

Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.).

Sujay V, Gowda MV, Pandey MK, Bhat RS, Khedikar YP, Nadaf HL, Gautami B, Sarvamangala C, Lingaraju S, Radhakrishan T, Knapp SJ, Varshney RK.

Mol Breed. 2012 Aug;30(2):773-788. Epub 2011 Nov 22.

24.

Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.).

Gautami B, Pandey MK, Vadez V, Nigam SN, Ratnakumar P, Krishnamurthy L, Radhakrishnan T, Gowda MV, Narasu ML, Hoisington DA, Knapp SJ, Varshney RK.

Mol Breed. 2012 Aug;30(2):757-772. Epub 2011 Nov 22.

25.

Development of a 10,000 locus genetic map of the sunflower genome based on multiple crosses.

Bowers JE, Bachlava E, Brunick RL, Rieseberg LH, Knapp SJ, Burke JM.

G3 (Bethesda). 2012 Jul;2(7):721-9. doi: 10.1534/g3.112.002659. Epub 2012 Jul 1.

26.

Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa.

Scaglione D, Lanteri S, Acquadro A, Lai Z, Knapp SJ, Rieseberg L, Portis E.

Plant Biotechnol J. 2012 Oct;10(8):956-69. doi: 10.1111/j.1467-7652.2012.00725.x. Epub 2012 Jul 31.

27.

QTL mapping reveals the genetic architecture of loci affecting pre- and post-zygotic isolating barriers in Louisiana Iris.

Ballerini ES, Brothers AN, Tang S, Knapp SJ, Bouck A, Taylor SJ, Arnold ML, Martin NH.

BMC Plant Biol. 2012 Jun 15;12:91. doi: 10.1186/1471-2229-12-91.

28.

The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements.

Staton SE, Bakken BH, Blackman BK, Chapman MA, Kane NC, Tang S, Ungerer MC, Knapp SJ, Rieseberg LH, Burke JM.

Plant J. 2012 Oct;72(1):142-53. doi: 10.1111/j.1365-313X.2012.05072.x. Epub 2012 Jul 30.

29.

Genetic mapping and identification of QTL for earliness in the globe artichoke/cultivated cardoon complex.

Portis E, Scaglione D, Acquadro A, Mauromicale G, Mauro R, Knapp SJ, Lanteri S.

BMC Res Notes. 2012 May 23;5:252. doi: 10.1186/1756-0500-5-252.

30.

Genetic analysis of floral symmetry in Van Gogh's sunflowers reveals independent recruitment of CYCLOIDEA genes in the Asteraceae.

Chapman MA, Tang S, Draeger D, Nambeesan S, Shaffer H, Barb JG, Knapp SJ, Burke JM.

PLoS Genet. 2012;8(3):e1002628. doi: 10.1371/journal.pgen.1002628. Epub 2012 Mar 29.

31.

SNP discovery and development of a high-density genotyping array for sunflower.

Bachlava E, Taylor CA, Tang S, Bowers JE, Mandel JR, Burke JM, Knapp SJ.

PLoS One. 2012;7(1):e29814. doi: 10.1371/journal.pone.0029814. Epub 2012 Jan 4.

32.

RAD tag sequencing as a source of SNP markers in Cynara cardunculus L.

Scaglione D, Acquadro A, Portis E, Tirone M, Knapp SJ, Lanteri S.

BMC Genomics. 2012 Jan 3;13:3. doi: 10.1186/1471-2164-13-3.

33.

Downy mildew (Pl ( 8 ) and Pl ( 14 )) and rust (R ( Adv )) resistance genes reside in close proximity to tandemly duplicated clusters of non-TIR-like NBS-LRR-encoding genes on sunflower chromosomes 1 and 13.

Bachlava E, Radwan OE, Abratti G, Tang S, Gao W, Heesacker AF, Bazzalo ME, Zambelli A, Leon AJ, Knapp SJ.

Theor Appl Genet. 2011 Apr;122(6):1211-21. doi: 10.1007/s00122-010-1525-0. Epub 2011 Feb 4.

PMID:
21293840
34.

Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.).

Ravi K, Vadez V, Isobe S, Mir RR, Guo Y, Nigam SN, Gowda MV, Radhakrishnan T, Bertioli DJ, Knapp SJ, Varshney RK.

Theor Appl Genet. 2011 Apr;122(6):1119-32. doi: 10.1007/s00122-010-1517-0. Epub 2010 Dec 30.

35.

Contributions of flowering time genes to sunflower domestication and improvement.

Blackman BK, Rasmussen DA, Strasburg JL, Raduski AR, Burke JM, Knapp SJ, Michaels SD, Rieseberg LH.

Genetics. 2011 Jan;187(1):271-87. doi: 10.1534/genetics.110.121327. Epub 2010 Oct 13.

36.

Fine mapping of the sunflower resistance locus Pl(ARG) introduced from the wild species Helianthus argophyllus.

Wieckhorst S, Bachlava E, Dussle CM, Tang S, Gao W, Saski C, Knapp SJ, Schön CC, Hahn V, Bauer E.

