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Items: 17

1.

TMSEG: Novel prediction of transmembrane helices.

Bernhofer M, Kloppmann E, Reeb J, Rost B.

Proteins. 2016 Nov;84(11):1706-1716. doi: 10.1002/prot.25155. Epub 2016 Sep 16.

2.

Structures of aminoarabinose transferase ArnT suggest a molecular basis for lipid A glycosylation.

Petrou VI, Herrera CM, Schultz KM, Clarke OB, Vendome J, Tomasek D, Banerjee S, Rajashankar KR, Belcher Dufrisne M, Kloss B, Kloppmann E, Rost B, Klug CS, Trent MS, Shapiro L, Mancia F.

Science. 2016 Feb 5;351(6273):608-12. doi: 10.1126/science.aad1172.

3.

Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human.

Ramilowski JA, Goldberg T, Harshbarger J, Kloppmann E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR.

Nat Commun. 2016 Feb 10;7:10706. doi: 10.1038/ncomms10706. No abstract available.

4.

Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis.

Ardiccioni C, Clarke OB, Tomasek D, Issa HA, von Alpen DC, Pond HL, Banerjee S, Rajashankar KR, Liu Q, Guan Z, Li C, Kloss B, Bruni R, Kloppmann E, Rost B, Manzini MC, Shapiro L, Mancia F.

Nat Commun. 2016 Jan 5;7:10175. doi: 10.1038/ncomms10175.

5.

A draft network of ligand-receptor-mediated multicellular signalling in human.

Ramilowski JA, Goldberg T, Harshbarger J, Kloppmann E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR.

Nat Commun. 2015 Jul 22;6:7866. doi: 10.1038/ncomms8866. Erratum in: Nat Commun. 2016;7:10706. Kloppman, Edda [Corrected to Kloppmann, Edda].

6.

A Combined Omics Approach to Generate the Surface Atlas of Human Naive CD4+ T Cells during Early T-Cell Receptor Activation.

Graessel A, Hauck SM, von Toerne C, Kloppmann E, Goldberg T, Koppensteiner H, Schindler M, Knapp B, Krause L, Dietz K, Schmidt-Weber CB, Suttner K.

Mol Cell Proteomics. 2015 Aug;14(8):2085-102. doi: 10.1074/mcp.M114.045690. Epub 2015 May 19.

7.

Protein structure. Structure and activity of tryptophan-rich TSPO proteins.

Guo Y, Kalathur RC, Liu Q, Kloss B, Bruni R, Ginter C, Kloppmann E, Rost B, Hendrickson WA.

Science. 2015 Jan 30;347(6221):551-5. doi: 10.1126/science.aaa1534.

8.

Evaluation of transmembrane helix predictions in 2014.

Reeb J, Kloppmann E, Bernhofer M, Rost B.

Proteins. 2015 Mar;83(3):473-84. doi: 10.1002/prot.24749. Epub 2015 Jan 22.

PMID:
25546441
9.

Structure and selectivity in bestrophin ion channels.

Yang T, Liu Q, Kloss B, Bruni R, Kalathur RC, Guo Y, Kloppmann E, Rost B, Colecraft HM, Hendrickson WA.

Science. 2014 Oct 17;346(6207):355-9. doi: 10.1126/science.1259723. Epub 2014 Sep 25.

10.

Structural basis for a pH-sensitive calcium leak across membranes.

Chang Y, Bruni R, Kloss B, Assur Z, Kloppmann E, Rost B, Hendrickson WA, Liu Q.

Science. 2014 Jun 6;344(6188):1131-5. doi: 10.1126/science.1252043.

11.

PredictProtein--an open resource for online prediction of protein structural and functional features.

Yachdav G, Kloppmann E, Kajan L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, Richter L, Ashkenazy H, Punta M, Schlessinger A, Bromberg Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W337-43. doi: 10.1093/nar/gku366. Epub 2014 May 5.

12.

An estimated 5% of new protein structures solved today represent a new Pfam family.

Mistry J, Kloppmann E, Rost B, Punta M.

Acta Crystallogr D Biol Crystallogr. 2013 Nov;69(Pt 11):2186-93. doi: 10.1107/S0907444913027157. Epub 2013 Oct 12.

13.

Coordinating the impact of structural genomics on the human α-helical transmembrane proteome.

Pieper U, Schlessinger A, Kloppmann E, Chang GA, Chou JJ, Dumont ME, Fox BG, Fromme P, Hendrickson WA, Malkowski MG, Rees DC, Stokes DL, Stowell MH, Wiener MC, Rost B, Stroud RM, Stevens RC, Sali A.

Nat Struct Mol Biol. 2013 Feb;20(2):135-8. doi: 10.1038/nsmb.2508. No abstract available.

14.

Structural genomics plucks high-hanging membrane proteins.

Kloppmann E, Punta M, Rost B.

Curr Opin Struct Biol. 2012 Jun;22(3):326-32. doi: 10.1016/j.sbi.2012.05.002. Epub 2012 May 21. Review.

15.

Investigating the mechanisms of photosynthetic proteins using continuum electrostatics.

Ullmann GM, Kloppmann E, Essigke T, Krammer EM, Klingen AR, Becker T, Bombarda E.

Photosynth Res. 2008 Jul;97(1):33-53. doi: 10.1007/s11120-008-9306-1. Epub 2008 May 14. Review.

PMID:
18478354
16.

An extended dead-end elimination algorithm to determine gap-free lists of low energy states.

Kloppmann E, Ullmann GM, Becker T.

J Comput Chem. 2007 Nov 15;28(14):2325-35.

PMID:
17471458
17.

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