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Items: 39


The HTPmod Shiny application enables modeling and visualization of large-scale biological data.

Chen D, Fu LY, Hu D, Klukas C, Chen M, Kaufmann K.

Commun Biol. 2018 Jul 5;1:89. doi: 10.1038/s42003-018-0091-x. eCollection 2018.


Corrigendum: Towards recommendations for metadata and data handling in plant phenotyping.

Krajewski P, Chen D, Cwiek H, van Dijk ADJ, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S.

J Exp Bot. 2018 Mar 24;69(7):1819. doi: 10.1093/jxb/ery006. No abstract available.


Predicting plant biomass accumulation from image-derived parameters.

Chen D, Shi R, Pape JM, Neumann K, Arend D, Graner A, Chen M, Klukas C.

Gigascience. 2018 Feb 1;7(2). doi: 10.1093/gigascience/giy001.


Measures for interoperability of phenotypic data: minimum information requirements and formatting.

Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone SA, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P.

Plant Methods. 2016 Nov 9;12:44. eCollection 2016.


Genetic variation of growth dynamics in maize (Zea mays L.) revealed through automated non-invasive phenotyping.

Muraya MM, Chu J, Zhao Y, Junker A, Klukas C, Reif JC, Altmann T.

Plant J. 2017 Jan;89(2):366-380. doi: 10.1111/tpj.13390. Epub 2017 Jan 7.


Quantitative monitoring of Arabidopsis thaliana growth and development using high-throughput plant phenotyping.

Arend D, Lange M, Pape JM, Weigelt-Fischer K, Arana-Ceballos F, Mücke I, Klukas C, Altmann T, Scholz U, Junker A.

Sci Data. 2016 Aug 16;3:160055. doi: 10.1038/sdata.2016.55.


Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).

Schilling S, Gramzow L, Lobbes D, Kirbis A, Weilandt L, Hoffmeier A, Junker A, Weigelt-Fischer K, Klukas C, Wu F, Meng Z, Altmann T, Theißen G.

Plant J. 2015 Dec;84(6):1059-72. doi: 10.1111/tpj.13055. Epub 2015 Dec 7.


Advanced phenotyping and phenotype data analysis for the study of plant growth and development.

Rahaman MM, Chen D, Gillani Z, Klukas C, Chen M.

Front Plant Sci. 2015 Aug 10;6:619. doi: 10.3389/fpls.2015.00619. eCollection 2015. Review.


Towards recommendations for metadata and data handling in plant phenotyping.

Krajewski P, Chen D, Ćwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S.

J Exp Bot. 2015 Sep;66(18):5417-27. doi: 10.1093/jxb/erv271. Epub 2015 Jun 4.


Phenotypic and metabolic responses to drought and salinity of four contrasting lentil accessions.

Muscolo A, Junker A, Klukas C, Weigelt-Fischer K, Riewe D, Altmann T.

J Exp Bot. 2015 Sep;66(18):5467-80. doi: 10.1093/jxb/erv208. Epub 2015 May 11.


Dissecting spatiotemporal biomass accumulation in barley under different water regimes using high-throughput image analysis.

Neumann K, Klukas C, Friedel S, Rischbeck P, Chen D, Entzian A, Stein N, Graner A, Kilian B.

Plant Cell Environ. 2015 Oct;38(10):1980-96. doi: 10.1111/pce.12516. Epub 2015 Apr 14.


Optimizing experimental procedures for quantitative evaluation of crop plant performance in high throughput phenotyping systems.

Junker A, Muraya MM, Weigelt-Fischer K, Arana-Ceballos F, Klukas C, Melchinger AE, Meyer RC, Riewe D, Altmann T.

Front Plant Sci. 2015 Jan 20;5:770. doi: 10.3389/fpls.2014.00770. eCollection 2014.


Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis.

Chen D, Neumann K, Friedel S, Kilian B, Chen M, Altmann T, Klukas C.

Plant Cell. 2014 Dec;26(12):4636-55. doi: 10.1105/tpc.114.129601. Epub 2014 Dec 11.


AtRD22 and AtUSPL1, members of the plant-specific BURP domain family involved in Arabidopsis thaliana drought tolerance.

Harshavardhan VT, Van Son L, Seiler C, Junker A, Weigelt-Fischer K, Klukas C, Altmann T, Sreenivasulu N, Bäumlein H, Kuhlmann M.

PLoS One. 2014 Oct 15;9(10):e110065. doi: 10.1371/journal.pone.0110065. eCollection 2014.


Integrated Analysis Platform: An Open-Source Information System for High-Throughput Plant Phenotyping.

Klukas C, Chen D, Pape JM.

Plant Physiol. 2014 Jun;165(2):506-518. Epub 2014 Apr 23.


Dissecting the chromatin interactome of microRNA genes.

Chen D, Fu LY, Zhang Z, Li G, Zhang H, Jiang L, Harrison AP, Shanahan HP, Klukas C, Zhang HY, Ruan Y, Chen LL, Chen M.

Nucleic Acids Res. 2014 Mar;42(5):3028-43. doi: 10.1093/nar/gkt1294. Epub 2013 Dec 18.


The differential transcription network between embryo and endosperm in the early developing maize seed.

Lu X, Chen D, Shu D, Zhang Z, Wang W, Klukas C, Chen LL, Fan Y, Chen M, Zhang C.

Plant Physiol. 2013 May;162(1):440-55. doi: 10.1104/pp.113.214874. Epub 2013 Mar 11.