Theor Appl Genet. 2010 Nov;121(8):1633-44. doi: 10.1007/s00122-010-1416-4. Epub 2010 Aug 11.

37.

Genetic architecture of novel traits in the hopi sunflower.

Wills DM, Abdel-Haleem H, Knapp SJ, Burke JM.

J Hered. 2010 Nov-Dec;101(6):727-36. doi: 10.1093/jhered/esq089. Epub 2010 Aug 8.

PMID:
20696668
38.

Transmission ratio distortion results in asymmetric introgression in Louisiana Iris.

Tang S, Okashah RA, Knapp SJ, Arnold ML, Martin NH.

BMC Plant Biol. 2010 Mar 18;10:48. doi: 10.1186/1471-2229-10-48.

39.

Asymmetric introgressive hybridization among louisiana iris species.

Arnold ML, Tang S, Knapp SJ, Martin NH.

Genes (Basel). 2010 Mar 15;1(1):9-22. doi: 10.3390/genes1010009.

40.

Phylogenetic analyses of peanut resistance gene candidates and screening of different genotypes for polymorphic markers.

Radwan OE, Ahmed TA, Knapp SJ.

Saudi J Biol Sci. 2010 Jan;17(1):43-9. doi: 10.1016/j.sjbs.2009.12.007.

41.

Pleiotropy of the branching locus (B) masks linked and unlinked quantitative trait loci affecting seed traits in sunflower.

Bachlava E, Tang S, Pizarro G, Schuppert GF, Brunick RK, Draeger D, Leon A, Hahn V, Knapp SJ.

Theor Appl Genet. 2010 Feb;120(4):829-42. doi: 10.1007/s00122-009-1212-1. Epub 2009 Nov 18.

PMID:
19921140
42.

Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.).

Chapman MA, Hvala J, Strever J, Matvienko M, Kozik A, Michelmore RW, Tang S, Knapp SJ, Burke JM.

Theor Appl Genet. 2009 Dec;120(1):85-91. doi: 10.1007/s00122-009-1161-8. Epub 2009 Oct 10.

PMID:
19820913
43.

Ontology and diversity of transcript-associated microsatellites mined from a globe artichoke EST database.

Scaglione D, Acquadro A, Portis E, Taylor CA, Lanteri S, Knapp SJ.

BMC Genomics. 2009 Sep 28;10:454. doi: 10.1186/1471-2164-10-454.

44.

Fitness effects and genetic architecture of plant-herbivore interactions in sunflower crop-wild hybrids.

Dechaine JM, Burger JC, Chapman MA, Seiler GJ, Brunick R, Knapp SJ, Burke JM.

New Phytol. 2009 Dec;184(4):828-41. doi: 10.1111/j.1469-8137.2009.02964.x. Epub 2009 Jul 27.

45.

EST and EST-SSR marker resources for Iris.

Tang S, Okashah RA, Cordonnier-Pratt MM, Pratt LH, Ed Johnson V, Taylor CA, Arnold ML, Knapp SJ.

BMC Plant Biol. 2009 Jun 10;9:72. doi: 10.1186/1471-2229-9-72.

46.

Selection for low erucic acid and genetic mapping of loci affecting the accumulation of very long-chain fatty acids in meadowfoam seed storage lipids.

Gandhi SD, Kishore VK, Crane JM, Slabaugh MB, Knapp SJ.

Genome. 2009 Jun;52(6):547-56. doi: 10.1139/g09-032.

PMID:
19483773
47.

Comparative genomic and population genetic analyses indicate highly porous genomes and high levels of gene flow between divergent helianthus species.

Kane NC, King MG, Barker MS, Raduski A, Karrenberg S, Yatabe Y, Knapp SJ, Rieseberg LH.

Evolution. 2009 Aug;63(8):2061-75. doi: 10.1111/j.1558-5646.2009.00703.x. Epub 2009 May 9.

48.

The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.).

Varshney RK, Bertioli DJ, Moretzsohn MC, Vadez V, Krishnamurthy L, Aruna R, Nigam SN, Moss BJ, Seetha K, Ravi K, He G, Knapp SJ, Hoisington DA.

Theor Appl Genet. 2009 Feb;118(4):729-39. doi: 10.1007/s00122-008-0933-x. Epub 2008 Dec 2.

PMID:
19048225
49.

A genomic scan for selection reveals candidates for genes involved in the evolution of cultivated sunflower (Helianthus annuus).

Chapman MA, Pashley CH, Wenzler J, Hvala J, Tang S, Knapp SJ, Burke JM.

Plant Cell. 2008 Nov;20(11):2931-45. doi: 10.1105/tpc.108.059808. Epub 2008 Nov 18.

50.

The genomic architecture of disease resistance in lettuce.

McHale LK, Truco MJ, Kozik A, Wroblewski T, Ochoa OE, Lahre KA, Knapp SJ, Michelmore RW.

Theor Appl Genet. 2009 Feb;118(3):565-80. doi: 10.1007/s00122-008-0921-1. Epub 2008 Nov 13. Erratum in: Theor Appl Genet.2009 Apr;118(6):1223-4.

PMID:
19005638

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