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Items: 28

1.

Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools.

Freschi L, Bertelli C, Jeukens J, Moore MP, Kukavica-Ibrulj I, Emond-Rheault JG, Hamel J, Fothergill JL, Tucker NP, McClean S, Klockgether J, de Soyza A, Brinkman FSL, Levesque RC, Winstanley C.

FEMS Microbiol Lett. 2018 Jul 1;365(14). doi: 10.1093/femsle/fny120.

PMID:
29897457
2.

Long-Term Microevolution of Pseudomonas aeruginosa Differs between Mildly and Severely Affected Cystic Fibrosis Lungs.

Klockgether J, Cramer N, Fischer S, Wiehlmann L, Tümmler B.

Am J Respir Cell Mol Biol. 2018 Aug;59(2):246-256. doi: 10.1165/rcmb.2017-0356OC.

PMID:
29470920
3.

The Pseudomonas aeruginosa ExoY phenotype of high-copy-number recombinants is not detectable in natural isolates.

Munder A, Rothschuh J, Schirmer B, Klockgether J, Kaever V, Tümmler B, Seifert R, Kloth C.

Open Biol. 2018 Jan;8(1). pii: 170250. doi: 10.1098/rsob.170250.

4.

Recent advances in understanding Pseudomonas aeruginosa as a pathogen.

Klockgether J, Tümmler B.

F1000Res. 2017 Jul 28;6:1261. doi: 10.12688/f1000research.10506.1. eCollection 2017. Review.

5.

Multilocus amplicon sequencing of Pseudomonas aeruginosa cystic fibrosis airways isolates collected prior to and after early antipseudomonal chemotherapy.

Fischer S, Greipel L, Klockgether J, Dorda M, Wiehlmann L, Cramer N, Tümmler B.

J Cyst Fibros. 2017 May;16(3):346-352. doi: 10.1016/j.jcf.2016.10.013. Epub 2016 Nov 8.

PMID:
27836448
6.

Molecular Epidemiology of Mutations in Antimicrobial Resistance Loci of Pseudomonas aeruginosa Isolates from Airways of Cystic Fibrosis Patients.

Greipel L, Fischer S, Klockgether J, Dorda M, Mielke S, Wiehlmann L, Cramer N, Tümmler B.

Antimicrob Agents Chemother. 2016 Oct 21;60(11):6726-6734. doi: 10.1128/AAC.00724-16. Print 2016 Nov.

7.

Oxygen-dependent regulation of c-di-GMP synthesis by SadC controls alginate production in Pseudomonas aeruginosa.

Schmidt A, Hammerbacher AS, Bastian M, Nieken KJ, Klockgether J, Merighi M, Lapouge K, Poschgan C, Kölle J, Acharya KR, Ulrich M, Tümmler B, Unden G, Kaever V, Lory S, Haas D, Schwarz S, Döring G.

Environ Microbiol. 2016 Oct;18(10):3390-3402. doi: 10.1111/1462-2920.13208. Epub 2016 Feb 4.

PMID:
26743546
8.

Intraclonal genome diversity of the major Pseudomonas aeruginosa clones C and PA14.

Fischer S, Klockgether J, Morán Losada P, Chouvarine P, Cramer N, Davenport CF, Dethlefsen S, Dorda M, Goesmann A, Hilker R, Mielke S, Schönfelder T, Suerbaum S, Türk O, Woltemate S, Wiehlmann L, Tümmler B.

Environ Microbiol Rep. 2016 Apr;8(2):227-34. doi: 10.1111/1758-2229.12372. Epub 2016 Jan 28.

9.

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium.

Freschi L, Jeukens J, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Laroche J, Larose S, Maaroufi H, Fothergill JL, Moore M, Winsor GL, Aaron SD, Barbeau J, Bell SC, Burns JL, Camara M, Cantin A, Charette SJ, Dewar K, Déziel É, Grimwood K, Hancock RE, Harrison JJ, Heeb S, Jelsbak L, Jia B, Kenna DT, Kidd TJ, Klockgether J, Lam JS, Lamont IL, Lewenza S, Loman N, Malouin F, Manos J, McArthur AG, McKeown J, Milot J, Naghra H, Nguyen D, Pereira SK, Perron GG, Pirnay JP, Rainey PB, Rousseau S, Santos PM, Stephenson A, Taylor V, Turton JF, Waglechner N, Williams P, Thrane SW, Wright GD, Brinkman FS, Tucker NP, Tümmler B, Winstanley C, Levesque RC.

Front Microbiol. 2015 Sep 29;6:1036. doi: 10.3389/fmicb.2015.01036. eCollection 2015.

10.

Interclonal gradient of virulence in the Pseudomonas aeruginosa pangenome from disease and environment.

Hilker R, Munder A, Klockgether J, Losada PM, Chouvarine P, Cramer N, Davenport CF, Dethlefsen S, Fischer S, Peng H, Schönfelder T, Türk O, Wiehlmann L, Wölbeling F, Gulbins E, Goesmann A, Tümmler B.

Environ Microbiol. 2015 Jan;17(1):29-46. doi: 10.1111/1462-2920.12606. Epub 2014 Sep 29.

PMID:
25156090
11.

In vivo imaging of bioluminescent Pseudomonas aeruginosa in an acute murine airway infection model.

Munder A, Wölbeling F, Klockgether J, Wiehlmann L, Tümmler B.

Pathog Dis. 2014 Oct;72(1):74-7. doi: 10.1111/2049-632X.12184. Epub 2014 Jun 30.

PMID:
24833236
12.

The extensive set of accessory Pseudomonas aeruginosa genomic components.