VANTED v2: a framework for systems biology applications.

Rohn H, Junker A, Hartmann A, Grafahrend-Belau E, Treutler H, Klapperstück M, Czauderna T, Klukas C, Schreiber F.

BMC Syst Biol. 2012 Nov 10;6:139. doi: 10.1186/1752-0509-6-139.


Analysis of high-throughput plant image data with the information system IAP.

Klukas C, Pape JM, Entzian A.

J Integr Bioinform. 2012 Jun 29;9(2):191. doi: 10.2390/biecoll-jib-2012-191.


Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation.

Junker A, Rohn H, Czauderna T, Klukas C, Hartmann A, Schreiber F.

Nat Protoc. 2012 Mar 1;7(3):579-93. doi: 10.1038/nprot.2012.002.


MyBioNet: interactively visualize, edit and merge biological networks on the web.

Huang D, Huang Y, Bai Y, Chen D, Hofestädt R, Klukas C, Chen M.

Bioinformatics. 2011 Dec 1;27(23):3321-2. doi: 10.1093/bioinformatics/btr557. Epub 2011 Oct 7.


Creating views on integrated multidomain data.

Rohn H, Klukas C, Schreiber F.

Bioinformatics. 2011 Jul 1;27(13):1839-45. doi: 10.1093/bioinformatics/btr282. Epub 2011 May 6.


Editing, validating and translating of SBGN maps.

Czauderna T, Klukas C, Schreiber F.

Bioinformatics. 2010 Sep 15;26(18):2340-1. doi: 10.1093/bioinformatics/btq407. Epub 2010 Jul 13.


Novel developments of the MetaCrop information system for facilitating systems biological approaches.

Hippe K, Colmsee C, Czauderna T, Grafahrend-Belau E, Junker BH, Klukas C, Scholz U, Schreiber F, Weise S.

J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-125.


Apomictic and sexual ovules of Boechera display heterochronic global gene expression patterns.

Sharbel TF, Voigt ML, Corral JM, Galla G, Kumlehn J, Klukas C, Schreiber F, Vogel H, Rotter B.

Plant Cell. 2010 Mar;22(3):655-71. doi: 10.1105/tpc.109.072223. Epub 2010 Mar 19.


Integration of -omics data and networks for biomedical research with VANTED.

Klukas C, Schreiber F.

J Integr Bioinform. 2010 Feb 2;7(2):112. doi: 10.2390/biecoll-jib-2010-112.


Lessons from GNE-deficient embryonic stem cells: sialic acid biosynthesis is involved in proliferation and gene expression.

Weidemann W, Klukas C, Klein A, Simm A, Schreiber F, Horstkorte R.

Glycobiology. 2010 Jan;20(1):107-17. doi: 10.1093/glycob/cwp153. Epub 2009 Sep 30.


Bioinformatics strategies for the analysis of lipids.

Wheelock CE, Goto S, Yetukuri L, D'Alexandri FL, Klukas C, Schreiber F, Oresic M.

Methods Mol Biol. 2009;580:339-68. doi: 10.1007/978-1-60761-325-1_19.


FBA-SimVis: interactive visualization of constraint-based metabolic models.

Grafahrend-Belau E, Klukas C, Junker BH, Schreiber F.

Bioinformatics. 2009 Oct 15;25(20):2755-7. doi: 10.1093/bioinformatics/btp408. Epub 2009 Jul 3.


Antisense inhibition of the plastidial glucose-6-phosphate/phosphate translocator in Vicia seeds shifts cellular differentiation and promotes protein storage.

Rolletschek H, Nguyen TH, Häusler RE, Rutten T, Göbel C, Feussner I, Radchuk R, Tewes A, Claus B, Klukas C, Linemann U, Weber H, Wobus U, Borisjuk L.

Plant J. 2007 Aug;51(3):468-84. Epub 2007 Jun 21.


Dynamic exploration and editing of KEGG pathway diagrams.

Klukas C, Schreiber F.

Bioinformatics. 2007 Feb 1;23(3):344-50. Epub 2006 Dec 1.


Meta-All: a system for managing metabolic pathway information.

Weise S, Grosse I, Klukas C, Koschützki D, Scholz U, Schreiber F, Junker BH.

BMC Bioinformatics. 2006 Oct 23;7:465.


Evidence of a key role for photosynthetic oxygen release in oil storage in developing soybean seeds.

Rolletschek H, Radchuk R, Klukas C, Schreiber F, Wobus U, Borisjuk L.

New Phytol. 2005 Sep;167(3):777-86.


Integrating data from biological experiments into metabolic networks with the DBE information system.

Borisjuk L, Hajirezaei MR, Klukas C, Rolletschek H, Schreiber F.

In Silico Biol. 2005;5(2):93-102.


Novel poly-substituted aryl acridinium esters and their use in immunoassay.

Law SJ, Miller T, Piran U, Klukas C, Chang S, Unger J.

J Biolumin Chemilumin. 1989 Jul;4(1):88-98.


Isolation of immunoglobulin messenger ribonucleic acid from human lymphoblastoid cell lines.

Molgaard HV, Weir L, Kenten J, Cramer F, Klukas CK, Gould H, Birch JR.

Biochemistry. 1981 Jul 21;20(15):4467-77. No abstract available.


Translation of human immunoglobulin heavy chain mRNA in vitro.

Klukas CK, Cramer F, Gould H.

Nature. 1977 Sep 15;269(5625):262-4. No abstract available.


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