Pohl S, Klockgether J, Eckweiler D, Khaledi A, Schniederjans M, Chouvarine P, Tümmler B, Häussler S.

FEMS Microbiol Lett. 2014 Jul;356(2):235-41. doi: 10.1111/1574-6968.12445. Epub 2014 May 12.

13.

Advances in understanding Pseudomonas.

Tümmler B, Wiehlmann L, Klockgether J, Cramer N.

F1000Prime Rep. 2014 Feb 3;6:9. doi: 10.12703/P6-9. eCollection 2014. Review.

14.

Developing an international Pseudomonas aeruginosa reference panel.

De Soyza A, Hall AJ, Mahenthiralingam E, Drevinek P, Kaca W, Drulis-Kawa Z, Stoitsova SR, Toth V, Coenye T, Zlosnik JE, Burns JL, Sá-Correia I, De Vos D, Pirnay JP, Kidd TJ, Reid D, Manos J, Klockgether J, Wiehlmann L, Tümmler B, McClean S, Winstanley C; EU FP7 funded COST Action BM1003 “Cell surface virulence determinants of cystic fibrosis pathogens”.

Microbiologyopen. 2013 Dec;2(6):1010-23. doi: 10.1002/mbo3.141. Epub 2013 Nov 11.

15.

Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB.

Bezuidt OK, Klockgether J, Elsen S, Attree I, Davenport CF, Tümmler B.

BMC Genomics. 2013 Jun 22;14:416. doi: 10.1186/1471-2164-14-416.

16.

Intraclonal diversity of the Pseudomonas aeruginosa cystic fibrosis airway isolates TBCF10839 and TBCF121838: distinct signatures of transcriptome, proteome, metabolome, adherence and pathogenicity despite an almost identical genome sequence.

Klockgether J, Miethke N, Kubesch P, Bohn YS, Brockhausen I, Cramer N, Eberl L, Greipel J, Herrmann C, Herrmann S, Horatzek S, Lingner M, Luciano L, Salunkhe P, Schomburg D, Wehsling M, Wiehlmann L, Davenport CF, Tümmler B.

Environ Microbiol. 2013 Jan;15(1):191-210. doi: 10.1111/j.1462-2920.2012.02842.x. Epub 2012 Aug 8.

PMID:
22882573
17.

Pseudomonas aeruginosa Genomic Structure and Diversity.

Klockgether J, Cramer N, Wiehlmann L, Davenport CF, Tümmler B.

Front Microbiol. 2011 Jul 13;2:150. doi: 10.3389/fmicb.2011.00150. eCollection 2011.

18.

Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs.

Cramer N, Klockgether J, Wrasman K, Schmidt M, Davenport CF, Tümmler B.

Environ Microbiol. 2011 Jul;13(7):1690-704. doi: 10.1111/j.1462-2920.2011.02483.x. Epub 2011 Apr 14.

PMID:
21492363
19.

Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics.

Frank S, Klockgether J, Hagendorf P, Geffers R, Schöck U, Pohl T, Davenport CF, Tümmler B.

Environ Microbiol. 2011 May;13(5):1309-26. doi: 10.1111/j.1462-2920.2011.02430.x. Epub 2011 Feb 28.

PMID:
21355971
20.

Functional genomics of the initial phase of cold adaptation of Pseudomonas putida KT2440.

Frank S, Schmidt F, Klockgether J, Davenport CF, Gesell Salazar M, Völker U, Tümmler B.

FEMS Microbiol Lett. 2011 May;318(1):47-54. doi: 10.1111/j.1574-6968.2011.02237.x. Epub 2011 Mar 1.

21.

Genome diversity of Pseudomonas aeruginosa PAO1 laboratory strains.

Klockgether J, Munder A, Neugebauer J, Davenport CF, Stanke F, Larbig KD, Heeb S, Schöck U, Pohl TM, Wiehlmann L, Tümmler B.

J Bacteriol. 2010 Feb;192(4):1113-21. doi: 10.1128/JB.01515-09. Epub 2009 Dec 18.

22.

Transcript profiling of the Pseudomonas aeruginosa genomic islands PAGI-2 and pKLC102.

Klockgether J, Würdemann D, Wiehlmann L, Tümmler B.

Microbiology. 2008 Jun;154(Pt 6):1599-604. doi: 10.1099/mic.0.2007/014340-0.

PMID:
18524914
23.

An intragenic deletion in pilQ leads to nonpiliation of a Pseudomonas aeruginosa strain isolated from cystic fibrosis lung.

Chang YS, Klockgether J, Tümmler B.

FEMS Microbiol Lett. 2007 May;270(2):201-6. Epub 2007 Feb 16.

24.

Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa.

Klockgether J, Würdemann D, Reva O, Wiehlmann L, Tümmler B.

J Bacteriol. 2007 Mar;189(6):2443-59. Epub 2006 Dec 28.

25.

Sequence diversity of the mucABD locus in Pseudomonas aeruginosa isolates from patients with cystic fibrosis.

Bragonzi A, Wiehlmann L, Klockgether J, Cramer N, Worlitzsch D, Döring G, Tümmler B.

Microbiology. 2006 Nov;152(Pt 11):3261-9.

PMID:
17074897
26.

Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C.

Klockgether J, Reva O, Larbig K, Tümmler B.

J Bacteriol. 2004 Jan;186(2):518-34.

27.

Gene islands integrated into tRNA(Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone.

Larbig KD, Christmann A, Johann A, Klockgether J, Hartsch T, Merkl R, Wiehlmann L, Fritz HJ, Tümmler B.

J Bacteriol. 2002 Dec;184(23):6665-80.

28.

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